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Partial in vivo reprogramming enables injury-free intestinal regeneration via autonomous Ptgs1 induction Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Jumee Kim, Somi Kim, Seung-Yeon Lee, Beom-Ki Jo, Ji-Young Oh, Eun-Ji Kwon, Keun-Tae Kim, Anish Ashok Adpaikar, Eun-Jung Kim, Han-Sung Jung, Hwa-Ryeon Kim, Jae-Seok Roe, Chang Pyo Hong, Jong Kyoung Kim, Bon-Kyoung Koo, Hyuk-Jin Cha
Tissue regeneration after injury involves the dedifferentiation of somatic cells, a natural adaptive reprogramming that leads to the emergence of injury-responsive cells with fetal-like characteristics. However, there is no direct evidence that adaptive reprogramming involves a shared molecular mechanism with direct cellular reprogramming. Here, we induced dedifferentiation of intestinal epithelial
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Intestinal Paneth cell differentiation relies on asymmetric regulation of Wnt signaling by Daam1/2 Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Gabriele Colozza, Heetak Lee, Alessandra Merenda, Szu-Hsien Sam Wu, Andrea Català-Bordes, Tomasz W. Radaszkiewicz, Ingrid Jordens, Ji-Hyun Lee, Aileen-Diane Bamford, Fiona Farnhammer, Teck Yew Low, Madelon M. Maurice, Vítězslav Bryja, Jihoon Kim, Bon-Kyoung Koo
The mammalian intestine is one of the most rapidly self-renewing tissues, driven by stem cells residing at the crypt bottom. Paneth cells form a major element of the niche microenvironment providing various growth factors to orchestrate intestinal stem cell homeostasis, such as Wnt3. Different Wnt ligands can selectively activate β-catenin–dependent (canonical) or –independent (noncanonical) signaling
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Strain-induced crystallization and phase separation used for fabricating a tough and stiff slide-ring solid polymer electrolyte Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Kei Hashimoto, Toru Shiwaku, Hiroyuki Aoki, Hideaki Yokoyama, Koichi Mayumi, Kohzo Ito
The demand for mechanically robust polymer-based electrolytes is increasing for applications to wearable devices. Young’s modulus and breaking energy are essential parameters for describing the mechanical reliability of electrolytes. The former plays a vital role in suppressing the short circuit during charge-discharge, while the latter indicates crack propagation resistance. However, polymer electrolytes
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Invasive Staphylococcus epidermidis uses a unique processive wall teichoic acid glycosyltransferase to evade immune recognition Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Yinglan Guo, Xin Du, Janes Krusche, Christian Beck, Sara Ali, Axel Walter, Volker Winstel, Christoph Mayer, Jeroen D. C. Codée, Andreas Peschel, Thilo Stehle
Staphylococcus epidermidis expresses glycerol phosphate wall teichoic acid (WTA), but some health care–associated methicillin-resistant S. epidermidis (HA-MRSE) clones produce a second, ribitol phosphate (RboP) WTA, resembling that of the aggressive pathogen Staphylococcus aureus . RboP-WTA promotes HA-MRSE persistence and virulence in bloodstream infections. We report here that the TarM enzyme of
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CDK4/6 inhibition enhances SHP2 inhibitor efficacy and is dependent upon RB function in malignant peripheral nerve sheath tumors Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Jiawan Wang, Ana Calizo, Lindy Zhang, James C. Pino, Yang Lyu, Kai Pollard, Xiaochun Zhang, Alex T. Larsson, Eric Conniff, Nicolas J. Llosa, David K. Wood, David A. Largaespada, Susan E. Moody, Sara J. Gosline, Angela C. Hirbe, Christine A. Pratilas
Malignant peripheral nerve sheath tumors (MPNSTs) are highly aggressive soft tissue sarcomas with limited treatment options, and new effective therapeutic strategies are desperately needed. We observe antiproliferative potency of genetic depletion of PTPN11 or pharmacological inhibition using the SHP2 inhibitor (SHP2i) TNO155. Our studies into the signaling response to SHP2i reveal that resistance
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Strain-switchable field-induced superconductivity Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Joshua J. Sanchez, Gilberto Fabbris, Yongseong Choi, Jonathan M. DeStefano, Elliott Rosenberg, Yue Shi, Paul Malinowski, Yina Huang, Igor I. Mazin, Jong-Woo Kim, Jiun-Haw Chu, Philip J. Ryan
Field-induced superconductivity is a rare phenomenon where an applied magnetic field enhances or induces superconductivity. Here, we use applied stress as a control switch between a field-tunable superconducting state and a robust non–field-tunable state. This marks the first demonstration of a strain-tunable superconducting spin valve with infinite magnetoresistance. We combine tunable uniaxial stress
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Mapping cardiac remodeling in chronic kidney disease Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Nadine Kaesler, Mingbo Cheng, James Nagai, James O’Sullivan, Fabian Peisker, Eric M. J. Bindels, Anne Babler, Julia Moellmann, Patrick Droste, Giulia Franciosa, Aurelien Dugourd, Julio Saez-Rodriguez, Sabine Neuss, Michael Lehrke, Peter Boor, Claudia Goettsch, Jesper V. Olsen, Thimoteus Speer, Tzong-Shi Lu, Kenneth Lim, Jürgen Floege, Laura Denby, Ivan Costa, Rafael Kramann
Patients with advanced chronic kidney disease (CKD) mostly die from sudden cardiac death and recurrent heart failure. The mechanisms of cardiac remodeling are largely unclear. To dissect molecular and cellular mechanisms of cardiac remodeling in CKD in an unbiased fashion, we performed left ventricular single-nuclear RNA sequencing in two mouse models of CKD. Our data showed a hypertrophic response
