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Circular RNA discovery with emerging sequencing and deep learning technologies Nat. Genet. (IF 31.7) Pub Date : 2025-04-17 Jinyang Zhang, Fangqing Zhao
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Desmosome mutations in keratinocytes fuel melanoma development Nat. Genet. (IF 31.7) Pub Date : 2025-04-16 Patricia A. Possik, Kerrie L. Marie, David J. Adams
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Desmosome mutations impact the tumor microenvironment to promote melanoma proliferation Nat. Genet. (IF 31.7) Pub Date : 2025-04-16 Maayan Baron, Mohita Tagore, Patrick Wall, Fan Zheng, Dalia Barkley, Itai Yanai, Jing Yang, Maija Kiuru, Richard M. White, Trey Ideker
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Pan-genome analysis reveals the evolution and diversity of Malus Nat. Genet. (IF 31.7) Pub Date : 2025-04-16 Wei Li, Chong Chu, Taikui Zhang, Haochen Sun, Shiyao Wang, Zeyuan Liu, Zijun Wang, Hui Li, Yuqi Li, Xingtan Zhang, Zhiqiang Geng, Youqing Wang, Yi Li, Hengtao Zhang, Weishu Fan, Yi Wang, Xuefeng Xu, Lailiang Cheng, Dehui Zhang, Yao Xiong, Huixia Li, Bowen Zhou, Qingmei Guan, Cecilia H. Deng, Yongming Han, Hong Ma, Zhenhai Han
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Genome-wide analyses identify 25 infertility loci and relationships with reproductive traits across the allele frequency spectrum Nat. Genet. (IF 31.7) Pub Date : 2025-04-14 Samvida S. Venkatesh, Laura B. L. Wittemans, Duncan S. Palmer, Nikolas A. Baya, Teresa Ferreira, Barney Hill, Frederik Heymann Lassen, Melody J. Parker, Saskia Reibe, Ahmed Elhakeem, Karina Banasik, Mie T. Bruun, Christian Erikstrup, Bitten Aagard Jensen, Anders Juul, Christina Mikkelsen, Henriette S. Nielsen, Sisse R. Ostrowski, Ole B. Pedersen, Palle Duun Rohde, Erik Sørensen, Henrik Ullum, David
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Wheat tandem kinase RWT4 directly binds a fungal effector to activate defense Nat. Genet. (IF 31.7) Pub Date : 2025-04-14 Yi-Chang Sung, Yinghui Li, Zoe Bernasconi, Suji Baik, Soichiro Asuke, Beat Keller, Tzion Fahima, Gitta Coaker
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Longitudinal single-cell multiomic atlas of high-risk neuroblastoma reveals chemotherapy-induced tumor microenvironment rewiring Nat. Genet. (IF 31.7) Pub Date : 2025-04-14 Wenbao Yu, Rumeysa Biyik-Sit, Yasin Uzun, Chia-Hui Chen, Anusha Thadi, Jonathan H. Sussman, Minxing Pang, Chi-Yun Wu, Liron D. Grossmann, Peng Gao, David W. Wu, Aliza Yousey, Mei Zhang, Christina S. Turn, Zhan Zhang, Shovik Bandyopadhyay, Jeffrey Huang, Tasleema Patel, Changya Chen, Daniel Martinez, Lea F. Surrey, Michael D. Hogarty, Kathrin Bernt, Nancy R. Zhang, John M. Maris, Kai Tan
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Solanum pan-genome highlights paralog diversification Nat. Genet. (IF 31.7) Pub Date : 2025-04-10 Wei Li
Solanum is a diverse genus that includes crops such as tomato (Solanum lycopersicum), potato (Solanum tuberosum), eggplant (Solanum melongena) and African eggplant (Solanum aethiopicum), a crop that is indigenous to sub-Saharan Africa. Benoit et al. constructed a pan-genome of the Solanum genus from chromosome-scale genome assemblies for 22 species, capturing the rich phenotypic and genomic diversity
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The PCOS-endometrial cell atlas Nat. Genet. (IF 31.7) Pub Date : 2025-04-10 Chiara Anania
