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Developmentally regulated volatiles geosmin and 2-methylisoborneol attract a soil arthropod to Streptomyces bacteria promoting spore dispersal Nat. Microbiol. (IF 14.3) Pub Date : 2020-04-06 Paul G. Becher; Vasiliki Verschut; Maureen J. Bibb; Matthew J. Bush; Béla P. Molnár; Elisabeth Barane; Mahmoud M. Al-Bassam; Govind Chandra; Lijiang Song; Gregory L. Challis; Mark J. Buttner; Klas Flärdh
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SspABCD–SspE is a phosphorothioation-sensing bacterial defence system with broad anti-phage activities Nat. Microbiol. (IF 14.3) Pub Date : 2020-04-06 Xiaolin Xiong; Geng Wu; Yue Wei; Liqiong Liu; Yubing Zhang; Rui Su; Xianyue Jiang; Mengxue Li; Haiyan Gao; Xihao Tian; Yizhou Zhang; Li Hu; Si Chen; You Tang; Susu Jiang; Ruolin Huang; Zhiqiang Li; Yunfu Wang; Zixin Deng; Jiawei Wang; Peter C. Dedon; Shi Chen; Lianrong Wang
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Protozoa hosts lead to virulence Nat. Microbiol. (IF 14.3) Pub Date : 2020-03-26 Diane McDougald; Sharon R. Longford
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Mastering Toxoplasma sex and sleep Nat. Microbiol. (IF 14.3) Pub Date : 2020-03-26 William J. Sullivan
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Broad-spectrum anti-CRISPR proteins facilitate horizontal gene transfer Nat. Microbiol. (IF 14.3) Pub Date : 2020-03-26 Caroline Mahendra; Kathleen A. Christie; Beatriz A. Osuna; Rafael Pinilla-Redondo; Benjamin P. Kleinstiver; Joseph Bondy-Denomy
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Bacterial alginate regulators and phage homologs repress CRISPR–Cas immunity Nat. Microbiol. (IF 14.3) Pub Date : 2020-03-23 Adair L. Borges; Bardo Castro; Sutharsan Govindarajan; Tina Solvik; Veronica Escalante; Joseph Bondy-Denomy
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Mechanical regulation of photosynthesis in cyanobacteria Nat. Microbiol. (IF 14.3) Pub Date : 2020-03-23 Kristin A. Moore; Sabina Altus; Jian W. Tay; Janet B. Meehl; Evan B. Johnson; David M. Bortz; Jeffrey C. Cameron
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Publisher Correction: Ornithine capture by a translating ribosome controls bacterial polyamine synthesis Nat. Microbiol. (IF 14.3) Pub Date : 2020-03-19 Alba Herrero del Valle; Britta Seip; Iñaki Cervera-Marzal; Guénaël Sacheau; A. Carolin Seefeldt; C. Axel Innis
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Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice Nat. Microbiol. (IF 14.3) Pub Date : 2020-03-09 Gregory P. Donaldson; Wen-Chi Chou; Abigail L. Manson; Peter Rogov; Thomas Abeel; James Bochicchio; Dawn Ciulla; Alexandre Melnikov; Peter B. Ernst; Hiutung Chu; Georgia Giannoukos; Ashlee M. Earl; Sarkis K. Mazmanian
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Structural insights into influenza A virus ribonucleoproteins reveal a processive helical track as transcription mechanism Nat. Microbiol. (IF 14.3) Pub Date : 2020-03-09 Rocío Coloma; Rocío Arranz; José M. de la Rosa-Trevín; Carlos O. S. Sorzano; Sandie Munier; Diego Carlero; Nadia Naffakh; Juan Ortín; Jaime Martín-Benito
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Structural coordination of polymerization and crosslinking by a SEDS–bPBP peptidoglycan synthase complex Nat. Microbiol. (IF 14.3) Pub Date : 2020-03-09 Megan Sjodt; Patricia D. A. Rohs; Morgan S. A. Gilman; Sarah C. Erlandson; Sanduo Zheng; Anna G. Green; Kelly P. Brock; Atsushi Taguchi; Daniel Kahne; Suzanne Walker; Debora S. Marks; David Z. Rudner; Thomas G. Bernhardt; Andrew C. Kruse
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Core components of DNA lagging strand synthesis machinery are essential for hepatitis B virus cccDNA formation Nat. Microbiol. (IF 14.3) Pub Date : 2020-03-09 Lei Wei; Alexander Ploss
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Publisher Correction: Safety of bacteriophage therapy in severe Staphylococcus aureus infection Nat. Microbiol. (IF 14.3) Pub Date : 2020-03-05 Aleksandra Petrovic Fabijan; Ruby C. Y. Lin; Josephine Ho; Susan Maddocks; Nouri L. Ben Zakour; Jonathan R. Iredell
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2. Nat. Microbiol. (IF 14.3) Pub Date : 2020-03-02
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Inflammasome-mediated antagonism of type I interferon enhances Rickettsia pathogenesis. Nat. Microbiol. (IF 14.3) Pub Date : 2020-03-02 Thomas P Burke,Patrik Engström,Roberto A Chavez,Joshua A Fonbuena,Russell E Vance,Matthew D Welch
