The rise of SARS-CoV-2 variants with altered virus biology is bringing viral evolution into the public spotlight.

Competition can result in evolutionary changes to coexistence between competitors but there are no theoretical models that predict how the components of coexistence change during this eco-evolutionary process. Here we study the evolution of the coexistence components, niche overlap and competitive differences, in a two-species eco-evolutionary model based on consumer–resource interactions and quantitative

Little is known about the Pleistocene climatic context of northern Australia at the time of early human settlement. Here we generate a palaeoprecipitation proxy using stable carbon isotope analysis of modern and archaeological pandanus nutshell from Madjedbebe, Australia’s oldest known archaeological site. We document fluctuations in precipitation over the last 65,000 years and identify periods of

Biodiversity underpins the fundamental elements for human well-being including food security, human health and access to clean water. In 2010, the Aichi Targets were adopted by world leaders to address the crisis of biodiversity loss. Despite conservation efforts, none of the Aichi Targets have been fully met. However, comprehensive analysis of the reasons for failure in terms of implementation mechanisms

Human activity is an important driver of ecological and evolutionary change on our planet. In particular, domestication and biological introductions have important and long-lasting effects on species’ genomic architecture and diversity. However, genome-wide analysis of independent domestication and introduction events within a single species has not previously been performed. The Pacific kelp Undaria

The unabating rise in the number of species introduced outside of their native range makes predicting the spread of alien species an urgent challenge. Most predictions use models of the ecological niche of a species to identify suitable areas for invasion, but these predictions may have limited accuracy. Here, using the global alien avifauna, we demonstrate an alternative approach for predicting alien

The initiation and progression of cancers reflect the underlying process of somatic evolution, in which the diversification of heritable phenotypes provides a substrate for natural selection, resulting in the outgrowth of the most fit subpopulations. Although somatic evolution can tap into multiple sources of diversification, it is assumed to lack access to (para)sexual recombination—a key diversification

The underlying biological processes that govern many ecological systems can create very long periods of transient dynamics. It is often difficult or impossible to distinguish this transient behaviour from similar dynamics that would persist indefinitely. In some cases, a shift from the transient to the long-term, stable dynamics may occur in the absence of any exogenous forces. Recognizing the possibility

Finance will be among the priority concerns when the United Nations Convention on Biological Diversity launches the post-2020 framework for global biodiversity conservation (Global Biodiversity Framework) in 2021. The Biodiversity Finance Initiative provides a means for countries to account systematically for their biodiversity expenditures. A sample of 30 countries facilitated the construction of

Assessing extinction risk from climate drivers is a major goal of conservation science. Few studies, however, include a long-term perspective of climate change. Without explicit integration, such long-term temperature trends and their interactions with short-term climate change may be so dominant that they blur or even reverse the apparent direct relationship between climate change and extinction.

As our planet emerges into a new epoch in which humans dominate the Earth system, it is imperative that societies initiate a new phase of responsible environmental stewardship. Here we argue that information from the past has a valuable role to play in enhancing the sustainability and resilience of our societies. We highlight the ways that past data can be mobilized for a variety of efforts, from supporting

Mammalian brains feature exceptionally high levels of non-CpG DNA methylation alongside the canonical form of CpG methylation. Non-CpG methylation plays a critical regulatory role in cognitive function, which is mediated by the binding of MeCP2, the transcriptional regulator that when mutated causes Rett syndrome. However, it is unclear whether the non-CpG neural methylation system is restricted to

The quantity of UVA/deep violet light varies seasonally and affects locomotor activity in a marine annelid, providing cues for phenology in addition to those provided by change in photoperiod.

