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Breaking down taurine Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-09-18 Grant Miura
N-acetyltaurine is a metabolite whose levels fluctuate with diet and exercise and that undergoes hydrolysis to form taurine and acetate. However, the enzymes that facilitate this reaction were not known. In an effort to address this, Wei et al. used liquid chromatography–mass spectrometry-based activity guided analysis of mouse tissues, detecting high N-acetyltaurine hydrolysis activity in kidney and
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Anti-aggregate activity Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-09-18 Russell Johnson
The formation of pathological protein aggregates occurs in many neurodegenerative diseases, such as the aggregation of the protein tau in patients with Alzheimer’s disease. Removing these aggregates offers a possible route to treat these protein misfolding diseases; however, targeting the aggregated form of a protein while sparing the monomeric form, which is required for normal cellular function,
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Sweet RNA Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-09-18 Yiyun Song
By coupling rPAL to enzymatic glycan cleavage and sequential window acquisition of all theoretical mass spectra (SWATH-MS), the team found that acp3U was the most enriched linker (although other putative linker substrates were identified). Importantly, knocking out DTWD2, an enzyme responsible for installing acp3U in tRNAs, reduced glycoRNA levels. This study provides not only a useful tool for glycoRNA
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An allosteric cyclin E-CDK2 site mapped by paralog hopping with covalent probes Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-09-18 Yuanjin Zhang, Zhonglin Liu, Marscha Hirschi, Oleg Brodsky, Eric Johnson, Sang Joon Won, Asako Nagata, Divya Bezwada, Matthew D. Petroski, Jaimeen D. Majmudar, Sherry Niessen, Todd VanArsdale, Adam M. Gilbert, Matthew M. Hayward, Al E. Stewart, Andrew R. Nager, Bruno Melillo, Benjamin F. Cravatt
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Targeting double-stranded nucleic acids using the λExo–pDNA system Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-18
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A developmental route to hematopoietic stem cells Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-18 Adam C. Wilkinson, Marella F. T. R. de Bruijn
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Bacteriophage λ exonuclease and a 5′-phosphorylated DNA guide allow PAM-independent targeting of double-stranded nucleic acids Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-18 Shengnan Fu, Junjie Li, Jing Chen, Linghao Zhang, Jiajia Liu, Huiyu Liu, Xin Su
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An experimental census of retrons for DNA production and genome editing Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-17 Asim G. Khan, Matías Rojas-Montero, Alejandro González-Delgado, Santiago C. Lopez, Rebecca F. Fang, Kate D. Crawford, Seth L. Shipman
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Multicellular artificial neural network-type architectures demonstrate computational problem solving Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-09-16 Deepro Bonnerjee, Saswata Chakraborty, Biyas Mukherjee, Ritwika Basu, Abhishek Paul, Sangram Bagh
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Biosynthesis of peptide–nucleobase hybrids in ribosomal peptides Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-09-16 Zeng-Fei Pei, Natalia M. Vior, Lingyang Zhu, Andrew W. Truman, Satish K. Nair
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ER-phagy restrains inflammatory responses through its receptor UBAC2. EMBO J. (IF 9.4) Pub Date : 2024-09-16 Xing He,Haowei He,Zitong Hou,Zheyu Wang,Qinglin Shi,Tao Zhou,Yaoxing Wu,Yunfei Qin,Jun Wang,Zhe Cai,Jun Cui,Shouheng Jin
ER-phagy, a selective form of autophagic degradation of endoplasmic reticulum (ER) fragments, plays an essential role in governing ER homeostasis. Dysregulation of ER-phagy is associated with the unfolded protein response (UPR), which is a major clue for evoking inflammatory diseases. However, the molecular mechanism underpinning the connection between ER-phagy and disease remains poorly defined. Here
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Non-autophagic Golgi-LC3 lipidation facilitates TFE3 stress response against Golgi dysfunction. EMBO J. (IF 9.4) Pub Date : 2024-09-16 Jaemin Kang,Cathena Meiling Li,Namhoon Kim,Jongyeon Baek,Yong-Keun Jung
Lipidated ATG8/LC3 proteins are recruited to single membrane compartments as well as autophagosomes, supporting their functions. Although recent studies have shown that Golgi-LC3 lipidation follows Golgi damage, its molecular mechanism and function under Golgi stress remain unknown. Here, by combining DLK1 overexpression as a new strategy for induction of Golgi-specific LC3 lipidation, and the application