Polycystic ovary syndrome (PCOS) is linked to endometrial issues and associated with comorbidities such as insulin resistance, type 2 diabetes and obesity. Current treatments, including lifestyle changes and metformin administration, mainly manage symptoms rather than tackling the underlying causes, and their cell-type-specific effects are poorly understood. To gain mechanistic insight, Eriksson et
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Genetics of coronary artery dominance Nat. Genet. (IF 31.7) Pub Date : 2025-04-10 Kyle Vogan
Variation in coronary artery anatomy occurs among healthy individuals with respect to positioning of the posterior descending artery, which can arise from the right coronary artery (right dominant), left circumflex artery (left dominant), or both (co-dominant). To identify genetic variants contributing to this anatomical variation, Rios Coronado et al. performed genome-wide association analyses on
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Somatic mutations in the stomach Nat. Genet. (IF 31.7) Pub Date : 2025-04-10 Safia Danovi
It is well established that somatic mutations are pervasive in normal tissues. What is less clear is how these mutations set the stage for diseases such as cancer. Coorens et al. addressed this question in the stomach. The team analyzed whole-genome data from 238 gastric glands from 30 participants, of which 18 had gastric cancer. In addition, they generated targeted sequencing data from 829 microdissections
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Mutations in the small nuclear RNA gene RNU2-2 cause a severe neurodevelopmental disorder with prominent epilepsy Nat. Genet. (IF 31.7) Pub Date : 2025-04-10 Daniel Greene, Koenraad De Wispelaere, Jon Lees, Marta Codina-Solà, Brynjar O. Jensson, Emma Hales, Andrea Katrinecz, Esther Nieto Molina, Sonia Pascoal, Rolph Pfundt, Rachel Schot, Marta Sevilla Porras, Frank Sleutels, Irene Valenzuela, Robin Wijngaard, Ignacio Arroyo Carrera, Giles Atton, Didac Casas-Alba, Deirdre Donnelly, Anna Duat Rodríguez, Bárbara Fernández Garoz, Nicola Foulds, Deyanira García-Navas
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A redefined InDel taxonomy provides insights into mutational signatures Nat. Genet. (IF 31.7) Pub Date : 2025-04-10 Gene Ching Chiek Koh, Arjun Scott Nanda, Giuseppe Rinaldi, Soraya Boushaki, Andrea Degasperi, Cherif Badja, Andrew Marcel Pregnall, Salome Jingchen Zhao, Lucia Chmelova, Daniella Black, Laura Heskin, João Dias, Jamie Young, Yasin Memari, Scott Shooter, Jan Czarnecki, Matthew Arthur Brown, Helen Ruth Davies, Xueqing Zou, Serena Nik-Zainal
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Author Correction: Identification of genetic elements that autonomously determine DNA methylation states Nat. Genet. (IF 31.7) Pub Date : 2025-04-09 Florian Lienert, Christiane Wirbelauer, Indrani Som, Ann Dean, Fabio Mohn, Dirk Schübeler
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Mapping genetic diversity with the GenomeIndia project Nat. Genet. (IF 31.7) Pub Date : 2025-04-08 Chandrika Bhattacharyya, Krithika Subramanian, Bharathram Uppili, Nidhan K. Biswas, Shweta Ramdas, Karthik Bharadwaj Tallapaka, Prathima Arvind, Khader Valli Rupanagudi, Arindam Maitra, Tulasi Nagabandi, Tiyasha De, Kuldeep Singh, Praveen Sharma, Nanaocha Sharma, Sunil K. Raghav, Punit Prasad, E. V. Soniya, Abdul Jaleel, Shijulal Nelson Sathi, Madhvi Joshi, Chaitanya Joshi, Mayurika Lahiri, Santosh