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Mature mRNA processing that deletes 3′ end sequences directs translational activation and embryonic development Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Yuki Takada, Ludivine Fierro, Keisuke Sato, Takahiro Sanada, Anna Ishii, Takehiro Yamamoto, Tomoya Kotani
Eggs accumulate thousands of translationally repressed mRNAs that are translated into proteins after fertilization to direct diverse developmental processes. However, molecular mechanisms underlying the translation of stored mRNAs after fertilization remain unclear. Here, we report a previously unknown RNA processing of 3′ end sequences of mature mRNAs that activates the translation of stored mRNAs
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Accurate prediction of HLA class II antigen presentation across all loci using tailored data acquisition and refined machine learning Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Jonas B. Nilsson, Saghar Kaabinejadian, Hooman Yari, Michel G. D. Kester, Peter van Balen, William H. Hildebrand, Morten Nielsen
Accurate prediction of antigen presentation by human leukocyte antigen (HLA) class II molecules is crucial for rational development of immunotherapies and vaccines targeting CD4 + T cell activation. So far, most prediction methods for HLA class II antigen presentation have focused on HLA-DR because of limited availability of immunopeptidomics data for HLA-DQ and HLA-DP while not taking into account
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Topological transitions of the generalized Pancharatnam-Berry phase Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Manuel F. Ferrer-Garcia, Kyrylo Snizhko, Alessio D’Errico, Alessandro Romito, Yuval Gefen, Ebrahim Karimi
Distinct from the dynamical phase, in a cyclic evolution, a system’s state may acquire an additional component, a.k.a. geometric phase. Recently, it has been demonstrated that geometric phases can be induced by a sequence of generalized measurements implemented on a single qubit. Furthermore, it has been predicted that these geometric phases may exhibit a topological transition as a function of the
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Satellite mapping of red snow on North American glaciers Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Casey B. Engstrom, Lynne M. Quarmby
Red snow caused by blooms of microalgae darkens the surface of summer snowfields, increasing snowmelt. To assess the contribution of red snow to supraglacial snowmelt in northwestern North America, we systematically mapped the 2019–2022 distribution of blooms by applying supervised classification to 6158 satellite images. Blooms occurred on 5% of the total glaciated area, heavily affecting many glaciers
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Anthropogenic warming induced intensification of summer monsoon frontal precipitation over East Asia Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Suyeon Moon, Nobuyuki Utsumi, Jee-Hoon Jeong, Jin-Ho Yoon, S.-Y. Simon Wang, Hideo Shiogama, Hyungjun Kim
Summer monsoon frontal rainfall in East Asia (EA) is crucial for water resources and flood hazards in densely populated areas. Recent studies have documented the increasing intensity of summer frontal rainfall over recent decades. However, the extent of ongoing climate change on the intensification of the EA frontal precipitation system remains uncertain. Using an objective method for detecting frontal
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MicroRNA-92a–CPEB3 axis protects neurons against inflammatory neurodegeneration Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Iris Winkler, Jan Broder Engler, Vanessa Vieira, Simone Bauer, Yi-Hsiang Liu, Giovanni Di Liberto, Katarzyna M. Grochowska, Ingrid Wagner, Jasmina Bier, Lukas C. Bal, Nicola Rothammer, Nina Meurs, Kristof Egervari, Benjamin Schattling, Gabriela Salinas, Michael R. Kreutz, Yi-Shuian Huang, Ole Pless, Doron Merkler, Manuel A. Friese
Neuroinflammation causes neuronal injury in multiple sclerosis (MS) and other neurological diseases. MicroRNAs (miRNAs) are important modulators of neuronal stress responses, but knowledge about their contribution to neuronal protection or damage during inflammation is limited. Here, we constructed a regulatory miRNA–mRNA network of inflamed motor neurons by leveraging cell type–specific miRNA and
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DGKα/ζ inhibition lowers the TCR affinity threshold and potentiates antitumor immunity Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Rakeeb Kureshi, Elisa Bello, Courtney T.S. Kureshi, Michael J. Walsh, Victoria Lippert, Megan T. Hoffman, Michael Dougan, Tyler Longmire, Michael Wichroski, Stephanie K. Dougan
Diacylglycerol kinases (DGKs) attenuate diacylglycerol (DAG) signaling by converting DAG to phosphatidic acid, thereby suppressing pathways downstream of T cell receptor signaling. Using a dual DGKα/ζ inhibitor (DGKi), tumor-specific CD8 T cells with different affinities (TRP1 high and TRP1 low ), and altered peptide ligands, we demonstrate that inhibition of DGKα/ζ can lower the signaling threshold
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Neurodevelopmental defects in human cortical organoids with N -acetylneuraminic acid synthase mutation Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Qian Bu, Yanping Dai, Huaqin Zhang, Min Li, Haxiaoyu Liu, Yan Huang, Ailing Zeng, Feng Qin, Linhong Jiang, Liang Wang, Yaxing Chen, Hongchun Li, Xiaojie Wang, Yue Zhao, Meng Qin, Ying Zhao, Ni Zhang, Weihong Kuang, Yinglan Zhao, Xiaobo Cen
Biallelic genetic variants in N -acetylneuraminic acid synthase ( NANS ), a critical enzyme in endogenous sialic acid biosynthesis, are clinically associated with neurodevelopmental disorders. However, the mechanism underlying the neuropathological consequences has remained elusive. Here, we found that NANS mutation resulted in the absence of both sialic acid and protein polysialylation in the cortical
