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Unveiling the polarity of actin filaments by cryo-electron tomography Structure (IF 4.862) Pub Date : 2021-01-20 Bruno Martins; Simona Sorrentino; Wen-Lu Chung; Meltem Tatli; Ohad Medalia; Matthias Eibauer
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Structures of FHOD1-Nesprin1/2 complexes reveal alternate binding modes for the FH3 domain of formins Structure (IF 4.862) Pub Date : 2021-01-19 Sing Mei Lim; Victor E. Cruz; Susumu Antoku; Gregg G. Gundersen; Thomas U. Schwartz
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Cryo-EM structure of the EspA filament from enteropathogenic Escherichia coli: revealing the mechanism of effector translocation in the T3SS Structure (IF 4.862) Pub Date : 2021-01-15 Bronwyn J.E. Lyons; Claire E. Atkinson; Wanyin Deng; Antonio Serapio-Palacios; B. Brett Finlay; Natalie C.J. Strynadka
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Cryo-EM structure of K+-bound hERG channel complexed with the blocker astemizole Structure (IF 4.862) Pub Date : 2021-01-14 Tatsuki Asai; Naruhiko Adachi; Toshio Moriya; Hideyuki Oki; Takamitsu Maru; Masato Kawasaki; Kano Suzuki; Sisi Chen; Ryohei Ishii; Kazuko Yonemori; Shigeru Igaki; Satoshi Yasuda; Satoshi Ogasawara; Toshiya Senda; Takeshi Murata
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Using cryo-EM to understand antimycobacterial resistance in the catalase-peroxidase (KatG) from Mycobacterium tuberculosis Structure (IF 4.862) Pub Date : 2021-01-13 Asma Munir; Michael T. Wilson; Steven W. Hardwick; Dimitri Y. Chirgadze; Jonathan A.R. Worrall; Tom L. Blundell; Amanda K. Chaplin
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Breaking the Rules: Protein Sculpting in NEIL2 Regulation Structure (IF 4.862) Pub Date : 2021-01-07 Susan E. Tsutakawa; Altaf H. Sarker
The canonical DNA glycosylase role is global base damage repair but includes functions in epigenetic gene regulation, immune response modulation, replication, and transcription. In this issue of Structure, Eckenroth et al. (2020) present the NEIL2 glycosylase structure. Its catalytic domain flexibility differentiates it from most other glycosylases and suggests novel regulatory mechanisms.
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Cellular Traffic Jam and Disease Due to Mutations in SRP54 Structure (IF 4.862) Pub Date : 2021-01-07 Oliver Weichenrieder
In this issue of Structure, Juaire et al. use X-ray crystallography, biophysical tools, and cell-based assays to investigate disease-associated variants of the SRP54 GTPase and to demonstrate that defects in SRP-mediated protein secretion can explain phenotypes of severe neutropenia with Shwachman-Diamond-syndrome-like symptoms.
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Functional and Regulatory Roles of Fold-Switching Proteins Structure (IF 4.862) Pub Date : 2020-11-10 Allen K. Kim; Lauren L. Porter
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The active DNA-PK holoenzyme occupies a tensed state in a staggered synaptic complex Structure (IF 4.862) Pub Date : 2021-01-06 Morgan Hepburn; Daniel J. Saltzberg; Linda Lee; Shujuan Fang; Claire Atkinson; Natalie C.J. Strynadka; Andrej Sali; Susan P. Lees-Miller; David C. Schriemer
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A comprehensive binding study illustrates ligand recognition in the periplasmic binding protein PotF Structure (IF 4.862) Pub Date : 2021-01-05 Pascal Kröger; Sooruban Shanmugaratnam; Noelia Ferruz; Kristian Schweimer; Birte Höcker
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Structural and functional characterization of the N-terminal acetyltransferase Naa50 Structure (IF 4.862) Pub Date : 2021-01-04 Jonas Weidenhausen; Jürgen Kopp; Laura Armbruster; Markus Wirtz; Karine Lapouge; Irmgard Sinning
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Structure and immune recognition of the porcine epidemic diarrhea virus spike protein Structure (IF 4.862) Pub Date : 2020-12-29 Robert N. Kirchdoerfer; Mahesh Bhandari; Olnita Martini; Leigh M. Sewall; Sandhya Bangaru; Kyoung-Jin Yoon; Andrew B. Ward
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Structural analysis of Mycobacterium tuberculosis M13 metalloprotease Zmp1 open states Structure (IF 4.862) Pub Date : 2020-12-29 Wenguang G. Liang; Jordan M. Mancl; Minglei Zhao; Wei-Jen Tang
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Allosteric HIV integrase inhibitors promote formation of inactive branched polymers via homomeric carboxy-terminal domain interactions Structure (IF 4.862) Pub Date : 2020-12-23 Kushol Gupta; Audrey Allen; Carolina Giraldo; Grant Eilers; Robert Sharp; Young Hwang; Hemma Murali; Katrina Cruz; Paul Janmey; Frederic Bushman; Gregory D. Van Duyne
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A Structural Guide to the Bloom Syndrome Complex Structure (IF 4.862) Pub Date : 2020-12-22 Rohan Bythell-Douglas; Andrew J. Deans