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Genetic regulation of gene expression across multiple tissues in chickens Nat. Genet. (IF 31.7) Pub Date : 2025-04-08 Dailu Guan, Zhonghao Bai, Xiaoning Zhu, Conghao Zhong, Yali Hou, Di Zhu, Houcheng Li, Fangren Lan, Shuqi Diao, Yuelin Yao, Bingru Zhao, Xiaochang Li, Zhangyuan Pan, Yahui Gao, Yuzhe Wang, Dong Zou, Ruizhen Wang, Tianyi Xu, Congjiao Sun, Hongwei Yin, Jinyan Teng, Zhiting Xu, Qing Lin, Shourong Shi, Dan Shao, Fabien Degalez, Sandrine Lagarrigue, Ying Wang, Mingshan Wang, Minsheng Peng, Dominique Rocha
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Common-variant and rare-variant genetic architecture of heart failure across the allele-frequency spectrum Nat. Genet. (IF 31.7) Pub Date : 2025-04-07 David S. M. Lee, Kathleen M. Cardone, David Y. Zhang, Noah L. Tsao, Sarah Abramowitz, Pranav Sharma, John S. DePaolo, Mitchell Conery, Krishna G. Aragam, Kiran Biddinger, Ozan Dilitikas, Lily Hoffman-Andrews, Renae L. Judy, Atlas Khan, Iftikhar J. Kullo, Megan J. Puckelwartz, Nosheen Reza, Benjamin A. Satterfield, Pankhuri Singhal, Zoltan Arany, Thomas P. Cappola, Eric D. Carruth, Sharlene M. Day,
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CHOIR improves significance-based detection of cell types and states from single-cell data Nat. Genet. (IF 31.7) Pub Date : 2025-04-07 Cathrine Sant, Lennart Mucke, M. Ryan Corces
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A telomere-to-telomere genome assembly coupled with multi-omic data provides insights into the evolution of hexaploid bread wheat Nat. Genet. (IF 31.7) Pub Date : 2025-04-07 Shoucheng Liu, Kui Li, Xiuru Dai, Guochen Qin, Dongdong Lu, Zhaoxu Gao, Xiaopeng Li, Bolong Song, Jianxin Bian, Da Ren, Yongqi Liu, Xiaofeng Chen, Yunbi Xu, Weimin Liu, Chen Yang, Xiaoqin Liu, Shisheng Chen, Jian Li, Bosheng Li, Hang He, Xing Wang Deng
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A conserved checkpoint for ligand-dependent enhancer activation Nat. Genet. (IF 31.7) Pub Date : 2025-04-04
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An eRNA transcription checkpoint for diverse signal-dependent enhancer activation programs Nat. Genet. (IF 31.7) Pub Date : 2025-04-04 Lishuan Wang, Wei Yuan, Amir Gamliel, Wubin Ma, Seowon Lee, Yuliang Tan, Zeyu Chen, Havilah Taylor, Kenneth Ohgi, Soohwan Oh, Aneel K. Aggarwal, Michael G. Rosenfeld
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Psychiatric genetics in the diverse landscape of Latin American populations Nat. Genet. (IF 31.7) Pub Date : 2025-04-02 Estela M. Bruxel, Diego L. Rovaris, Sintia I. Belangero, Gabriela Chavarría-Soley, Alfredo B. Cuellar-Barboza, José J. Martínez-Magaña, Sheila T. Nagamatsu, Caroline M. Nievergelt, Diana L. Núñez-Ríos, Vanessa K. Ota, Roseann E. Peterson, Laura G. Sloofman, Amy M. Adams, Elinette Albino, Angel T. Alvarado, Diego Andrade-Brito, Paola Y. Arguello-Pascualli, Cibele E. Bandeira, Claiton H. D. Bau, Cynthia
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The interplay between germline and somatic variants in alpha-1 anti-trypsin deficiency liver disease Nat. Genet. (IF 31.7) Pub Date : 2025-04-01 Sílvia Vilarinho
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Borzoi decodes the complex DNA signals governing gene regulation Nat. Genet. (IF 31.7) Pub Date : 2025-04-01 Sandra T. Cooper