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Coherent light control of a metastable hidden state Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Julian Maklar, Jit Sarkar, Shuo Dong, Yaroslav A. Gerasimenko, Tommaso Pincelli, Samuel Beaulieu, Patrick S. Kirchmann, Jonathan A. Sobota, Shuolong Yang, Dominik Leuenberger, Robert G. Moore, Zhi-Xun Shen, Martin Wolf, Dragan Mihailovic, Ralph Ernstorfer, Laurenz Rettig
Metastable phases present a promising route to expand the functionality of complex materials. Of particular interest are light-induced metastable phases that are inaccessible under equilibrium conditions, as they often host new, emergent properties switchable on ultrafast timescales. However, the processes governing the trajectories to such hidden phases remain largely unexplored. Here, using time-
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Patient-derived exosomes facilitate therapeutic targeting of oncogenic MET in advanced gastric cancer Sci. Adv. (IF 13.6) Pub Date : 2023-11-24 Sujin Hyung, Jihoon Ko, You Jeong Heo, Steven M. Blum, Seung Tae Kim, Se Hoon Park, Joon Oh Park, Won Ki Kang, Ho Yeong Lim, Samuel J. Klempner, Jeeyun Lee
Gastric cancer (GC) with peritoneal metastases and malignant ascites continues to have poor prognosis. Exosomes mediate intercellular communication during cancer progression and promote therapeutic resistance. Here, we report the significance of exosomes derived from malignant ascites (EXO Ascites ) in cancer progression and use modified exosomes as resources for cancer therapy. EXO Ascites from patients
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What makes a winner? Symbiont and host dynamics determine Caribbean octocoral resilience to bleaching Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Mary Alice Coffroth, Louis A. Buccella, Katherine M. Eaton, Howard R. Lasker, Alyssa T. Gooding, Harleena Franklin
Unlike reef-building, scleractinian corals, Caribbean soft corals (octocorals) have not suffered marked declines in abundance associated with anthropogenic ocean warming. Both octocorals and reef-building scleractinians depend on a nutritional symbiosis with single-celled algae living within their tissues. In both groups, increased ocean temperatures can induce symbiont loss (bleaching) and coral death
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Elastomeric vitrimers from designer polyhydroxyalkanoates with recyclability and biodegradability Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Robin M. Cywar, Chen Ling, Ryan W. Clarke, Dong Hyun Kim, Colin M. Kneucker, Davinia Salvachúa, Bennett Addison, Sarah A. Hesse, Christopher J. Takacs, Shu Xu, Meltem Urgun Demirtas, Sean P. Woodworth, Nicholas A. Rorrer, Christopher W. Johnson, Christopher J. Tassone, Robert D. Allen, Eugene Y.-X. Chen, Gregg T. Beckham
Cross-linked elastomers are stretchable materials that typically are not recyclable or biodegradable. Medium-chain-length polyhydroxyalkanoates (mcl-PHAs) are soft and ductile, making these bio-based polymers good candidates for biodegradable elastomers. Elasticity is commonly imparted by a cross-linked network structure, and covalent adaptable networks have emerged as a solution to prepare recyclable
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Charge-clustering induced fast ion conduction in 2LiX-GaF 3 : A strategy for electrolyte design Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Sawankumar V. Patel, Valentina Lacivita, Haoyu Liu, Erica Truong, Yongkang Jin, Eric Wang, Lincoln Miara, Ryounghee Kim, Hyeokjo Gwon, Rongfu Zhang, Ivan Hung, Zhehong Gan, Sung-Kyun Jung, Yan-Yan Hu
2LiX-GaF 3 (X = Cl, Br, I) electrolytes offer favorable features for solid-state batteries: mechanical pliability and high conductivities. However, understanding the origin of fast ion transport in 2LiX-GaF 3 has been challenging. The ionic conductivity order of 2LiCl-GaF 3 (3.20 mS/cm) > 2LiBr-GaF 3 (0.84 mS/cm) > 2LiI-GaF 3 (0.03 mS/cm) contradicts binary LiCl (10 −12 S/cm) < LiBr (10 −10 S/cm) <
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Similar but different: Characterization of dddD gene–mediated DMSP metabolism among coral-associated Endozoicomonas Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Yu-Jing Chiou, Ya-Fan Chan, Sheng-Ping Yu, Chih-Ying Lu, Silver Sung-Yun Hsiao, Pei-Wen Chiang, Ting-Chang Hsu, Po-Yu Liu, Naohisa Wada, Yu Lee, Wann-Neng Jane, Der-Chuen Lee, Yu-Wen Huang, Sen-Lin Tang
Endozoicomonas are often predominant bacteria and prominently important in coral health. Their role in dimethylsulfoniopropionate (DMSP) degradation has been a subject of discussion for over a decade. A previous study found that Endozoicomonas degraded DMSP through the dddD pathway. This process releases dimethyl sulfide, which is vital for corals coping with thermal stress. However, little is known
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Out-of-plane ferroelectricity and robust magnetoelectricity in quasi-two-dimensional materials Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Xue-Zeng Lu, Hui-Min Zhang, Ying Zhou, Tong Zhu, Hongjun Xiang, Shuai Dong, Hiroshi Kageyama, James M. Rondinelli
Thin-film ferroelectrics have been pursued for capacitive and nonvolatile memory devices. They rely on polarizations that are oriented in an out-of-plane direction to facilitate integration and addressability with complementary metal-oxide semiconductor architectures. The internal depolarization field, however, formed by surface charges can suppress the out-of-plane polarization in ultrathin ferroelectric