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Acidity suppresses CD8 + T-cell function by perturbing IL-2, mTORC1, and c-Myc signaling. EMBO J. (IF 9.4) Pub Date : 2024-09-16 Romain Vuillefroy de Silly,Laetitia Pericou,Bili Seijo,Isaac Crespo,Melita Irving
CD8 + T cells have critical roles in tumor control, but a range of factors in their microenvironment such as low pH can suppress their function. Here, we demonstrate that acidity restricts T-cell expansion mainly through impairing IL-2 responsiveness, lowers cytokine secretion upon re-activation, and reduces the cytolytic capacity of CD8 + T cells expressing low-affinity TCR. We further find decreased
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Biotech news from around the world Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Researchers from Kenya’s Egerton University and Makerere University in Uganda begin a pilot program to mass breed desert locusts as a sustainable, protein-rich food source for animals and humans. The locusts are grown in giant domed-shaped, temperature- and humidity-controlled greenhouses equipped with wire gauze cages to stop them escaping. The Locust4Industry project aims to enable industrial exploitation
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FDA approves first IDH-targeted glioma drug Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Voranigo (vorasidenib), made by French drugmaker Servier Pharmaceuticals, was approved in August by the US Food and Drug Administration. The small-molecule isocitrate dehydrogenase-1 (IDH1) and isocitrate dehydrogenase-2 (IDH2) inhibitor has the go-ahead to treat patients with grade 2 astrocytoma or oligodendroglioma with IDH1 or IDH2 mutations. The approval follows a successful phase 3 trial showing
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Engineered parasite delivers therapeutic proteins to the mouse brain Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13 Iris Marchal
Macromolecular drugs have limited applications in the brain because they cannot cross the blood–brain barrier. A parasite that does have the natural capacity to travel to the brain is Toxoplasma gondii. In a study in Nature Microbiology, Bracha et al. make use of this feature, engineering T. gondii to deliver large proteins to the brains of mice. The authors targeted several proteins with different
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Genentech, Sangamo ink Alzheimer’s deal Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Genentech, part of Roche, has signed an exclusive license with Sangamo Therapeutics to develop genomic treatments for two neurodegenerative diseases. Sangamo will receive $50 million up front and could earn up to $1.9 billion in development and commercial milestone payments plus tiered royalties for its proprietary zinc finger repressors directed to the gene encoding the tau protein, which is involved
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Biogenetic Blooms: it’s microbial, and it’s art Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Nearly a century later, in a bungalow three blocks from the sun-baked crowds of Rockaway Beach, New York, Karen Ingram meticulously paints portraits of flower blossoms in a Petri dish using a medium of yeast. She calls her series “Biogenetic Blooms”: blue roses, yellow and orange daffodils, red tulips, pink orchids, columbines, snapdragons, irises, black-eyed Susans. The process is surprisingly tricky
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Targeting fatty acid metabolism promotes a healthy vaginal microbiome Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13 Iris Marchal
Specific microbial communities in the female genital tract are linked to health outcomes; for example, a microbiome deficient in Lactobacillus is observed in bacterial vaginosis. However, available therapies may not effectively promote the growth of beneficial bacterial species that could prevent the recurrence of disease. Writing in Cell, Zhu et al. propose that targeting unsaturated long-chain fatty
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From Bench to Podcast: Nicoletta Cieri Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
On this episode, our Associate Editor Cláudia Vilhena interviews Nicoletta Cieri, the first author of a great story on how a devised analytic framework can aid in the prevention of post-transplant disease recurrence. Join us as Nicoletta and Cláudia explore the highlights of the story, discuss the future of individualized medicine and touch base on future career opportunities following the postdoc
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Bioremediation Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Recent patents relating to compositions and methods for the remediation of polluted and contaminated environments.