The right timing of animal physiology and behaviour ensures the stability of populations and ecosystems. To predict anthropogenic impacts on these timings, more insight is needed into the interplay between environment and molecular timing mechanisms. This is particularly true in marine environments. Using high-resolution, long-term daylight measurements from a habitat of the marine annelid Platynereis

Adaptive divergence is the key evolutionary process generating biodiversity by means of natural selection. Yet, the conditions under which it can arise in the presence of gene flow remain contentious. To address this question, we subjected 132 sexually reproducing fission yeast populations, sourced from two independent genetic backgrounds, to disruptive ecological selection and manipulated the level

Over the past decades, three major challenges to marine life have emerged as a consequence of anthropogenic emissions: ocean warming, acidification and oxygen loss. While most experimental research has targeted the first two stressors, the last remains comparatively neglected. Here, we implemented sequential hierarchical mixed-model meta-analyses (721 control–treatment comparisons) to compare the impacts

Most viruses can infect multiple hosts, yet the selective mechanisms that maintain multi-host generalists over single-host specialists remain an open question. Here we propagate populations of the newly identified bacteriophage øJB01 in coculture with many host genotypes and find that while phage can adapt to infect any of the new hosts, increasing the number of hosts slows the rate of adaptation.

Natural selection does not disappear with age, according to a new evolutionary demographic model. This conclusion is at odds with the widespread belief that ending reproduction relaxes purifying selection on alleles that increase our ageing body’s vulnerability to diseases such as cancer, Alzheimer’s or diabetes.

Assessing the role played by purifying selection on a susceptibility allele to late-onset disease (SALOD) is crucial to understanding the puzzling allelic spectrum of a disease, because most alleles are recent and rare. This fact is surprising because it suggests that alleles are under purifying selection while those that are involved in post-menopause mortality are often considered neutral in the

Resource competition and metabolic cross-feeding are among the main drivers of microbial community assembly. Yet the degree to which these two conflicting forces are reflected in the composition of natural communities has not been systematically investigated. Here, we use genome-scale metabolic modelling to assess the potential for resource competition and metabolic cooperation in large co-occurring

Technology is transforming societies worldwide. A major innovation is the emergence of robotics and autonomous systems (RAS), which have the potential to revolutionize cities for both people and nature. Nonetheless, the opportunities and challenges associated with RAS for urban ecosystems have yet to be considered systematically. Here, we report the findings of an online horizon scan involving 170

The possibility of using the elemental compositions of species as a tool to identify species/genotype niche remains to be tested at a global scale. We investigated relationships between the foliar elemental compositions (elementomes) of trees at a global scale with phylogeny, climate, N deposition and soil traits. We analysed foliar N, P, K, Ca, Mg and S concentrations in 23,962 trees of 227 species

A potential breakthrough in our ability to predict protein structure from sequence could have a major impact on evolutionary biology.

Climate warming has caused the seasonal timing of many components of ecological food chains to advance. In the context of trophic interactions, the match–mismatch hypothesis postulates that differential shifts can lead to phenological asynchrony with negative impacts for consumers. However, at present there has been no consistent analysis of the links between temperature change, phenological asynchrony

During the Anthropocene and other eras of rapidly changing climates, rates of change of ecological systems can be described as fast, slow or abrupt. Fast ecological responses closely track climate change, slow responses substantively lag climate forcing, causing disequilibria and reduced fitness, and abrupt responses are characterized by nonlinear, threshold-type responses at rates that are large relative

Two analyses of developmental patterning functions of leg and wing genes in a crustacean provide complementary support for the incorporation of proximal leg components into the body wall during the crustacean–insect transition, but lead to duelling models for which portion(s) re-emerged from the body as wings.

The origin of insect wings has long been debated. Central to this debate is whether wings are a novel structure on the body wall resulting from gene co-option, or evolved from an exite (outgrowth; for example, a gill) on the leg of an ancestral crustacean. Here, we report the phenotypes for the knockout of five leg patterning genes in the crustacean Parhyale hawaiensis and compare these with their

Parallelism, the evolution of similar traits in populations diversifying in similar conditions, provides strong evidence of adaptation by natural selection. Many studies of parallelism focus on comparisons of different ecotypes or contrasting environments, defined a priori, which could upwardly bias the apparent prevalence of parallelism. Here, we estimated genomic parallelism associated with components

We welcome the move to virtual being the default for scientific interactions.

A Correction to this paper has been published: https://doi.org/10.1038/s41559-020-01327-6.