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Collaborative genome-wide association analysis with cryptography Nat. Genet. (IF 31.7) Pub Date : 2025-04-01
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Quantitative characterization of tissue states using multiomics and ecological spatial analysis Nat. Genet. (IF 31.7) Pub Date : 2025-04-01 Daisy Yi Ding, Zeyu Tang, Bokai Zhu, Hongyu Ren, Alex K. Shalek, Robert Tibshirani, Garry P. Nolan
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Spatially resolved transcriptomic analysis of the adult human prostate Nat. Genet. (IF 31.7) Pub Date : 2025-04-01 Junyi Hu, Fei Liu, Jing Zhang, Lei Yin, Wanli Cao, Weidong Xu, Yifan Chang, Ye Wang, Jian Wang, Yaxin Hou, Lilong Liu, Sujun Chen, Guanghui Zhu, Junhui Jiang, Zixian Wang, Gong-Hong Wei, Housheng Hansen He, Di Gu, Ke Chen, Shancheng Ren
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Causal machine learning for single-cell genomics Nat. Genet. (IF 31.7) Pub Date : 2025-03-31 Alejandro Tejada-Lapuerta, Paul Bertin, Stefan Bauer, Hananeh Aliee, Yoshua Bengio, Fabian J. Theis
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The complexity of tobacco smoke-induced mutagenesis in head and neck cancer Nat. Genet. (IF 31.7) Pub Date : 2025-03-31 Laura Torrens, Sarah Moody, Ana Carolina de Carvalho, Mariya Kazachkova, Behnoush Abedi-Ardekani, Saamin Cheema, Sergey Senkin, Thomas Cattiaux, Ricardo Cortez Cardoso Penha, Joshua R. Atkins, Valérie Gaborieau, Priscilia Chopard, Christine Carreira, Ammal Abbasi, Erik N. Bergstrom, Raviteja Vangara, Jingwei Wang, Stephen Fitzgerald, Calli Latimer, Marcos Diaz-Gay, David Jones, Jon Teague, Felipe Ribeiro
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The genome and GeneBank genomics of allotetraploid Nicotiana tabacum provide insights into genome evolution and complex trait regulation Nat. Genet. (IF 31.7) Pub Date : 2025-03-26 Yanjun Zan, Shuai Chen, Min Ren, Guoxiang Liu, Yutong Liu, Yu Han, Yang Dong, Yao Zhang, Huan Si, Zhengwen Liu, Dan Liu, Xingwei Zhang, Ying Tong, Yuan Li, Caihong Jiang, Liuying Wen, Zhiliang Xiao, Yangyang Sun, Ruimei Geng, Yan Ji, Quanfu Feng, Yuanying Wang, Guoyou Ye, Lingzhao Fang, Yong Chen, Lirui Cheng, Aiguo Yang
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Rare loss-of-function variants in HECTD2 and AKAP11 confer risk of bipolar disorder Nat. Genet. (IF 31.7) Pub Date : 2025-03-25 Thorgeir E. Thorgeirsson, Vinicius Tragante, Gardar Sveinbjornsson, Gudrun A. Jonsdottir, G. Bragi Walters, Erna V. Ivarsdottir, Gudny A. Arnadottir, Arni Sturluson, Brynjar O. Jensson, Run Fridriksdottir, Astros Th. Skuladottir, Gudmundur Einarsson, Gyda Bjornsdottir, Arni F. Gunnarsson, Rosa S. Gisladottir, Asgeir Sigurdsson, Asmundur Oddsson, Hakon Jonsson, Olafur Th. Magnusson, Hannes Helgason
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Author Correction: Origin and de novo domestication of sweet orange Nat. Genet. (IF 31.7) Pub Date : 2025-03-25 Shengjun Liu, Yuantao Xu, Kun Yang, Yue Huang, Zhihao Lu, Shulin Chen, Xiang Gao, Gongao Xiao, Peng Chen, Xiuli Zeng, Lun Wang, Weikang Zheng, Zishuang Liu, Guanglian Liao, Fa He, Junjie Liu, Pengfei Wan, Fang Ding, Junli Ye, Wenbiao Jiao, Lijun Chai, Zhiyong Pan, Fei Zhang, Zongcheng Lin, Yanjun Zan, Wenwu Guo, Robert M. Larkin, Zongzhou Xie, Xia Wang, Xiuxin Deng, Qiang Xu
Correction to: Nature Genetics https://doi.org/10.1038/s41588-025-02122-4, published online 5 March 2025.