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US selects first ten drugs for price drops Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
A historic law that negotiates price discounts for Medicare prescription drugs has led to the selection of the first ten drugs to be covered by these negotiations. From January 2026, enrollees will pay between 38% and 79% less for the ten commonly prescribed outpatient drugs. The negotiated prices are expected to save taxpayers billions of dollars. The biopharma industry, however, argues that the prices
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Intestinal organoids with an autologous immune compartment Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13 Iris Marchal
Although stem-cell derived organoids are useful tools for studying epithelial functions in health and disease, they generally lack the immune compartment critical for modeling organ-level processes. In a paper published in Nature, Recaldin et al. now integrate tissue-resident memory T (TRM) cells into human intestinal organoids and show how this model can be used to gain insight into drug-induced intestinal
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1H24 biotech job picture Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13 Michael Francisco
A semiannual snapshot of job expansions, reductions and availability in the biotech and pharma sectors.
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Enzymes boost ‘rock weathering’ to trap CO2 in soil Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Spreading powdered basalt on farmland traps CO2 from the atmosphere, a technology that is cheap, requires no huge steel reactors and, with a biotech boost, may even reduce fertilizer use.
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People Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Recent moves of note in and around the biotech and pharma industries.
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The prevalence of post-NDA drug patents and their relationship to the timing of generic approval Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13 Jonathan J. Darrow, Victor Van de Wiele, Beatrice Brown, Aaron S. Kesselheim
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A virtual case competition approach to bridging business acumen and biomedical graduate training Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13 Kara M. Donovan, Robert S. Goldsmith, Erica V. Ely, Samridhi Garg, Lloyd P. Ruiz, Mitre Athaiya, Sophia Meyer, Michelle Sydney Smith, Ishtiaq Mawla
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Foundation models build on ChatGPT tech to learn the fundamental language of biology Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Scientists are using ever more sophisticated AI algorithms trained on vast, unlabeled datasets to develop models that can ‘interpret’ biological data to help guide biomolecule design.
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The Wild West of spike-in normalization Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13 Lauren A. Patel, Yuwei Cao, Eric M. Mendenhall, Christopher Benner, Alon Goren
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Incorporation of nitrogen in antinutritional Solanum alkaloid biosynthesis Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-09-13 Dagny Grzech, Samuel J. Smit, Ryan M. Alam, Marianna Boccia, Yoko Nakamura, Benke Hong, Ranjit Barbole, Sarah Heinicke, Maritta Kunert, Wibke Seibt, Veit Grabe, Lorenzo Caputi, Benjamin R. Lichman, Sarah E. O’Connor, Asaph Aharoni, Prashant D. Sonawane
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Decoupled transcript and protein concentrations ensure histone homeostasis in different nutrients. EMBO J. (IF 9.4) Pub Date : 2024-09-13 Dimitra Chatzitheodoridou,Daniela Bureik,Francesco Padovani,Kalyan V Nadimpalli,Kurt M Schmoller