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Treat phage like living antibiotics. Nat. Microbiol. (IF 14.3) Pub Date : 2020-03-01 Robert T Schooley,Steffanie Strathdee
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Publisher Correction: Anthropogenic impact on the atmospheric microbiome. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-25 Stephen D J Archer,Stephen B Pointing
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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Functional assessment of cell entry and receptor usage for SARS-CoV-2 and other lineage B betacoronaviruses Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-24 Michael Letko; Andrea Marzi; Vincent Munster
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FttA is a CPSF73 homologue that terminates transcription in Archaea Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-24 Travis J. Sanders; Breanna R. Wenck; Jocelyn N. Selan; Mathew P. Barker; Stavros A. Trimmer; Julie E. Walker; Thomas J. Santangelo
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A MORC-driven transcriptional switch controls Toxoplasma developmental trajectories and sexual commitment. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-24 Dayana C Farhat,Christopher Swale,Céline Dard,Dominique Cannella,Philippe Ortet,Mohamed Barakat,Fabien Sindikubwabo,Lucid Belmudes,Pieter-Jan De Bock,Yohann Couté,Alexandre Bougdour,Mohamed-Ali Hakimi
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Envelope stress responses defend against type six secretion system attacks independently of immunity proteins Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-24 Steven J. Hersch; Nobuhiko Watanabe; Maria Silvina Stietz; Kevin Manera; Fatima Kamal; Brianne Burkinshaw; Linh Lam; Alexander Pun; Meixin Li; Alexei Savchenko; Tao G. Dong
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Ornithine capture by a translating ribosome controls bacterial polyamine synthesis Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-24 Alba Herrero del Valle; Britta Seip; Iñaki Cervera-Marzal; Guénaël Sacheau; A. Carolin Seefeldt; C. Axel Innis
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Publisher Correction: In vivo structure of the Legionella type II secretion system by electron cryotomography. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-19 Debnath Ghosal,Ki Woo Kim,Huaixin Zheng,Mohammed Kaplan,Hilary K Truchan,Alberto E Lopez,Ian E McIntire,Joseph P Vogel,Nicholas P Cianciotto,Grant J Jensen
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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We shouldn't worry when a virus mutates during disease outbreaks. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-18 Nathan D Grubaugh,Mary E Petrone,Edward C Holmes
Mutation. The word naturally conjures fears of unexpected and freakish changes. Ill-informed discussions of mutations thrive during virus outbreaks, including the ongoing spread of SARS-CoV-2. In reality, mutations are a natural part of the virus life cycle and rarely impact outbreaks dramatically.
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Safety of bacteriophage therapy in severe Staphylococcus aureus infection. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-17 Aleksandra Petrovic Fabijan,Ruby C Y Lin,Josephine Ho,Susan Maddocks,Nouri L Ben Zakour,Jonathan R Iredell,
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Author Correction: Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-11 Simon Roux,Mart Krupovic,Rebecca A Daly,Adair L Borges,Stephen Nayfach,Frederik Schulz,Allison Sharrar,Paula B Matheus Carnevali,Jan-Fang Cheng,Natalia N Ivanova,Joseph Bondy-Denomy,Kelly C Wrighton,Tanja Woyke,Axel Visel,Nikos C Kyrpides,Emiley A Eloe-Fadrosh
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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Author Correction: Reactive oxygen species induce antibiotic tolerance during systemic Staphylococcus aureus infection. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-10 Sarah E Rowe,Nikki J Wagner,Lupeng Li,Jenna E Beam,Alec D Wilkinson,Lauren C Radlinski,Qing Zhang,Edward A Miao,Brian P Conlon
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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Diarrhoeal events can trigger long-term Clostridium difficile colonization with recurrent blooms. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-10 David VanInsberghe,Joseph A Elsherbini,Bernard Varian,Theofilos Poutahidis,Susan Erdman,Martin F Polz