The United Nations Decade of Ocean Science for Sustainable Development presents an exceptional opportunity to effect positive change in ocean use. We outline what is required of the deep-sea research community to achieve these ambitious objectives.

The absence of unambiguous animal body fossils in rocks older than the late Ediacaran has rendered fossil lipids the most promising tracers of early organismic complexity. Yet much debate surrounds the various potential biological sources of putative metazoan steroids found in Precambrian rocks. Here we show that 26-methylated steranes—hydrocarbon structures currently attributed to the earliest animals—can

The earliest fossils of animal-like organisms occur in Ediacaran rocks that are approximately 571 million years old. Yet 24-isopropylcholestanes and other C30 fossil sterol molecules have been suggested to reflect an important ecological role of demosponges as the first abundant animals by the end of the Cryogenian period (>635 million years ago). Here, we demonstrate that C30 24-isopropylcholestane

Changes in gene expression play a fundamental role in phenotypic evolution. Transcriptome evolutionary dynamics have so far mainly been compared among distantly related species and remain largely unexplored during rapid organismal diversification, in which gene regulatory changes have been suggested as particularly effective drivers of phenotypic divergence. Here we studied gene expression evolution

The causes and consequences of genome reduction in animals are unclear because our understanding of this process mostly relies on lineages with often exceptionally high rates of evolution. Here, we decode the compact 73.8-megabase genome of Dimorphilus gyrociliatus, a meiobenthic segmented worm. The D. gyrociliatus genome retains traits classically associated with larger and slower-evolving genomes

Resource allocation within trees is a zero-sum game. Unavoidable trade-offs dictate that allocation to growth-promoting functions curtails other functions, generating a gradient of investment in growth versus survival along which tree species align, known as the interspecific growth–mortality trade-off. This paradigm is widely accepted but not well established. Using demographic data for 1,111 tree

The study of environmental DNA can reveal information about the history and presence of Indigenous communities on their lands — potentially even inadvertently. Better engagement with the ethical aspects of environmental DNA research is required in the field as a whole, and especially for researchers working on Indigenous lands.

Cranial variation in South African specimens of Paranthropus robustus illustrate temporal changes that suggest how the morphology of this hominin fossil species related to its palaeoenvironment and microevolutionary processes.

Stretching and bending vibrations of water molecules absorb photons of specific wavelengths, a phenomenon that constrains light energy available for aquatic photosynthesis. Previous work suggested that these absorption properties of water create a series of spectral niches but the theory was still too simplified to enable prediction of the spectral niches in real aquatic ecosystems. Here, we show with

Paranthropus robustus is a small-brained extinct hominin from South Africa characterized by derived, robust craniodental morphology. The most complete known skull of this species is DNH 7 from Drimolen Main Quarry, which differs from P. robustus specimens recovered elsewhere in ways attributed to sexual dimorphism. Here, we describe a new fossil specimen from Drimolen Main Quarry, dated from approximately

The metabotropic gamma-aminobutyric acid B receptor (GABABR) is a G protein-coupled receptor that mediates neuronal inhibition by the neurotransmitter GABA. While GABABR-mediated signalling has been suggested to play central roles in neuronal differentiation and proliferation across evolution, it has mostly been studied in the mammalian brain. Here, we demonstrate that ectopic activation of GABABR

Host life history and demography play important roles in host–pathogen dynamics, by influencing the ability of hosts and their pathogens to coexist. We introduce the concept of demographic competence to describe the ability of host populations to sustain endemic infectious disease. Hosts with high demographic competence are more likely to act as keystone hosts and constitute reservoirs of infection

The widespread presence of same-sex sexual behaviour (SSB) has long been thought to pose an evolutionary conundrum, as participants in SSB suffer the cost of failing to reproduce after expending the time and energy to find a mate. The potential for SSB to occur as part of an optimal strategy has received less attention, although indiscriminate sexual behaviour may be the ancestral mode of sexual reproduction

In African wildlife conservation literature, southern and southeastern African voices dominate, giving a false impression of pan-Africanism. We present divergent perspectives from West, Central and the Horn of Africa and argue that empathy towards multiple perspectives offers increased resilience to COVID-19 and other crises.