To maintain protein homeostasis in changing nutrient environments, cells must precisely control the amount of their proteins, despite the accompanying changes in cell growth and biosynthetic capacity. As nutrients are major regulators of cell cycle length and progression, a particular challenge arises for the nutrient-dependent regulation of 'cell cycle genes', which are periodically expressed during
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Entangling roles of cholesterol-dependent interaction and cholesterol-mediated lipid phase heterogeneity in regulating listeriolysin O pore-formation. Biochem. J. (IF 4.4) Pub Date : 2024-09-13 Kusum Lata,Gregor Anderluh,Kausik Chattopadhyay
Cholesterol-dependent cytolysins (CDCs) are the distinct class of β-barrel pore-forming toxins (β-PFTs) that attack eukaryotic cell membranes, and form large, oligomeric, transmembrane β-barrel pores. Listeriolysin O (LLO) is a prominent member in the CDC family. As documented for the other CDCs, membrane cholesterol is essential for the pore-forming functionality of LLO. However, it remains obscure
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Customizable gene sensing and response without altering endogenous coding sequences Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-09-12 Fabio Caliendo, Elvira Vitu, Junmin Wang, Shuo-Hsiu Kuo, Hayden Sandt, Casper Nørskov Enghuus, Jesse Tordoff, Neslly Estrada, James J. Collins, Ron Weiss
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Control of DNA demethylation by superoxide anion in plant stem cells Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-09-12 Shiwen Wang, Min Liu, Dongping Hu, Zhicheng Dong, Zhong Zhao
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Recoded gene circuits for multiplexed genetic code expansion Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-11
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Insights into lysophosphatidylserine recognition and Gα12/13-coupling specificity of P2Y10 Cell Chem. Bio. (IF 6.6) Pub Date : 2024-09-11 Han Yin, Nozomi Kamakura, Yu Qian, Manae Tatsumi, Tatsuya Ikuta, Jiale Liang, Zhenmei Xu, Ruixue Xia, Anqi Zhang, Changyou Guo, Asuka Inoue, Yuanzheng He
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Enriching productive mutational paths accelerates enzyme evolution Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-09-11 David Patsch, Thomas Schwander, Moritz Voss, Daniela Schaub, Sean Hüppi, Michael Eichenberger, Peter Stockinger, Lisa Schelbert, Sandro Giger, Francesca Peccati, Gonzalo Jiménez-Osés, Mojmír Mutný, Andreas Krause, Uwe T. Bornscheuer, Donald Hilvert, Rebecca M. Buller
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Substrate interactions guide cyclase engineering and lasso peptide diversification Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-09-11 Susanna E. Barrett, Song Yin, Peter Jordan, John K. Brunson, Jessica Gordon-Nunez, Gabriella Costa Machado da Cruz, Christopher Rosario, Bethany K. Okada, Kelsey Anderson, Thomas A. Pires, Ruoyang Wang, Diwakar Shukla, Mark J. Burk, Douglas A. Mitchell
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Dedifferentiating myoblasts back into a satellite cell state in vitro Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-11
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Organoid culture promotes dedifferentiation of mouse myoblasts into stem cells capable of complete muscle regeneration Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-11 Feodor D. Price, Mark N. Matyas, Andrew R. Gehrke, William Chen, Erica A. Wolin, Kristina M. Holton, Rebecca M. Gibbs, Alice Lee, Pooja S. Singu, Jeffrey S. Sakakeeny, James M. Poteracki, Kelsey Goune, Isabella T. Pfeiffer, Sarah A. Boswell, Peter K. Sorger, Mansi Srivastava, Kathleen Lindahl Pfaff, Emanuela Gussoni, Sean M. Buchanan, Lee L. Rubin
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Efficient genetic code expansion without host genome modifications Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-11 Alan Costello, Alexander A. Peterson, David L. Lanster, Zhiyi Li, Gavriela D. Carver, Ahmed H. Badran