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Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-10 Karel Břinda,Alanna Callendrello,Kevin C Ma,Derek R MacFadden,Themoula Charalampous,Robyn S Lee,Lauren Cowley,Crista B Wadsworth,Yonatan H Grad,Gregory Kucherov,Justin O'Grady,Michael Baym,William P Hanage
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Publisher Correction: Effector-triggered immunity and pathogen sensing in metazoans. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-10 Natasha Lopes Fischer,Nawar Naseer,Sunny Shin,Igor E Brodsky
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Spatial metabolomics of in situ host-microbe interactions at the micrometre scale. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-03 Benedikt Geier,Emilia M Sogin,Dolma Michellod,Moritz Janda,Mario Kompauer,Bernhard Spengler,Nicole Dubilier,Manuel Liebeke
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Designing ecologically optimized pneumococcal vaccines using population genomics. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-03 Caroline Colijn,Jukka Corander,Nicholas J Croucher
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N6-methyladenosine modification enables viral RNA to escape recognition by RNA sensor RIG-I. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-03 Mijia Lu,Zijie Zhang,Miaoge Xue,Boxuan Simen Zhao,Olivia Harder,Anzhong Li,Xueya Liang,Thomas Z Gao,Yunsheng Xu,Jiyong Zhou,Zongdi Feng,Stefan Niewiesk,Mark E Peeples,Chuan He,Jianrong Li
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The microbiota programs DNA methylation to control intestinal homeostasis and inflammation. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-03 Ihab Ansari,Günter Raddatz,Julian Gutekunst,Meshi Ridnik,Daphne Cohen,Monther Abu-Remaileh,Timur Tuganbaev,Hagit Shapiro,Eli Pikarsky,Eran Elinav,Frank Lyko,Yehudit Bergman
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The biogeography of colonization resistance. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-01 Angel G Solis,Maayan Levy
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Anthropogenic impact on the atmospheric microbiome. Nat. Microbiol. (IF 14.3) Pub Date : 2020-02-01 Stephen D J Archer,Stephen B Pointing
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Transcriptional regulation by σ factor phosphorylation in bacteria. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-27 Shankar Chandrashekar Iyer,Delia Casas-Pastor,David Kraus,Petra Mann,Kathrin Schirner,Timo Glatter,Georg Fritz,Simon Ringgaard
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Endogenous murine microbiota member Faecalibaculum rodentium and its human homologue protect from intestinal tumour growth. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-27 Elena Zagato,Chiara Pozzi,Alice Bertocchi,Tiziana Schioppa,Fabiana Saccheri,Silvia Guglietta,Bruno Fosso,Laura Melocchi,Giulia Nizzoli,Jacopo Troisi,Marinella Marzano,Bianca Oresta,Ilaria Spadoni,Koji Atarashi,Sara Carloni,Stefania Arioli,Giulia Fornasa,Francesco Asnicar,Nicola Segata,Simone Guglielmetti,Kenya Honda,Graziano Pesole,William Vermi,Giuseppe Penna,Maria Rescigno
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Combinatorial selection in amoebal hosts drives the evolution of the human pathogen Legionella pneumophila. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-27 Jason M Park,Soma Ghosh,Tamara J O'Connor
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Reply to: Caution is warranted in using cephamycin antibiotics against recurrent Clostridioides difficile infection. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-27 Dena Lyras,Yogitha Srikhanta,Sheena McGowan
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Caution is warranted in using cephamycin antibiotics against recurrent Clostridioides difficile infection. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-27 Mark H Wilcox
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Rapid outbreak response requires trust. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-22
As the international community responds to an outbreak of coronavirus-induced pneumonia in Wuhan, China, early and open data sharing — which are vital for its control — depend on the trust that the data will not be used without proper attribution to those who generated it.