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Longitudinally variable 3D optical polarization structures Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Yan Li, Muhammad Afnan Ansari, Hammad Ahmed, Ruoxing Wang, Guanchao Wang, Xianzhong Chen
Generation and manipulation of three-dimensional (3D) optical polarization structures have received considerable interest because of their distinctive optical features and potential applications. However, the realization of multiple 3D polarization structures in a queue along the light propagation direction has not yet been reported. We propose and experimentally demonstrate a metalens to create longitudinally
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Therapeutic targeting of CPSF3-dependent transcriptional termination in ovarian cancer Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Peiye Shen, Kaiyan Ye, Huaijiang Xiang, Zhenfeng Zhang, Qinyang He, Xiao Zhang, Mei-Chun Cai, Junfei Chen, Yunheng Sun, Lifeng Lin, Chunting Qi, Meiying Zhang, Lydia W. T. Cheung, Tingyan Shi, Xia Yin, Ying Li, Wen Di, Rongyu Zang, Li Tan, Guanglei Zhuang
Transcriptional dysregulation is a recurring pathogenic hallmark and an emerging therapeutic vulnerability in ovarian cancer. Here, we demonstrated that ovarian cancer exhibited a unique dependency on the regulatory machinery of transcriptional termination, particularly, cleavage and polyadenylation specificity factor (CPSF) complex. Genetic abrogation of multiple CPSF subunits substantially hampered
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Algorithmic encoding of adaptive responses in temperature-sensing multimaterial architectures Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Weichen Li, Yue Wang, Tian Chen, Xiaojia Shelly Zhang
We envision programmable matters that can alter their physical properties in desirable manners based on user input or autonomous sensing. This vision motivates the pursuit of mechanical metamaterials that interact with the environment in a programmable fashion. However, this has not been systematically achieved for soft metamaterials because of the highly nonlinear deformation and underdevelopment
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Time-optimized protein NMR assignment with an integrative deep learning approach using AlphaFold and chemical shift prediction Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Piotr Klukowski, Roland Riek, Peter Güntert
Chemical shift assignment is vital for nuclear magnetic resonance (NMR)–based studies of protein structures, dynamics, and interactions, providing crucial atomic-level insight. However, obtaining chemical shift assignments is labor intensive and requires extensive measurement time. To address this limitation, we previously proposed ARTINA, a deep learning method for automatic assignment of two-dimensional
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The dahliagram: An interdisciplinary tool for investigation, visualization, and communication of past human-environmental interaction Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Michael Frachetti, Nicola Di Cosmo, Jan Esper, Lamya Khalidi, Franz Mauelshagen, Clive Oppenheimer, Eleonora Rohland, Ulf Büntgen
Investigation into the nexus of human-environmental behavior has seen increasing collaboration of archaeologists, historians, and paleo-scientists. However, many studies still lack interdisciplinarity and overlook incompatibilities in spatiotemporal scaling of environmental and societal data and their uncertainties. Here, we argue for a strengthened commitment to collaborative work and introduce the
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Halogen bonding–driven chiral amplification of a bimetallic gold-copper cluster through hierarchical assembly Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Ya-Jie Wang, Xiao-Yan Shi, Pengyao Xing, Xi-Yan Dong, Shuang-Quan Zang
Understanding the fundamentals and applications of chirality relies substantially on the amplification of chirality through hierarchical assemblies involving various weak interactions. However, a notable challenge remains for metal clusters chiral assembly driven by halogen bonding, despite their promising applications in lighting, catalysis, and biomedicine. Here, we used halogen bonding–driven assembly
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Longitudinal dynamics of the tumor hypoxia response: From enzyme activity to biological phenotype Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Sandy Che-Eun S. Lee, Andrea Hye An Pyo, Marianne Koritzinsky
Poor oxygenation (hypoxia) is a common spatially heterogeneous feature of human tumors. Biological responses to tumor hypoxia are orchestrated by the decreased activity of oxygen-dependent enzymes. The affinity of these enzymes for oxygen positions them along a continuum of oxygen sensing that defines their roles in launching reactive and adaptive cellular responses. These responses encompass regulation
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Augmenting L3MBTL2-induced condensates suppresses tumor growth in osteosarcoma Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Li Zhong, Jingxuan Wang, Wanqi Chen, Dongming Lv, Ruhua Zhang, Xin Wang, Cuiling Zeng, Xiaobo He, Lisi Zheng, Ying Gao, Shang Wang, Miao Li, Yuanzhong Wu, Junqiang Yin, Tiebang Kang, Dan Liao
Osteosarcoma is a highly aggressive cancer and lacks effective therapeutic targets. We found that L3MBTL2 acts as a tumor suppressor by transcriptionally repressing IFIT2 in osteosarcoma. L3MBTL2 recruits the components of Polycomb repressive complex 1.6 to form condensates via both Pho-binding pockets and polybasic regions within carboxyl-terminal intrinsically disordered regions; the L3MBTL2-induced