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TNFSF14+ natural killer cells prevent spontaneous abortion by restricting leucine-mediated decidual stromal cell senescence. EMBO J. (IF 9.4) Pub Date : 2024-09-11 Jia-Wei Shi,Zhen-Zhen Lai,Wen-Jie Zhou,Hui-Li Yang,Tao Zhang,Jian-Song Sun,Jian-Yuan Zhao,Ming-Qing Li
In preparation for a potential pregnancy, the endometrium of the uterus changes into a temporary structure called the decidua. Senescent decidual stromal cells (DSCs) are enriched in the decidua during decidualization, but the underlying mechanisms of this process remain unclear. Here, we performed single-cell RNA transcriptomics on ESCs and DSCs and found that cell senescence during decidualization
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Systematic mapping of mitochondrial calcium uniporter channel (MCUC)-mediated calcium signaling networks. EMBO J. (IF 9.4) Pub Date : 2024-09-11 Hilda Delgado de la Herran,Denis Vecellio Reane,Yiming Cheng,Máté Katona,Fabian Hosp,Elisa Greotti,Jennifer Wettmarshausen,Maria Patron,Hermine Mohr,Natalia Prudente de Mello,Margarita Chudenkova,Matteo Gorza,Safal Walia,Michael Sheng-Fu Feng,Anja Leimpek,Dirk Mielenz,Natalia S Pellegata,Thomas Langer,György Hajnóczky,Matthias Mann,Marta Murgia,Fabiana Perocchi
The mitochondrial calcium uniporter channel (MCUC) mediates mitochondrial calcium entry, regulating energy metabolism and cell death. Although several MCUC components have been identified, the molecular basis of mitochondrial calcium signaling networks and their remodeling upon changes in uniporter activity have not been assessed. Here, we map the MCUC interactome under resting conditions and upon
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Interaction of chikungunya virus glycoproteins with macrophage factors controls virion production. EMBO J. (IF 9.4) Pub Date : 2024-09-11 Zhenlan Yao,Sangeetha Ramachandran,Serina Huang,Erin Kim,Yasaman Jami-Alahmadi,Prashant Kaushal,Mehdi Bouhaddou,James A Wohlschlegel,Melody Mh Li
Despite their role as innate sentinels, macrophages can serve as cellular reservoirs of chikungunya virus (CHIKV), a highly-pathogenic arthropod-borne alphavirus that has caused large outbreaks among human populations. Here, with the use of viral chimeras and evolutionary selection analysis, we define CHIKV glycoproteins E1 and E2 as critical for virion production in THP-1 derived human macrophages
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SENP3 mediates the deSUMOylation and degradation of YAP1 to regulate the progression of triple-negative breast cancer. J. Biol. Chem. (IF 4.0) Pub Date : 2024-09-11 Xu Chen,Danqing Li,Qi Su,Xing Ling,Yanyan Yang,Yuhang Liu,Xinjie Zhu,Anqi He,Siyu Ding,Runxiao Xu,Zhaoxia Liu,Xiaojun Long,Jinping Zhang,Zhihui Yang,Yitao Qi,Hongmei Wu
Triple-negative breast cancer (TNBC) is a prevalent malignancy in women, casting a formidable shadow on their well-being. Positioned within the nucleolus, SUMO-specific protease 3 (SENP3) assumes a pivotal role in the realms of development and tumorigenesis. However, the participation of SENP3 in TNBC remains a mystery. Here, we elucidate that SENP3 exerts inhibitory effects on migration and invasion
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USP11 deubiquitinates E-cadherin and maintains luminal fate of mammary tumor cells to suppress breast cancer. J. Biol. Chem. (IF 4.0) Pub Date : 2024-09-11 Tao Qian,Feng Bai,Shiwen Zhang,Yuping Xu,Yuchan Wang,Shuping Yuan,Xiong Liu,Yaru Du,Bin Peng,Wei-Guo Zhu,Xingzhi Xu,Xin-Hai Pei
Basal-like breast cancer may originate from luminal epithelial or cancerous cells. Inadequately repaired DNA damage impairs luminal differentiation and promotes aberrant luminal to basal trans-differentiation in mammary epithelial cells (MECs). Ubiquitin-specific peptidase 11 (USP11), a deubiquitinase, plays a critical role in DNA damage repair. The role of USP11 in controlling mammary cell differentiation