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Author Correction: Rare variant analyses in 51,256 type 2 diabetes cases and 370,487 controls reveal the pathogenicity spectrum of monogenic diabetes genes Nat. Genet. (IF 31.7) Pub Date : 2025-03-25 Alicia Huerta-Chagoya, Philip Schroeder, Ravi Mandla, Jiang Li, Lowri Morris, Maheak Vora, Ahmed Alkanaq, Dorka Nagy, Lukasz Szczerbinski, Jesper G. S. Madsen, Silvia Bonàs-Guarch, Fanny Mollandin, Joanne B. Cole, Bianca Porneala, Kenneth Westerman, Josephine H. Li, Toni I. Pollin, Jose C. Florez, Anna L. Gloyn, David J. Carey, Inês Cebola, Uyenlinh L. Mirshahi, Alisa K. Manning, Aaron Leong, Miriam
Correction to: Nature Genetics https://doi.org/10.1038/s41588-024-01947-9, published online 8 October 2024.
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The landscape of N6-methyladenosine in localized primary prostate cancer Nat. Genet. (IF 31.7) Pub Date : 2025-03-24 Xin Xu, Helen Zhu, Rupert Hugh-White, Julie Livingstone, Stefan Eng, Nicole Zeltser, Yujuan Wang, Kinga Pajdzik, Sujun Chen, Kathleen E. Houlahan, Wenqin Luo, Shun Liu, Xi Xu, Minzhi Sheng, Wang Yuan Guo, Jaron Arbet, Yuxi Song, Miranda Wang, Yong Zeng, Shiyan Wang, Guanghui Zhu, Tingxiao Gao, Wei Chen, Xinpei Ci, Wenjie Xu, Kexin Xu, Michele Orain, Valerie Picard, Helene Hovington, Alain Bergeron
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An alternative model for maternal mtDNA inheritance Nat. Genet. (IF 31.7) Pub Date : 2025-03-20 Mikhail Alexeyev, Yidong Bai
arising from W. Lee et al. Nature Genetics https://doi.org/10.1038/s41588-023-01505-9 (2023) The exact mechanism preventing paternal mitochondrial DNA (mtDNA) inheritance in humans remains unresolved. In their recent report, ‘Molecular basis for maternal inheritance of human mitochondrial DNA’, Lee et al. propose that this process is controlled by phosphorylation of the mitochondrial transcription
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Reply to: An alternative model for maternal mtDNA inheritance Nat. Genet. (IF 31.7) Pub Date : 2025-03-20 William Lee, Angelica Zamudio-Ochoa, Gina Buchel, Petar Podlesniy, Nuria Marti Gutierrez, Aleksei Mikhalchenko, Ramon Trullas, Shoukhrat Mitalipov, Dmitry Temiakov
replying to M. Alexeyev & Y. Bai Nature Genetics https://doi.org/10.1038/s41588-025-02149-7 (2025) The dogma of uniparental inheritance of mitochondrial DNA (mtDNA) represents a fascinating aspect of genetics and the evolution of all living organisms. The processes underlying this trait involve molecular mechanisms that act before and after oocyte fertilization. The former involves elimination of mtDNA
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A likelihood-based framework for demographic inference from genealogical trees Nat. Genet. (IF 31.7) Pub Date : 2025-03-20 Caoqi Fan, Jordan L. Cahoon, Bryan L. Dinh, Diego Ortega-Del Vecchyo, Christian D. Huber, Michael D. Edge, Nicholas Mancuso, Charleston W. K. Chiang
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A structured coalescent model reveals deep ancestral structure shared by all modern humans Nat. Genet. (IF 31.7) Pub Date : 2025-03-18 Trevor Cousins, Aylwyn Scally, Richard Durbin