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Bright and sensitive red voltage indicators for imaging action potentials in brain slices and pancreatic islets Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Yi Han, Junqi Yang, Yuan Li, Yu Chen, Huixia Ren, Ran Ding, Weiran Qian, Keyuan Ren, Beichen Xie, Mengying Deng, Yinghan Xiao, Jun Chu, Peng Zou
Genetically encoded voltage indicators (GEVIs) allow the direct visualization of cellular membrane potential at the millisecond time scale. Among these, red-emitting GEVIs have been reported to support multichannel recordings and manipulation of cellular activities with reduced autofluorescence background. However, the limited sensitivity and dimness of existing red GEVIs have restricted their applications
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Rapidly determining the 3D structure of proteins by surface-enhanced Raman spectroscopy Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Hao Ma, Sen Yan, Xinyu Lu, Yi-Fan Bao, Jia Liu, Langxing Liao, Kun Dai, Maofeng Cao, Xiaojiao Zhao, Hao Yan, Hai-Long Wang, Xiaohui Peng, Ningyu Chen, Huishu Feng, Lilin Zhu, Guangbao Yao, Chunhai Fan, De-Yin Wu, Binju Wang, Xiang Wang, Bin Ren
Despite great advances in protein structure analysis, label-free and ultrasensitive methods to obtain the natural and dynamic three-dimensional (3D) structures are still urgently needed. Surface-enhanced Raman spectroscopy (SERS) can be a good candidate, whereas the complexity originated from the interactions between the protein and the gradient surface electric field makes it extremely challenging
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Disruption of the autism gene and chromatin regulator KDM5A alters hippocampal cell identity Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Lauretta El Hayek, Darlene DeVries, Ashlesha Gogate, Ariel Aiken, Kiran Kaur, Maria H. Chahrour
Chromatin regulation plays a pivotal role in establishing and maintaining cellular identity and is one of the top pathways disrupted in autism spectrum disorder (ASD). The hippocampus, composed of distinct cell types, is often affected in patients with ASD. However, the specific hippocampal cell types and their transcriptional programs that are dysregulated in ASD are unknown. Using single-nucleus
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Prenatal experience with language shapes the brain Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Benedetta Mariani, Giorgio Nicoletti, Giacomo Barzon, Maria Clemencia Ortiz Barajas, Mohinish Shukla, Ramón Guevara, Samir Simon Suweis, Judit Gervain
Human infants acquire language with notable ease compared to adults, but the neural basis of their remarkable brain plasticity for language remains little understood. Applying a scaling analysis of neural oscillations to address this question, we show that newborns’ electrophysiological activity exhibits increased long-range temporal correlations after stimulation with speech, particularly in the prenatally
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HILPS , a long noncoding RNA essential for global oxygen sensing in humans Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Zhi Chen, Chan Chen, Lei Xiao, Rongfu Tu, Miaomiao Yu, Donghai Wang, Wenqian Kang, Meng Han, Hao Huang, Hudan Liu, Bing Zhao, Guoliang Qing
Adaptation to low levels of oxygen (hypoxia) is a universal biological feature across metazoans. However, the unique mechanisms how different species sense oxygen deprivation remain unresolved. Here, we functionally characterize a novel long noncoding RNA (lncRNA), LOC105369301 , which we termed hypoxia-induced lncRNA for polo-like kinase 1 (PLK1) stabilization ( HILPS ). HILPS exhibits appreciable
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Macrophage activation drives ovarian failure and masculinization in zebrafish Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Paloma Bravo, Yulong Liu, Bruce W. Draper, Florence L. Marlow
BMP15 is a conserved regulator of ovarian development and maintenance in vertebrates. In humans, premature ovarian insufficiency is caused by autoimmunity and genetic factors, including mutation of BMP15. The cellular mechanisms underlying ovarian failure caused by BMP15 mutation and immune contributions are not understood. Using zebrafish, we established a causal link between macrophage activation
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ELOA3 : A primate-specific RNA polymerase II elongation factor encoded by a tandem repeat gene cluster Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Marc A. J. Morgan, Saeid Mohammad Parast, Marta Iwanaszko, Yuki Aoi, DongAhn Yoo, Zachary J. Dumar, Benjamin C. Howard, Kathryn A. Helmin, Qianli Liu, William R. Thakur, Jacob M. Zeidner, Benjamin D. Singer, Evan E. Eichler, Ali Shilatifard
The biological role of the repetitive DNA sequences in the human genome remains an outstanding question. Recent long-read human genome assemblies have allowed us to identify a function for one of these repetitive regions. We have uncovered a tandem array of conserved primate-specific retrogenes encoding the protein Elongin A3 (ELOA3), a homolog of the RNA polymerase II (RNAPII) elongation factor Elongin
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RGMa collapses the neuronal actin barrier against disease-implicated protein and exacerbates ALS Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Mikito Shimizu, Naoyuki Shiraishi, Satoru Tada, Tsutomu Sasaki, Goichi Beck, Seiichi Nagano, Makoto Kinoshita, Hisae Sumi, Tomoyuki Sugimoto, Yoko Ishida, Toru Koda, Teruyuki Ishikura, Yasuko Sugiyama, Keigo Kihara, Minami Kanakura, Tsuneo Nakajima, Shuko Takeda, Masanori P. Takahashi, Toshihide Yamashita, Tatsusada Okuno, Hideki Mochizuki