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Evolutionary and molecular basis of ADP-ribosylation reversal by zinc-dependent macrodomains. J. Biol. Chem. (IF 4.0) Pub Date : 2024-09-11 Antonio Ariza,Qiang Liu,Nathan Cowieson,Ivan Ahel,Dmitri V Filippov,Johannes Gregor Matthias Rack
Dynamic ADP-ribosylation signalling is a crucial pathway that controls fundamental cellular processes, in particular, the response to cellular stresses such as DNA damage, reactive oxygen species and infection. In some pathogenic microbes the response to oxidative stress is controlled by a SirTM/zinc-containing macrodomain (Zn-Macro) pair responsible for establishment and removal of the modification
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Three classes of propofol binding sites on GABAA receptors. J. Biol. Chem. (IF 4.0) Pub Date : 2024-09-11 Zi-Wei Chen,Satyanarayana M Chintala,John Bracamontes,Yusuke Sugasawa,Spencer R Pierce,Balazs R Varga,Edward H Smith,Christopher J Edge,Nicholas P Franks,Wayland Wl Cheng,Gustav Akk,Alex S Evers
Propofol is a widely used anesthetic and sedative that acts as a positive allosteric modulator (PAM) of gamma-aminobutyric acid type A (GABAA) receptors. Several potential propofol binding sites that may mediate this effect have been identified using propofol-analogue photoaffinity labeling. o-PD labels β-H267, a pore-lining residue, whereas AziPm labels residues β-M286, β-M227 and α-I239 in the two
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LAT1 supports mitotic progression through Golgi unlinking in an amino acid transport activity-independent manner. J. Biol. Chem. (IF 4.0) Pub Date : 2024-09-11 Sakura Yanagida,Ryuzaburo Yuki,Youhei Saito,Yuji Nakayama
Amino acid transporters play a vital role in cellular homeostasis by maintaining protein synthesis. L-type amino acid transporter 1 (LAT1/SLC7A5/CD98lc) is a major transporter of large neutral amino acids in cancer cells because of its predominant expression. Although amino acid restriction with various amino acid analog treatments is known to induce mitotic defects, the involvement of amino acid transporters
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Chemical induction of the interaction between AIMP2-DX2 and Siah1 to enhance ubiquitination Cell Chem. Bio. (IF 6.6) Pub Date : 2024-09-10 Dae Gyu Kim, Minkyoung Kim, Ja-il Goo, Jiwon Kong, Dipesh S. Harmalkar, Qili Lu, Aneesh Sivaraman, Hossam Nada, Sreenivasulu Godesi, Hwayoung Lee, Mo Eun Song, Eunjoo Song, Kang-Hyun Han, Woojin Kim, Pilhan Kim, Won Jun Choi, Chang Hoon Lee, Sunkyung Lee, Yongseok Choi, Sunghoon Kim, Kyeong Lee
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ER membrane remodeling by targeting RTN4 induces pyroptosis to facilitate antitumor immune. Protein Cell (IF 13.6) Pub Date : 2024-09-10 Mei-Mei Zhao,Ting-Ting Ren,Jing-Kang Wang,Lu Yao,Ting-Ting Liu,Ji-Chao Zhang,Yang Liu,Lan Yuan,Dan Liu,Jiu-Hui Xu,Peng-Fei Tu,Xiao-Dong Tang,Ke-Wu Zeng
Pyroptosis is an identified programmed cell death that has been highly linked to endoplasmic reticulum (ER) dynamics. However, the crucial proteins for modulating dynamic ER membrane curvature change that trigger pyroptosis are currently not well understood. In this study, a biotin-labeled chemical probe of potent pyroptosis inducer α-mangostin (α-MG) was synthesized. Through protein microarray analysis
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The global phosphorylation landscape of mouse oocytes during meiotic maturation. EMBO J. (IF 9.4) Pub Date : 2024-09-10 Hongzheng Sun,Longsen Han,Yueshuai Guo,Huiqing An,Bing Wang,Xiangzheng Zhang,Jiashuo Li,Yingtong Jiang,Yue Wang,Guangyi Sun,Shuai Zhu,Shoubin Tang,Juan Ge,Minjian Chen,Xuejiang Guo,Qiang Wang
Phosphorylation is a key post-translational modification regulating protein function and biological outcomes. However, the phosphorylation dynamics orchestrating mammalian oocyte development remains poorly understood. In the present study, we apply high-resolution mass spectrometry-based phosphoproteomics to obtain the first global in vivo quantification of mouse oocyte phosphorylation. Of more than
