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Complex structure and activation mechanism of arginine kinase McsB by McsA Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-09-04 Kai Lu, Bingnan Luo, Xuan Tao, Yongbo Luo, Mingjun Ao, Bin Zheng, Xiang Xu, Xiaoyan Ma, Jingling Niu, Huinan Li, Yanxuan Xie, Zhennan Zhao, Peng Zheng, Guanbo Wang, Song Gao, Chao Wang, Wei Xia, Zhaoming Su, Zong-Wan Mao
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Endogenous cell membrane interactome mapping for the GLP-1 receptor in different cell types Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-09-03 Ting Dang, Jie Yu, Zhihe Cao, Bingjie Zhang, Shanshan Li, Ye Xin, Lingyun Yang, Ronghui Lou, Min Zhuang, Wenqing Shui
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An engineered trafficking biosensor reveals a role for DNAJC13 in DOR downregulation Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-09-02 Brandon Novy, Aleksandra Dagunts, Tatum Weishaar, Emily E. Holland, Hayden Adoff, Emily Hutchinson, Monica De Maria, Martin Kampmann, Nikoleta G. Tsvetanova, Braden T. Lobingier
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Direct inhibition of tumor hypoxia response with synthetic transcriptional repressors Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-30 Zeyu Qiao, Long C. Nguyen, Dongbo Yang, Christopher Dann, Deborah M. Thomas, Madeline Henn, Andrea Valdespino, Colin S. Swenson, Scott A. Oakes, Marsha Rich Rosner, Raymond E. Moellering
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Engineering artificial non-coding RNAs for targeted protein degradation Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-30 Congcong Cao, Aolin Li, Chaojie Xu, Baorui Wu, Lin Yao, Yuchen Liu
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µMap proximity labeling in living cells reveals stress granule disassembly mechanisms Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-30 Chenmengxiao (Roderick) Pan, Steve D. Knutson, Sean W. Huth, David W. C. MacMillan
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Genetic control over biogenic crystal morphogenesis in zebrafish Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-30 Rachael Deis, Tali Lerer-Goldshtein, Olha Baiko, Zohar Eyal, Dolev Brenman-Begin, Moshe Goldsmith, Sylvia Kaufmann, Uwe Heinig, Yonghui Dong, Sofya Lushchekina, Neta Varsano, Tsviya Olender, Meital Kupervaser, Ziv Porat, Smadar Levin-Zaidman, Iddo Pinkas, Rita Mateus, Dvir Gur
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Coaching LSD1 to ignore acetylation Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-28 Joshua C. Black, Tatiana G. Kutateladze
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Author Correction: Balancing G protein selectivity and efficacy in the adenosine A2A receptor. Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-28 Louis-Philippe Picard,Alexander Orazietti,Duy Phuoc Tran,Andrejs Tucs,Sari Hagimoto,Zhenzhou Qi,Shuya Kate Huang,Koji Tsuda,Akio Kitao,Adnan Sljoka,R Scott Prosser
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Massively parallel measurement of protein–protein interactions by sequencing using MP3-seq Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-27 Alexandr Baryshev, Alyssa La Fleur, Benjamin Groves, Cirstyn Michel, David Baker, Ajasja Ljubetič, Georg Seelig
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Structural basis for intermodular communication in assembly-line polyketide biosynthesis Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-23 Dillon P. Cogan, Alexander M. Soohoo, Muyuan Chen, Yan Liu, Krystal L. Brodsky, Chaitan Khosla
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Degradable living plastics programmed by engineered spores Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-21 Chenwang Tang, Lin Wang, Jing Sun, Guangda Chen, Junfeng Shen, Liang Wang, Ying Han, Jiren Luo, Zhiying Li, Pei Zhang, Simin Zeng, Dianpeng Qi, Jin Geng, Ji Liu, Zhuojun Dai
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A pathway revisited Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-20 Gene Chong
Defects in protein glycosylation and glycan metabolism lead to congenital disorders of glycosylation (CDGs). A key step in N-glycosylation involves the lipid dolichol, which in its phosphorylated form acts as a carrier of glycans to be transferred onto proteins. Previously, dolichol was thought to be directly synthesized from polyprenol by the enzyme SRD5A3. Wilson et al. have now reported a revision
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Lipids on the move Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-20 Majda Bratovič