Repulsive guidance molecule A (RGMa) was originally identified as a neuronal growth cone–collapsing factor. Previous reports have demonstrated the multifunctional roles of RGMa mediated by neogenin1. However, the pathogenic involvement of RGMa in amyotrophic lateral sclerosis (ALS) remains unclear. Here, we demonstrated that RGMa concentration was elevated in the cerebrospinal fluid of both patients
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Time-resolving state-specific molecular dissociation with XUV broadband absorption spectroscopy Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Alexander Magunia, Marc Rebholz, Elisa Appi, Christina C. Papadopoulou, Hannes Lindenblatt, Florian Trost, Severin Meister, Thomas Ding, Michael Straub, Gergana D. Borisova, Junhee Lee, Rui Jin, Alexander von der Dellen, Christian Kaiser, Markus Braune, Stefan Düsterer, Skirmantas Ališauskas, Tino Lang, Christoph Heyl, Bastian Manschwetus, Sören Grunewald, Ulrike Frühling, Ayhan Tajalli, Ammar Bin
The electronic and nuclear dynamics inside molecules are essential for chemical reactions, where different pathways typically unfold on ultrafast timescales. Extreme ultraviolet (XUV) light pulses generated by free-electron lasers (FELs) allow atomic-site and electronic-state selectivity, triggering specific molecular dynamics while providing femtosecond resolution. Yet, time-resolved experiments are
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ATM deficiency confers specific therapeutic vulnerabilities in bladder cancer Sci. Adv. (IF 13.6) Pub Date : 2023-11-22 Yuzhen Zhou, Judit Börcsök, Elio Adib, Sophia C. Kamran, Alexander J. Neil, Konrad Stawiski, Dory Freeman, Dag Rune Stormoen, Zsofia Sztupinszki, Amruta Samant, Amin Nassar, Raie T. Bekele, Timothy Hanlon, Henkel Valentine, Ilana Epstein, Bijaya Sharma, Kristen Felt, Philip Abbosh, Chin-Lee Wu, Jason A. Efstathiou, David T. Miyamoto, William Anderson, Zoltan Szallasi, Kent W. Mouw
Ataxia-telangiectasia mutated (ATM) plays a central role in the cellular response to DNA damage and ATM alterations are common in several tumor types including bladder cancer. However, the specific impact of ATM alterations on therapy response in bladder cancer is uncertain. Here, we combine preclinical modeling and clinical analyses to comprehensively define the impact of ATM alterations on bladder
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Major shifts in biogeographic regions of freshwater fishes as evidence of the Anthropocene epoch Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Boris Leroy, Céline Bellard, Murilo S. Dias, Bernard Hugueny, Céline Jézéquel, Fabien Leprieur, Thierry Oberdorff, Marine Robuchon, Pablo A. Tedesco
Animals and plants worldwide are structured in global biogeographic regions, which were shaped by major geologic forces during Earth history. Recently, humans have changed the course of events by multiplying global pathways of introduction for nonindigenous species and propagating local species extirpations. Here, we report on how introductions and extirpations have changed the distributions of freshwater
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Alkylperoxy radicals are responsible for the formation of oxygenated primary organic aerosol Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Omar El Hajj, Samuel W. Hartness, Gregory W. Vandergrift, Yensil Park, Chase K. Glenn, Anita Anosike, Annabelle R. Webb, Nicholas S. Dewey, Anna C. Doner, Zezhen Cheng, Gurneesh S. Jatana, Melanie Moses-DeBusk, Swarup China, Brandon Rotavera, Rawad Saleh
Organic aerosol (OA) is an air pollutant ubiquitous in urban atmospheres. Urban OA is usually apportioned into primary OA (POA), mostly emitted by mobile sources, and secondary OA (SOA), which forms in the atmosphere due to oxidation of gas-phase precursors from anthropogenic and biogenic sources. By performing coordinated measurements in the particle phase and the gas phase, we show that the alkylperoxy
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Diverse mechanisms of taste coding in Drosophila Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Hany K. M. Dweck, John R. Carlson
Taste systems encode chemical cues that drive vital behaviors. We have elucidated noncanonical features of taste coding using an unconventional kind of electrophysiological analysis. We find that taste neurons of Drosophila are much more sensitive than previously thought. They have a low spontaneous firing frequency that depends on taste receptors. Taste neurons have a dual function as olfactory neurons:
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Anionic nanoplastic contaminants promote Parkinson’s disease–associated α-synuclein aggregation Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Zhiyong Liu, Arpine Sokratian, Addison M. Duda, Enquan Xu, Christina Stanhope, Amber Fu, Samuel Strader, Huizhong Li, Yuan Yuan, Benjamin G. Bobay, Joana Sipe, Ketty Bai, Iben Lundgaard, Na Liu, Belinda Hernandez, Catherine Bowes Rickman, Sara E. Miller, Andrew B. West
Recent studies have identified increasing levels of nanoplastic pollution in the environment. Here, we find that anionic nanoplastic contaminants potently precipitate the formation and propagation of α-synuclein protein fibrils through a high-affinity interaction with the amphipathic and non-amyloid component (NAC) domains in α-synuclein. Nanoplastics can internalize in neurons through clathrin-dependent
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Leukotriene A4 hydrolase inhibition improves age-related cognitive decline via modulation of synaptic function Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Julia M. Adams, Sanket V. Rege, Angela T. Liu, Ninh V. Vu, Sharda Raina, Douglas Y. Kirsher, Amy L. Nguyen, Reema Harish, Balazs Szoke, Dino P. Leone, Eva Czirr, Steven Braithwaite, Meghan Kerrisk Campbell