Natural light cycles are being eroded over large areas of the globe by the direct emissions and sky brightening that result from sources of artificial night-time light. This is predicted to affect wild organisms, particularly because of the central role that light regimes play in determining the timing of biological activity. Although many empirical studies have reported such effects, these have focused

When sociality evolved and in which groups remain open questions in mammalian evolution, largely due to the fragmentary Mesozoic mammal fossil record. Nevertheless, exceptionally preserved fossils collected in well-constrained geologic and spatial frameworks can provide glimpses into these more fleeting aspects of early mammalian behaviour. Here we report on exceptional specimens of a multituberculate

The greater bioavailability of nitrogen (N), phosphorus (P) and potassium (K) in the Anthropocene has strongly impacted terrestrial plant communities. In northwest Europe, because high N deposition is considered the main driver of plant diversity loss, European Union (EU) legislation to reduce N deposition is expected to promote plant species recovery. However, this expectation is simplistic: it ignores

Quantifying how biodiversity affects ecosystem functions through time over large spatial extents is needed for meeting global biodiversity goals yet is infeasible with field-based approaches alone. Imaging spectroscopy is a tool with potential to help address this challenge. Here, we demonstrate a spectral approach to assess biodiversity effects in young forests that provides insight into its underlying

A wealth of potential exists for citizen science to contribute to major ecological and societal challenges. We can all play a part by contributing to these projects, and encouraging our networks to do so too.

Global synchrony in tree growth shows a recent rapid rise tied to increasing temperature synchrony, which might alter global carbon sink dynamics.

Changes in the temporal coherence between populations, which can influence their stability, resilience and persistence, remain a critical uncertainty of climate change. Recent studies have documented increasing spatial synchrony between populations at continental scales and linked it to anthropogenic climate change. However, the lack of long-term and global baseline perspectives on spatial synchrony

Eukaryogenesis is one of the most enigmatic evolutionary transitions, during which simple prokaryotic cells gave rise to complex eukaryotic cells. While evolutionary intermediates are lacking, gene duplications provide information on the order of events by which eukaryotes originated. Here we use a phylogenomics approach to reconstruct successive steps during eukaryogenesis. We find that gene duplications

During crop domestication, human farmers traded greater productivity for higher crop vulnerability outside specialized cultivation conditions. We found a similar domestication trade-off across the major co-evolutionary transitions in the farming systems of attine ants. First, the fundamental nutritional niches of cultivars narrowed over ~60 million years of naturally selected domestication, and laboratory

Several theories predict that rates of phenotypic evolution should be related to the rate at which new lineages arise. However, drawing general conclusions regarding the coupling between these fundamental evolutionary rates has been difficult due to the inconsistent nature of previous results combined with uncertainty over the most appropriate methodology with which to investigate such relationships

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

The transition between cell envelopes with one membrane (Gram-positive or monoderm) and those with two membranes (Gram-negative or diderm) is a fundamental open question in the evolution of Bacteria. Evidence of the presence of two independent diderm lineages, the Halanaerobiales and the Negativicutes, within the classically monoderm Firmicutes has blurred the monoderm/diderm divide and specifically

As a heritable sequence-specific adaptive immune system, CRISPR–Cas is a powerful force shaping strain diversity in host–virus systems. While the diversity of CRISPR alleles has been explored, the associated structure and dynamics of host–virus interactions have not. We explore the role of CRISPR in mediating the interplay between host–virus interaction structure and eco-evolutionary dynamics in a

Monoculture plantations have been promoted for the restoration of the world’s forested area, but these have not contained or reversed the loss of biodiversity. More innovative incentive policies should be implemented to shift the planet’s forest restoration policies from increasing the area of forests per se to improving their biodiversity.

As a result of identity prejudice, certain individuals are more vulnerable to conflict and violence when they are in the field. It is paramount that all fieldworkers be informed of the risks some colleagues may face, so that they can define best practice together: here we recommend strategies to minimize risk for all individuals conducting fieldwork.