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Author Correction: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-21 Xianding Deng,Asmeeta Achari,Scot Federman,Guixia Yu,Sneha Somasekar,Inês Bártolo,Shigeo Yagi,Placide Mbala-Kingebeni,Jimmy Kapetshi,Steve Ahuka-Mundeke,Jean-Jacques Muyembe-Tamfum,Asim A Ahmed,Vijay Ganesh,Manasi Tamhankar,Jean L Patterson,Nicaise Ndembi,Dora Mbanya,Lazare Kaptue,Carole McArthur,José E Muñoz-Medina,Cesar R Gonzalez-Bonilla,Susana López,Carlos F Arias,Shaun Arevalo,Steve Miller,Mars
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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Diffusion and capture permits dynamic coupling between treadmilling FtsZ filaments and cell division proteins. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-20 Natalia Baranova,Philipp Radler,Víctor M Hernández-Rocamora,Carlos Alfonso,Mar López-Pelegrín,Germán Rivas,Waldemar Vollmer,Martin Loose
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Commensal Escherichia coli are a reservoir for the transfer of XDR plasmids into epidemic fluoroquinolone-resistant Shigella sonnei. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-20 Pham Thanh Duy,To Nguyen Thi Nguyen,Duong Vu Thuy,Hao Chung The,Felicity Alcock,Christine Boinett,Ho Ngoc Dan Thanh,Ha Thanh Tuyen,Guy E Thwaites,Maia A Rabaa,Stephen Baker
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Growth effects of N-acylethanolamines on gut bacteria reflect altered bacterial abundances in inflammatory bowel disease. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-20 Nadine Fornelos,Eric A Franzosa,Jason Bishai,John W Annand,Akihiko Oka,Jason Lloyd-Price,Timothy D Arthur,Ashley Garner,Julian Avila-Pacheco,Henry J Haiser,Andrew C Tolonen,Jeffrey A Porter,Clary B Clish,R Balfour Sartor,Curtis Huttenhower,Hera Vlamakis,Ramnik J Xavier
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Select autophagy genes maintain quiescence of tissue-resident macrophages and increase susceptibility to Listeria monocytogenes. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-20 Ya-Ting Wang,Konstantin Zaitsev,Qun Lu,Shan Li,W Timothy Schaiff,Ki-Wook Kim,Lindsay Droit,Craig B Wilen,Chandni Desai,Dale R Balce,Robert C Orchard,Anthony Orvedahl,Sunmin Park,Darren Kreamalmeyer,Scott A Handley,John D Pfeifer,Megan T Baldridge,Maxim N Artyomov,Christina L Stallings,Herbert W Virgin
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Klebsiella michiganensis transmission enhances resistance to Enterobacteriaceae gut invasion by nutrition competition. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-20 Rita A Oliveira,Katharine M Ng,Margarida B Correia,Vitor Cabral,Handuo Shi,Justin L Sonnenburg,Kerwyn Casey Huang,Karina B Xavier
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Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-20 Fiona J Whelan,Barbara Waddell,Saad A Syed,Shahrokh Shekarriz,Harvey R Rabin,Michael D Parkins,Michael G Surette
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Selective sequestration of signalling proteins in a membraneless organelle reinforces the spatial regulation of asymmetry in Caulobacter crescentus. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-20 Keren Lasker,Lexy von Diezmann,Xiaofeng Zhou,Daniel G Ahrens,Thomas H Mann,W E Moerner,Lucy Shapiro
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Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-13 Xianding Deng,Asmeeta Achari,Scot Federman,Guixia Yu,Sneha Somasekar,Inês Bártolo,Shigeo Yagi,Placide Mbala-Kingebeni,Jimmy Kapetshi,Steve Ahuka-Mundeke,Jean-Jacques Muyembe-Tamfum,Asim A Ahmed,Vijay Ganesh,Manasi Tamhankar,Jean L Patterson,Nicaise Ndembi,Dora Mbanya,Lazare Kaptue,Carole McArthur,José E Muñoz-Medina,Cesar R Gonzalez-Bonilla,Susana López,Carlos F Arias,Shaun Arevalo,Steve Miller,Mars
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Staphylococcus aureus cell growth and division are regulated by an amidase that trims peptides from uncrosslinked peptidoglycan. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-13 Truc Do,Kaitlin Schaefer,Ace George Santiago,Kathryn A Coe,Pedro B Fernandes,Daniel Kahne,Mariana G Pinho,Suzanne Walker
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Commensal Bacteroidetes protect against Klebsiella pneumoniae colonization and transmission through IL-36 signalling. Nat. Microbiol. (IF 14.3) Pub Date : 2020-01-06 Richard P Sequeira,Julie A K McDonald,Julian R Marchesi,Thomas B Clarke
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Cytosolic Gram-negative bacteria prevent apoptosis by inhibition of effector caspases through lipopolysaccharide. Nat. Microbiol. (IF 14.3) Pub Date : 2019-12-23 Saskia D Günther,Melanie Fritsch,Jens M Seeger,Lars M Schiffmann,Scott J Snipas,Maria Coutelle,Thomas A Kufer,Paul G Higgins,Veit Hornung,Maria L Bernardini,Stefan Höning,Martin Krönke,Guy S Salvesen,Hamid Kashkar
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Metabolic activity analyses demonstrate that Lokiarchaeon exhibits homoacetogenesis in sulfidic marine sediments. Nat. Microbiol. (IF 14.3) Pub Date : 2019-12-23 William D Orsi,Aurèle Vuillemin,Paula Rodriguez,Ömer K Coskun,Gonzalo V Gomez-Saez,Gaute Lavik,Volker Morholz,Timothy G Ferdelman
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Diet-derived galacturonic acid regulates virulence and intestinal colonization in enterohaemorrhagic Escherichia coli and Citrobacter rodentium. Nat. Microbiol. (IF 14.3) Pub Date : 2019-12-23 Angel G Jimenez,Melissa Ellermann,Wade Abbott,Vanessa Sperandio
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Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation. Nat. Microbiol. (IF 14.3) Pub Date : 2019-12-23 Eitan Yaffe,David A Relman
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