Leukotrienes, a class of inflammatory bioactive lipids, are well studied in the periphery, but less is known of their importance in the brain. We identified that the enzyme leukotriene A4 hydrolase (LTA4H) is expressed in healthy mouse neurons, and inhibition of LTA4H in aged mice improves hippocampal dependent memory. Single-cell nuclear RNA sequencing of hippocampal neurons after inhibition reveals
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Zona incerta dopamine neurons encode motivational vigor in food seeking Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Qiying Ye, Jeremiah Nunez, Xiaobing Zhang
Energy deprivation triggers food seeking to ensure homeostatic consumption, but the neural coding of motivational vigor in food seeking during physical hunger remains unknown. Here, we report that ablation of dopamine (DA) neurons in zona incerta (ZI) but not ventral tegmental area potently impaired food seeking after fasting. ZI DA neurons and their projections to paraventricular thalamus (PVT) were
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A ligand-independent Tie2-activating antibody reduces vascular leakage in models of Clarkson disease Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Ararat J. Ablooglu, Abhishek Desai, Jin-San Yoo, Cheon Ho Park, Eun-Ah Lee, Bu Yeon Kim, Hyunsun Park, Young Ae Lee, Sang Ryeol Shim, Weon Sup Lee, Kirk M. Druey
Vascular dysfunction resulting from endothelial hyperpermeability is a common and important feature of critical illness due to sepsis, trauma, and other conditions associated with acute systemic inflammation. Clarkson disease [monoclonal gammopathy-associated idiopathic systemic capillary leak syndrome (ISCLS)] is a rare, orphan disorder marked by spontaneous and recurrent episodes of hypotensive shock
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DOT1L is a barrier to histone acetylation during reprogramming to pluripotency Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Coral K. Wille, Xiaoya Zhang, Spencer A. Haws, John M. Denu, Rupa Sridharan
Embryonic stem cells (ESCs) have transcriptionally permissive chromatin enriched for gene activation–associated histone modifications. A striking exception is DOT1L-mediated H3K79 dimethylation (H3K79me2) that is considered a positive regulator of transcription. We find that ESCs are depleted for H3K79me2 at shared locations of enrichment with somatic cells, which are highly and ubiquitously expressed
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North Atlantic meltwater during Heinrich Stadial 1 drives wetter climate with more atmospheric rivers in western North America Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Jessica L. Oster, Sophia Macarewich, Marcus Lofverstrom, Cameron de Wet, Isabel Montañez, Juan M. Lora, Christopher Skinner, Clay Tabor
Atmospheric rivers (ARs) bring concentrated rainfall and flooding to the western United States (US) and are hypothesized to have supported sustained hydroclimatic changes in the past. However, their ephemeral nature makes it challenging to document ARs in climate models and estimate their contribution to hydroclimate changes recorded by time-averaged paleoclimate archives. We present new climate model
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The SMYD3-MAP3K2 signaling axis promotes tumor aggressiveness and metastasis in prostate cancer Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Sabeen Ikram, Apurv Rege, Maraki Y. Negesse, Alexandre G. Casanova, Nicolas Reynoird, Erin M. Green
Aberrant activation of Ras/Raf/mitogen-activated protein kinase (MAPK) signaling is frequently linked to metastatic prostate cancer (PCa); therefore, the characterization of modulators of this pathway is critical for defining therapeutic vulnerabilities for metastatic PCa. The lysine methyltransferase SET and MYND domain 3 (SMYD3) methylates MAPK kinase kinase 2 (MAP3K2) in some cancers, causing enhanced
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Attribution of individual methane and carbon dioxide emission sources using EMIT observations from space Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Andrew K. Thorpe, Robert O. Green, David R. Thompson, Philip G. Brodrick, John W. Chapman, Clayton D. Elder, Itziar Irakulis-Loitxate, Daniel H. Cusworth, Alana K. Ayasse, Riley M. Duren, Christian Frankenberg, Luis Guanter, John R. Worden, Philip E. Dennison, Dar A. Roberts, K. Dana Chadwick, Michael L. Eastwood, Jay E. Fahlen, Charles E. Miller
Carbon dioxide and methane emissions are the two primary anthropogenic climate-forcing agents and an important source of uncertainty in the global carbon budget. Uncertainties are further magnified when emissions occur at fine spatial scales (<1 km), making attribution challenging. We present the first observations from NASA’s Earth Surface Mineral Dust Source Investigation (EMIT) imaging spectrometer
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Increased palmitoylation improves estrogen receptor alpha–dependent hippocampal synaptic deficits in a mouse model of synucleinopathy Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Tim E. Moors, Shaomin Li, Thomas D. McCaffery, Gary P. H. Ho, Pascal A. Bechade, Luu N. Pham, Maria Ericsson, Silke Nuber
Parkinson’s disease (PD) is characterized by conversion of soluble α-synuclein (αS) into intraneuronal aggregates and degeneration of neurons and neuronal processes. Indications that women with early-stage PD display milder neurodegenerative features suggest that female sex partially protects against αS pathology. We previously reported that female sex and estradiol improved αS homeostasis and PD-like
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Digital quantum simulation of NMR experiments Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Kushal Seetharam, Debopriyo Biswas, Crystal Noel, Andrew Risinger, Daiwei Zhu, Or Katz, Sambuddha Chattopadhyay, Marko Cetina, Christopher Monroe, Eugene Demler, Dries Sels