Lipid transport between organelles is essential for many biological processes and usually proceeds at membrane contact sites via lipid transfer proteins (LTPs). This process is challenging to study as most current approaches for tracking intracellular lipid transport are indirect, and it is unclear if the insights obtained in vitro are translatable to cellular settings. To address this, Luan, Liang
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Polymers produced with depolymerase Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-20 Russell Johnson
Many plastics do not degrade in the environment. Switching production to biodegradable and compostable polymers offers a route to design an inherently limited lifetime into plastics and thereby ensure that the waste plastic does not persist in the environment. Polylactide (PLA) is a widely used biopolymer, but it is efficiently degraded only under industrial composting conditions at high temperatures;
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Artificial boron enzymes Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-16 Xiao-Wang Chen, Zhiyu Bo, Yang Yang
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Engineered IscB–ωRNA system with expanded target range for base editing Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-15 Qingquan Xiao, Guoling Li, Dingyi Han, Haoqiang Wang, Mingyu Yao, Tingting Ma, Jingxing Zhou, Yu Zhang, Xiumei Zhang, Bingbing He, Yuan Yuan, Linyu Shi, Tong Li, Hui Yang, Jinhai Huang, Hainan Zhang
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One-carbon footprint in B cells Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-13 Rebekah Steiner, Julia Jellusova
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Shifting redox reaction equilibria on demand using an orthogonal redox cofactor Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-13 Derek Aspacio, Yulai Zhang, Youtian Cui, Emma Luu, Edward King, William B. Black, Sean Perea, Qiang Zhu, Yongxian Wu, Ray Luo, Justin B. Siegel, Han Li
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Persistent glucose consumption under antibiotic treatment protects bacterial community Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-13 Yuzhen Zhang, Yumin Cai, Xin Jin, Qile Wu, Fan Bai, Jintao Liu
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Single-cell sensor analyses reveal signaling programs enabling Ras-G12C drug resistance Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-05 Jason Z. Zhang, Shao-En Ong, David Baker, Dustin J. Maly
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A natural small molecule alleviates liver fibrosis by targeting apolipoprotein L2 Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-05 Lu Gan, Qiwei Jiang, Dong Huang, Xueji Wu, Xinying Zhu, Lei Wang, Wei Xie, Jialuo Huang, Runzhu Fan, Yihang Jing, Guihua Tang, Xiang David Li, Jianping Guo, Sheng Yin
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Nanometer-resolution tracking of single cargo reveals dynein motor mechanisms Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-01 Chunte Sam Peng, Yunxiang Zhang, Qian Liu, G. Edward Marti, Yu-Wen Alvin Huang, Thomas C. Südhof, Bianxiao Cui, Steven Chu
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Photoproximity labeling of endogenous receptors in the live mouse brain in minutes Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-01 Mikiko Takato, Seiji Sakamoto, Hiroshi Nonaka, Fátima Yuri Tanimura Valor, Tomonori Tamura, Itaru Hamachi
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Author Correction: Engineering a precise adenine base editor with minimal bystander editing. Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-08-01 Liang Chen,Shun Zhang,Niannian Xue,Mengjia Hong,Xiaohui Zhang,Dan Zhang,Jing Yang,Sijia Bai,Yifan Huang,Haowei Meng,Hao Wu,Changming Luan,Biyun Zhu,Gaomeng Ru,Hongyi Gao,Liping Zhong,Meizhen Liu,Mingyao Liu,Yiyun Cheng,Chengqi Yi,Liren Wang,Yongxiang Zhao,Gaojie Song,Dali Li
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Balancing G protein selectivity and efficacy in the adenosine A2A receptor Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-31 Louis-Philippe Picard, Alexander Orazietti, Duy Phuoc Tran, Andrejs Tucs, Sari Hagimoto, Zhenzhou Qi, Shuya Kate Huang, Koji Tsuda, Akio Kitao, Adnan Sljoka, R. Scott Prosser
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Making use of machine learning Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-30
Computational methods for calculating a protein structure from a given amino acid sequence have revolutionized both our understanding of structural biology and the prediction of protein-binding compounds. This issue features several pieces that explore machine learning approaches for protein structure prediction, benchmarking and evaluation of model quality, and how machine learning algorithms can