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Nitrogen signaling factor triggers a respiration-like gene expression program in fission yeast. EMBO J. (IF 9.4) Pub Date : 2024-09-10 Shin Ohsawa,Michaela Schwaiger,Vytautas Iesmantavicius,Rio Hashimoto,Hiromitsu Moriyama,Hiroaki Matoba,Go Hirai,Mikiko Sodeoka,Atsushi Hashimoto,Akihisa Matsuyama,Minoru Yoshida,Yoko Yashiroda,Marc Bühler
Microbes have evolved intricate communication systems that enable individual cells of a population to send and receive signals in response to changes in their immediate environment. In the fission yeast Schizosaccharomyces pombe, the oxylipin nitrogen signaling factor (NSF) is part of such communication system, which functions to regulate the usage of different nitrogen sources. Yet, the pathways and
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Heteroplasmy in action: tracking mtDNA segregation dynamics. EMBO J. (IF 9.4) Pub Date : 2024-09-10 Nitish Dua,Anjana Badrinarayanan
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New targets and designed inhibitors of ASAP Arf-GAPs derived from structural characterization of the ASAP1/440-kD ankyrin-B interaction. J. Biol. Chem. (IF 4.0) Pub Date : 2024-09-10 Yubing Li,Yipeng Zhao,Yaojun He,Fang Liu,Lu Xia,Kai Liu,Mingjie Zhang,Keyu Chen
ASAP1 and its paralog ASAP2 belong to a PI4,5P2-dependent Arf GTPase-activating protein (Arf-GAP) family capable of modulating membrane and cytoskeletal dynamics. ASAPs regulate cell adhesive structures such as invadosomes and focal adhesions during cell attachment and migration. Malfunctioning of ASAP1 has been implicated in the malignant phenotypes of various cancers. Here, we discovered that the
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Modeling protease-sensitive human pancreatic lipase mutations in the mouse ortholog. J. Biol. Chem. (IF 4.0) Pub Date : 2024-09-10 Gyula Hoffka,Samara Mhana,Marcell Vas,Vanda Toldi,János András Mótyán,József Tőzsér,András Szabó
Pancreatic lipase (PNLIP) is the major lipolytic enzyme secreted by the pancreas. A recent study identified human PNLIP variants P245A, I265R, F300L, S304F, and F314L in European chronic pancreatitis cohorts. Functional analyses indicated that the variants were normally secreted but exhibited reduced stability when exposed to pancreatic proteases. Proteolysis of the PNLIP variants yielded an intact
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Phage genome engineering with retrons Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-09 Ilya Osterman, Rotem Sorek
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Proteolysis of tau by granzyme A in tauopathies generates fragments that are aggregation prone. Biochem. J. (IF 4.4) Pub Date : 2024-09-18 James P Quinn,Kate Fisher,Nicola Corbett,Stacey Warwood,David Knight,Katherine A B Kellett,Nigel M Hooper
Tauopathies, including Alzheimer's disease, corticobasal degeneration and progressive supranuclear palsy, are characterised by the aggregation of tau into insoluble neurofibrillary tangles in the brain. Tau is subject to a range of post-translational modifications, including proteolysis, that can promote its aggregation. Neuroinflammation is a hallmark of tauopathies and evidence is growing for a role
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Structural basis for the type I-F Cas8-HNH system. EMBO J. (IF 9.4) Pub Date : 2024-09-09 Xuzichao Li,Yanan Liu,Jie Han,Lingling Zhang,Zhikun Liu,Lin Wang,Shuqin Zhang,Qian Zhang,Pengyu Fu,Hang Yin,Hongtao Zhu,Heng Zhang
The Cas3 nuclease is utilized by canonical type I CRISPR-Cas systems for processive target DNA degradation, while a newly identified type I-F CRISPR variant employs an HNH nuclease domain from the natural fusion Cas8-HNH protein for precise target cleavage both in vitro and in human cells. Here, we report multiple cryo-electron microscopy structures of the type I-F Cas8-HNH system at different functional