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Quantitative characterization of cell niches in spatially resolved omics data Nat. Genet. (IF 31.7) Pub Date : 2025-03-18 Sebastian Birk, Irene Bonafonte-Pardàs, Adib Miraki Feriz, Adam Boxall, Eneritz Agirre, Fani Memi, Anna Maguza, Anamika Yadav, Erick Armingol, Rong Fan, Gonçalo Castelo-Branco, Fabian J. Theis, Omer Ali Bayraktar, Carlos Talavera-López, Mohammad Lotfollahi
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A telomere-to-telomere genome assembly of cotton provides insights into centromere evolution and short-season adaptation Nat. Genet. (IF 31.7) Pub Date : 2025-03-17 Guanjing Hu, Zhenyu Wang, Zunzhe Tian, Kai Wang, Gaoxiang Ji, Xingxing Wang, Xianliang Zhang, Zhaoen Yang, Xuan Liu, Ruoyu Niu, De Zhu, Yuzhi Zhang, Lian Duan, Xueyuan Ma, Xianpeng Xiong, Jiali Kong, Xianjia Zhao, Ya Zhang, Junjie Zhao, Shoupu He, Corrinne E. Grover, Junji Su, Keyun Feng, Guangrun Yu, Jinlei Han, Xinshan Zang, Zhiqiang Wu, Weihua Pan, Jonathan F. Wendel, Xiongfeng Ma
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Genomic analysis of 1,325 Camellia accessions sheds light on agronomic and metabolic traits for tea plant improvement Nat. Genet. (IF 31.7) Pub Date : 2025-03-17 Weilong Kong, Xiangrui Kong, Zhongqiang Xia, Xiaofeng Li, Fang Wang, Ruiyang Shan, Zhihui Chen, Xiaomei You, Yuanyan Zhao, Yanping Hu, Shiqin Zheng, Sitong Zhong, Shengcheng Zhang, Yanbing Zhang, Kaixing Fang, Yinghao Wang, Hui Liu, Yazhen Zhang, Xinlei Li, Hualing Wu, Guo-Bo Chen, Xingtan Zhang, Changsong Chen
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The Farm Animal Genotype–Tissue Expression (FarmGTEx) Project Nat. Genet. (IF 31.7) Pub Date : 2025-03-17 Lingzhao Fang, Jinyan Teng, Qing Lin, Zhonghao Bai, Shuli Liu, Dailu Guan, Bingjie Li, Yahui Gao, Yali Hou, Mian Gong, Zhangyuan Pan, Ying Yu, Emily L. Clark, Jacqueline Smith, Konrad Rawlik, Ruidong Xiang, Amanda J. Chamberlain, Michael E. Goddard, Mathew Littlejohn, Greger Larson, David E. MacHugh, John F. O’Grady, Peter Sørensen, Goutam Sahana, Mogens Sandø Lund, Zhihua Jiang, Xiangchun Pan, Wentao
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Cross-ancestry and sex-stratified genome-wide association analyses of amygdala and subnucleus volumes Nat. Genet. (IF 31.7) Pub Date : 2025-03-17 Yuan Ji, Nana Liu, Yunjun Yang, Meiyun Wang, Jingliang Cheng, Wenzhen Zhu, Shijun Qiu, Zuojun Geng, Guangbin Cui, Yongqiang Yu, Weihua Liao, Hui Zhang, Bo Gao, Xiaojun Xu, Tong Han, Zhenwei Yao, Quan Zhang, Wen Qin, Feng Liu, Meng Liang, Sijia Wang, Qiang Xu, Jiayuan Xu, Jilian Fu, Peng Zhang, Wei Li, Dapeng Shi, Caihong Wang, Su Lui, Zhihan Yan, Feng Chen, Jing Zhang, Wen Shen, Yanwei Miao, Dawei
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Understanding immune escape in lung cancer Nat. Genet. (IF 31.7) Pub Date : 2025-03-13 Safia Danovi
Treatment resistance can be a turning point in the journey of a patient with cancer, but the genetic path to it remains unclear. Bakir et al. studied this in the context of neopeptide vaccines (NPVs) — a therapy whereby the patient is immunized with tumor-specific peptides. An NPV was designed for a patient with EGFR-mutant lung cancer whose disease had progressed despite multiple lines of treatment
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Single-cell mapping of HTT somatic repeat expansions Nat. Genet. (IF 31.7) Pub Date : 2025-03-13 Kyle Vogan