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Solving the mystery of enediyne biosynthesis Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-30 Max B. Sosa, Michelle C. Y. Chang
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A place to dock Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-29 Grant Miura
The development of deep learning tools such as AlphaFold2 (AF2), which enable structural predictions of proteins with high confidence, provides a potential alternative or substitute for experimentally derived structures. AF2 was also envisioned to help identify new ligands through virtual screening. However, retrospective docking analysis comparing AF2-generated versus experimental structures revealed
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Under pressure Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-29 Gene Chong
Deep-sea animals live under high pressure and low temperature, but the molecular adaptations to these conditions are not known. Winnikoff et al. have now identified lipid properties that enable different comb jelly (ctenophore) species to adapt to different ocean depths. The authors analyzed tissue from ctenophores collected at different depths from 0 to 4000 m and temperatures at tropical, temperate
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RNA-guided recombination Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-29 Yiyun Song
Insertion sequences (ISs) are short DNA sequences that can autonomously move within genomes. Although most IS elements show no sequence specificity during transposition, two IS families, IS110 and IS1111, exhibit exceptional target site selectivity. Research from two separate groups has revealed that the sequence specificity of these two families originates from their expression of non-coding RNAs
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Making transient complexes stick Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-29 YiYu Wang, M. S. S. Vinod Mouli, Min Ma, Fleur M. Ferguson
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CRISPR-repressed toxin–antitoxin provides herd immunity against anti-CRISPR elements Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-29 Xian Shu, Rui Wang, Zhihua Li, Qiong Xue, Jiajun Wang, Jingfang Liu, Feiyue Cheng, Chao Liu, Huiwei Zhao, Chunyi Hu, Jie Li, Songying Ouyang, Ming Li
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Template-assisted covalent modification underlies activity of covalent molecular glues Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-29 Yen-Der Li, Michelle W. Ma, Muhammad Murtaza Hassan, Moritz Hunkeler, Mingxing Teng, Kedar Puvar, Justine C. Rutter, Ryan J. Lumpkin, Brittany Sandoval, Cyrus Y. Jin, Anna M. Schmoker, Scott B. Ficarro, Hakyung Cheong, Rebecca J. Metivier, Michelle Y. Wang, Shawn Xu, Woong Sub Byun, Brian J. Groendyke, Inchul You, Logan H. Sigua, Isidoro Tavares, Charles Zou, Jonathan M. Tsai, Paul M. C. Park, Hojong
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Splice-modifying drug mechanisms Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-26 Jorge Herrero-Vicente, Douglas L. Black, Juan Valcárcel
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Direct RAS inhibitors turn 10 Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-26 Jonathan M. L. Ostrem, Ulf Peters, Kevan M. Shokat
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Metabolic determinants of germinal center B cell formation and responses Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-26 Jun Wu, Jiawen Zhou, Gen Li, Xuan Sun, Chen Xiang, Haiyan Chen, Peng Jiang
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Phospholipid biosynthesis modulates nucleotide metabolism and reductive capacity Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-26 Yibing Zhu, Xiaomeng Tong, Jingyuan Xue, Hong Qiu, Dan Zhang, Dao-Qiong Zheng, Zong-Cai Tu, Cunqi Ye
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Restoring susceptibility to β-lactam antibiotics in methicillin-resistant Staphylococcus aureus Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-26 Van T. Nguyen, Biruk T. Birhanu, Vega Miguel-Ruano, Choon Kim, Mayte Batuecas, Jingdong Yang, Amr M. El-Araby, Eva Jiménez-Faraco, Valerie A. Schroeder, Alejandra Alba, Neha Rana, Safaa Sader, Caitlyn A. Thomas, Rhona Feltzer, Mijoon Lee, Jed F. Fisher, Juan A. Hermoso, Mayland Chang, Shahriar Mobashery
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Genetically engineered synthetic cells activate cargo release upon temperature shift Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-25
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Unlocking saponin biosynthesis in soapwort Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-23 Seohyun Jo, Amr El-Demerdash, Charlotte Owen, Vikas Srivastava, Dewei Wu, Shingo Kikuchi, James Reed, Hannah Hodgson, Alex Harkess, Shengqiang Shu, Chris Plott, Jerry Jenkins, Melissa Williams, Lori-Beth Boston, Elia Lacchini, Tongtong Qu, Alain Goossens, Jane Grimwood, Jeremy Schmutz, Jim Leebens-Mack, Anne Osbourn