Simulations of nuclear magnetic resonance (NMR) experiments can be an important tool for extracting information about molecular structure and optimizing experimental protocols but are often intractable on classical computers for large molecules such as proteins and for protocols such as zero-field NMR. We demonstrate the first quantum simulation of an NMR spectrum, computing the zero-field spectrum
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Geodynamically corrected Pliocene shoreline elevations in Australia consistent with midrange projections of Antarctic ice loss Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Fred D. Richards, Sophie L. Coulson, Mark J. Hoggard, Jacqueline Austermann, Blake Dyer, Jerry X. Mitrovica
The Mid-Pliocene represents the most recent interval in Earth history with climatic conditions similar to those expected in the coming decades. Mid-Pliocene sea level estimates therefore provide important constraints on projections of future ice sheet behavior and sea level change but differ by tens of meters due to local distortion of paleoshorelines caused by mantle dynamics. We combine an Australian
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Iron deficiency–induced ferritinophagy impairs skeletal muscle regeneration through RNF20-mediated H2Bub1 modification Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Yunshu Che, Jinteng Li, Peng Wang, Wenhui Yu, Jiajie Lin, Zepeng Su, Feng Ye, Zhaoqiang Zhang, Peitao Xu, Zhongyu Xie, Yanfeng Wu, Huiyong Shen
Iron deficiency (ID) is a widespread condition concomitant with disease and results in systemic dysfunction of target tissues including skeletal muscle. Activated by ID, ferritinophagy is a recently found type of selective autophagy, which plays an important role in various physiological and pathological conditions. In this study, we demonstrated that ID-mediated ferritinophagy impeded myogenic differentiation
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Higher global gross primary productivity under future climate with more advanced representations of photosynthesis Sci. Adv. (IF 13.6) Pub Date : 2023-11-17 Jürgen Knauer, Matthias Cuntz, Benjamin Smith, Josep G. Canadell, Belinda E. Medlyn, Alison C. Bennett, Silvia Caldararu, Vanessa Haverd
Gross primary productivity (GPP) is the key determinant of land carbon uptake, but its representation in terrestrial biosphere models (TBMs) does not reflect our latest physiological understanding. We implemented three empirically well supported but often omitted mechanisms into the TBM CABLE-POP: photosynthetic temperature acclimation, explicit mesophyll conductance, and photosynthetic optimization
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The internal structure of Eris inferred from its spin and orbit evolution Sci. Adv. (IF 13.6) Pub Date : 2023-11-15 Francis Nimmo, Michael E. Brown
The large Kuiper Belt object Eris is tidally locked to its small companion Dysnomia. Recently obtained bounds on the mass of Dysnomia demonstrate that Eris must be unexpectedly dissipative for it to have despun over the age of the solar system. Here, we show that Eris must have differentiated into an ice shell and rocky core to explain the dissipation. We further demonstrate that Eris’s ice shell must
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Sparking potential over 1200 V by a falling water droplet Sci. Adv. (IF 13.6) Pub Date : 2023-11-15 Luxian Li, Xuemei Li, Wei Deng, Chun Shen, Xinhai Chen, Han Sheng, Xiang Wang, Jianxin Zhou, Jidong Li, Yinlong Zhu, Zhuhua Zhang, Jun Yin, Wanlin Guo
Hydrovoltaic technology has achieved notable breakthroughs in electric output via using the moving boundary of electric double layer, but the output voltage induced by droplets is saturated around 350 volts, and the underlying mechanism remains to be further clarified. Here, we show that falling water droplets can stably spark an unprecedented voltage up to 1200 volts within microseconds that they
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Two-color coincidence single-molecule pulldown for the specific detection of disease-associated protein aggregates Sci. Adv. (IF 13.6) Pub Date : 2023-11-15 Rebecca S. Saleeb, Craig Leighton, Ji-Eun Lee, Judi O’Shaughnessy, Kiani Jeacock, Alexandre Chappard, Robyn Cumberland, Tianxiao Zhao, Sarah R. Ball, Margaret Sunde, David J. Clarke, Kristin Piché, Jacob A. McPhail, Ariel Louwrier, Rachel Angers, Sonia Gandhi, Patrick Downey, Tilo Kunath, Mathew H. Horrocks
Protein misfolding and aggregation is a characteristic of many neurodegenerative disorders, including Alzheimer’s and Parkinson’s disease. The oligomers generated during aggregation are likely involved in disease pathogenesis and present promising biomarker candidates. However, owing to their small size and low concentration, specific tools to quantify and characterize aggregates in complex biological
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A soft implantable energy supply system that integrates wireless charging and biodegradable Zn-ion hybrid supercapacitors Sci. Adv. (IF 13.6) Pub Date : 2023-11-15 Hongwei Sheng, Li Jiang, Qi Wang, Zongwen Zhang, Yurong Lv, Hongyun Ma, Huasheng Bi, Jiao Yuan, Mingjiao Shao, Fengfeng Li, Wenquan Li, Erqing Xie, Youdi Liu, Zhaoqian Xie, Jing Wang, Cunjiang Yu, Wei Lan
The advent of implantable bioelectronic devices offers prospective solutions toward health monitoring and disease diagnosis and treatments. However, advances in power modules have lagged far behind the tissue-integrated sensor nodes and circuit units. Here, we report a soft implantable power system that monolithically integrates wireless energy transmission and storage modules. The energy storage unit