Huntington’s disease is a dominantly inherited disorder caused by a CAG repeat expansion in HTT. Mounting evidence suggests that somatic instability of the repeat expansion has an important role in disease onset. To examine this hypothesis more closely, Handsaker et al. developed an approach to assay both repeat length and gene expression in single nuclei from post-mortem brain tissues of individuals
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Hyperactive histone genes fuel cancer Nat. Genet. (IF 31.7) Pub Date : 2025-03-13 Tiago Faial
Many cancer types exhibit very high levels of transcription across the genome, which correlate with poor clinical outcomes. To gain a better understanding of this phenomenon, Henikoff et al. used their formalin-fixed paraffin-embedded (FFPE)–cleavage under targeted accessible chromatin (CUTAC) method to study the binding of RNA polymerase II (Pol II) genome-wide in multiple cancer samples. They observed
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High-throughput screening identifies modulators of gene bursting Nat. Genet. (IF 31.7) Pub Date : 2025-03-13 Chiara Anania
Gene activation involves discontinuous and stochastic RNA synthesis, a process known as transcriptional bursting. Previous studies have identified some regulators of gene bursting. However, a systematic and unbiased screening of its determinants has been missing. To fill this gap, Sood et al. developed an imaging-based assay measuring bursting of endogenous genes in single cells. They applied this
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Revealing the distinct genomic features of Japanese soybeans Nat. Genet. (IF 31.7) Pub Date : 2025-03-11
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Alterations in PD-L1 succinylation shape anti-tumor immune responses in melanoma Nat. Genet. (IF 31.7) Pub Date : 2025-03-11 Long Liang, Xinwei Kuang, Yi He, Lin Zhu, Poyee Lau, Xin Li, Dingan Luo, Lan Gong, Wenbin Zhou, Fanglin Zhang, Xiaowei Liang, Zhuofeng Li, Bin Hu, Dandan Liu, Tao Ding, Hui Li, Shuang Zhao, Juan Su, Mien-Chie Hung, Jing Liu, Hong Liu, Xiang Chen
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Equity, ethics and the promise of partnership in genomic medicine Nat. Genet. (IF 31.7) Pub Date : 2025-03-10 Nicola L. Hawley, Satupaitea Viali
A recent New York Times article1 highlights a pivotal moment for genetic research: a first revenue-sharing agreement between a biotech company, Variant Bio, and the communities with whom they partner to collect genomic data. Their attempt to address the systemic inequities and historical exploitation that has characterized genomic science raises important questions about how the field can responsibly
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An enhanced framework for local genetic correlation analysis Nat. Genet. (IF 31.7) Pub Date : 2025-03-10 Yuying Li, Yudi Pawitan, Xia Shen
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Family-based genome-wide association study designs for increased power and robustness Nat. Genet. (IF 31.7) Pub Date : 2025-03-10 Junming Guan, Tammy Tan, Seyed Moeen Nehzati, Michael Bennett, Patrick Turley, Daniel J. Benjamin, Alexander Strudwick Young