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Targeting Smurf1 to block PDK1–Akt signaling in KRAS-mutated colorectal cancer Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-22 Zhiqiang Peng, Wei Fang, Bo Wu, Ming He, Shaohua Li, Jun Wei, Yang Hao, Lujia Jin, Mingqiu Liu, Xin Zhang, Yange Wei, Yingwei Ge, Yinghua Wei, Haili Qian, Yangjun Zhang, Junyi Jiang, Zhijie Chang, Yu Rao, Xueli Zhang, Chun-Ping Cui, Lingqiang Zhang
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Macrolones target bacterial ribosomes and DNA gyrase and can evade resistance mechanisms Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-22 Elena V. Aleksandrova, Cong-Xuan Ma, Dorota Klepacki, Faezeh Alizadeh, Nora Vázquez-Laslop, Jian-Hua Liang, Yury S. Polikanov, Alexander S. Mankin
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Inter-kingdom electromechanical communication Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-19 Joshua T. Atkinson
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Machine learning in preclinical drug discovery Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-19 Denise B. Catacutan, Jeremie Alexander, Autumn Arnold, Jonathan M. Stokes
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Lysine l-lactylation is the dominant lactylation isomer induced by glycolysis Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-19 Di Zhang, Jinjun Gao, Zhijun Zhu, Qianying Mao, Zhiqiang Xu, Pankaj K. Singh, Cornelius C. Rimayi, Carlos Moreno-Yruela, Shuling Xu, Gongyu Li, Yi-Cheng Sin, Yue Chen, Christian A. Olsen, Nathaniel W. Snyder, Lunzhi Dai, Lingjun Li, Yingming Zhao
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Direct observation of prion-like propagation of protein misfolding templated by pathogenic mutants Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-15 Krishna Neupane, Abhishek Narayan, Supratik Sen Mojumdar, Gaurav Adhikari, Craig R. Garen, Michael T. Woodside
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The power supply for biological nitrogen fixation Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-10 Günter Fritz, Peter M. H. Kroneck, Julia Steuber
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Simultaneous multi-site editing of individual genomes using retron arrays Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-09 Alejandro González-Delgado, Santiago C. Lopez, Matías Rojas-Montero, Chloe B. Fishman, Seth L. Shipman
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An alternative mechanism for recruiting Cas2/3 in a phage-encoded CRISPR–Cas system Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-08
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Distinct phases of cellular signaling revealed by time-resolved protein synthesis Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-08 Gihoon Lee, Tom W. Muir
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Engineering miniature IscB nickase for robust base editing with broad targeting range Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-08 Linxiao Han, Yueer Hu, Qiqin Mo, Hao Yang, Feng Gu, Fang Bai, Yadong Sun, Hanhui Ma
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Cas1 mediates the interference stage in a phage-encoded CRISPR–Cas system Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-08 Laixing Zhang, Hao Wang, Jianwei Zeng, Xueli Cao, Zhengyu Gao, Zihe Liu, Feixue Li, Jiawei Wang, Yi Zhang, Maojun Yang, Yue Feng
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Assessing and engineering the IscB–ωRNA system for programmed genome editing Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-08 Hao Yan, Xiaoqing Tan, Siyuan Zou, Yihong Sun, Ailong Ke, Weixin Tang
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Programmed RNA editing with an evolved bacterial adenosine deaminase Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-05 Hao Yan, Weixin Tang
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Genetically programmed synthetic cells for thermo-responsive protein synthesis and cargo release Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-05 Carolina Monck, Yuval Elani, Francesca Ceroni
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Uncoupling histone modification crosstalk by engineering lysine demethylase LSD1 Nat. Chem. Biol. (IF 12.9) Pub Date : 2024-07-04 Kwangwoon Lee, Marco Barone, Amanda L. Waterbury, Hanjie Jiang, Eunju Nam, Sarah E. DuBois-Coyne, Samuel D. Whedon, Zhipeng A. Wang, Jonatan Caroli, Katherine Neal, Brian Ibeabuchi, Zuzer Dhoondia, Mitzi I. Kuroda, Brian B. Liau, Samuel Beck, Andrea Mattevi, Philip A. Cole