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Selection for somatic escape variants in SERPINA1 in the liver of patients with alpha-1 antitrypsin deficiency Nat. Genet. (IF 31.7) Pub Date : 2025-03-10 Natalia Brzozowska, Lily Y. D. Wu, Vera Khodzhaeva, William J. Griffiths, Adam Duckworth, Hyunchul Jung, Tim H. H. Coorens, Yvette Hooks, Joseph E. Chambers, Peter J. Campbell, Stefan J. Marciniak, Matthew Hoare
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Novel mRNA isoforms in human microglia refine genetic associations with neurodegeneration Nat. Genet. (IF 31.7) Pub Date : 2025-03-07
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Comparison of the multivariate genetic architecture of eight major psychiatric disorders across sex Nat. Genet. (IF 31.7) Pub Date : 2025-03-07 Ted Schwaba, Travis T. Mallard, Adam X. Maihofer, Mijke Rhemtulla, Phil H. Lee, Jordan W. Smoller, Lea K. Davis, Michel G. Nivard, Andrew D. Grotzinger, Elliot M. Tucker-Drob
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Sequencing in over 50,000 cases identifies coding and structural variation underlying atrial fibrillation risk Nat. Genet. (IF 31.7) Pub Date : 2025-03-06 Seung Hoan Choi, Sean J. Jurgens, Ling Xiao, Matthew C. Hill, Christopher M. Haggerty, Garðar Sveinbjörnsson, Valerie N. Morrill, Nicholas A. Marston, Lu-Chen Weng, James P. Pirruccello, David O. Arnar, Daniel Fannar Gudbjartsson, Helene Mantineo, Aenne S. von Falkenhausen, Andrea Natale, Arnljot Tveit, Bastiaan Geelhoed, Carolina Roselli, David R. Van Wagoner, Dawood Darbar, Doreen Haase, Elsayed
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Meta-analysis of genome-wide associations and polygenic risk prediction for atrial fibrillation in more than 180,000 cases Nat. Genet. (IF 31.7) Pub Date : 2025-03-06 Carolina Roselli, Ida Surakka, Morten S. Olesen, Gardar Sveinbjornsson, Nicholas A. Marston, Seung Hoan Choi, Hilma Holm, Mark Chaffin, Daniel Gudbjartsson, Matthew C. Hill, Hildur Aegisdottir, Christine M. Albert, Alvaro Alonso, Christopher D. Anderson, Dan E. Arking, David O. Arnar, John Barnard, Emelia J. Benjamin, Eugene Braunwald, Ben Brumpton, Archie Campbell, Nathalie Chami, Daniel I. Chasman
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Origin and de novo domestication of sweet orange Nat. Genet. (IF 31.7) Pub Date : 2025-03-05 Shengjun Liu, Yuantao Xu, Kun Yang, Yue Huang, Zhihao Lu, Shulin Chen, Xiang Gao, Gongao Xiao, Peng Chen, Xiuli Zeng, Lun Wang, Weikang Zheng, Zishuang Liu, Guanglian Liao, Fa He, Junjie Liu, Pengfei Wan, Fang Ding, Junli Ye, Wenbiao Jiao, Lijun Chai, Zhiyong Pan, Fei Zhang, Zongcheng Lin, Yanjun Zan, Wenwu Guo, Robert M. Larkin, Zongzhou Xie, Xia Wang, Xiuxin Deng, Qiang Xu
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Genome-wide association study meta-analysis provides insights into the etiology of heart failure and its subtypes Nat. Genet. (IF 31.7) Pub Date : 2025-03-04 Albert Henry, Xiaodong Mo, Chris Finan, Mark D. Chaffin, Doug Speed, Hanane Issa, Spiros Denaxas, James S. Ware, Sean L. Zheng, Anders Malarstig, Jasmine Gratton, Isabelle Bond, Carolina Roselli, David Miller, Sandesh Chopade, A. Floriaan Schmidt, Erik Abner, Lance Adams, Charlotte Andersson, Krishna G. Aragam, Johan Ärnlöv, Geraldine Asselin, Anna Axelsson Raja, Joshua D. Backman, Traci M. Bartz,