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Clamping, bending, and twisting inter-domain motions in the misfold-recognizing portion of UDP-glucose:glycoprotein glucosyltransferase Structure (IF 4.862) Pub Date : 2020-12-21 Carlos P. Modenutti; Juan I. Blanco Capurro; Roberta Ibba; Dominic S. Alonzi; Mauro N. Song; Snežana Vasiljević; Abhinav Kumar; Anu V. Chandran; Gabor Tax; Lucia Marti; Johan C. Hill; Andrea Lia; Mario Hensen; Thomas Waksman; Jonathan Rushton; Simone Rubichi; Angelo Santino; Marcelo A. Martí; Pietro Roversi
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CryoEM map of Pseudomonas aeruginosa PilQ enables structural characterization of TsaP Structure (IF 4.862) Pub Date : 2020-12-17 Matthew McCallum; Stephanie Tammam; John L. Rubinstein; Lori L. Burrows; P. Lynne Howell
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Motif orientation matters: structural characterization of TEAD1 recognition of genomic DNA Structure (IF 4.862) Pub Date : 2020-12-16 Růžena Filandrová; Karel Vališ; Jiří Černý; Josef Chmelík; Lukáš Slavata; Jan Fiala; Michal Rosůlek; Daniel Kavan; Petr Man; Tomáš Chum; Marek Cebecauer; Daniele Fabris; Petr Novák
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Calmodulin binds to Drosophila TRP with an unexpected mode Structure (IF 4.862) Pub Date : 2020-12-15 Weidi Chen; Zeyu Shen; Sabrina Asteriti; Zijing Chen; Fei Ye; Ziling Sun; Jun Wan; Craig Montell; Roger C. Hardie; Wei Liu; Mingjie Zhang
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Transient association between proteins elicits alteration of dynamics at sites far away from interfaces Structure (IF 4.862) Pub Date : 2020-12-10 Himani Tandon; Alexandre G. de Brevern; Narayanaswamy Srinivasan
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Reprogramming the Specificity of a Protein Interface by Computational and Data-Driven Design Structure (IF 4.862) Pub Date : 2020-12-08 Regina Hertle; Julian Nazet; Florian Semmelmann; Sandra Schlee; Franziska Funke; Rainer Merkl; Reinhard Sterner
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A Conformational Change in the N Terminus of SLC38A9 Signals mTORC1 Activation Structure (IF 4.862) Pub Date : 2020-12-08 Hsiang-Ting Lei; Xuelang Mu; Johan Hattne; Tamir Gonen
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Phosphorylation of RIAM by Src Promotes Integrin Activation by Unmasking the PH Domain of RIAM Structure (IF 4.862) Pub Date : 2020-12-03 Eun-Ah Cho; Pingfeng Zhang; Vikas Kumar; Mikhail Kavalchuk; Hao Zhang; Qingqiu Huang; James S. Duncan; Jinhua Wu
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Allosteric Interference in Oncogenic FLI1 and ERG Transactions by Mithramycins Structure (IF 4.862) Pub Date : 2020-12-03 Caixia Hou; Abhisek Mandal; Jürgen Rohr; Oleg V. Tsodikov
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Single-Molecule Approved Surface Passivation Structure (IF 4.862) Pub Date : 2020-12-01 Andrés Manuel Vera; Philip Tinnefeld
Single-molecule experiments reveal structure function relationships and biomolecular dynamics in physiologically relevant conditions. In this issue of Structure, Park et al. (2020) report an optimized surface passivation strategy with polyethylene glycol in a dense, contracted conformation. Assembly of a functional transcription pre-initiation complex is demonstrated.
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Vaccinia Virus Immunomodulator A46: Destructive Interactions with MAL and MyD88 Shown by Negative-Stain Electron Microscopy Structure (IF 4.862) Pub Date : 2020-10-08 Daniel F. Azar; Meryl Haas; Sofiya Fedosyuk; Md. Habibur Rahaman; Andrew Hedger; Bostjan Kobe; Tim Skern
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Malleability of the SARS-CoV-2 3CL Mpro Active-Site Cavity Facilitates Binding of Clinical Antivirals Structure (IF 4.862) Pub Date : 2020-10-23 Daniel W. Kneller; Stephanie Galanie; Gwyndalyn Phillips; Hugh M. O'Neill; Leighton Coates; Andrey Kovalevsky
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Programmed Trade-offs in Protein Folding Networks Structure (IF 4.862) Pub Date : 2020-10-13 Sebastian Pechmann
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Cryo-EM Structure of CtBP2 Confirms Tetrameric Architecture Structure (IF 4.862) Pub Date : 2020-12-01 Anne M. Jecrois; M. Michael Dcona; Xiaoyan Deng; Dipankar Bandyopadhyay; Steven R. Grossman; Celia A. Schiffer; William E. Royer
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Assessing the Structures and Interactions of γD-Crystallin Deamidation Variants Structure (IF 4.862) Pub Date : 2020-12-01 Alex J. Guseman; Matthew J. Whitley; Jeremy J. González; Nityam Rathi; Mikayla Ambarian; Angela M. Gronenborn
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Cryo-EM Structure of the Prostaglandin E Receptor EP4 Coupled to G Protein Structure (IF 4.862) Pub Date : 2020-12-01 Shingo Nojima; Yoko Fujita; Kanako Terakado Kimura; Norimichi Nomura; Ryoji Suno; Kazushi Morimoto; Masaki Yamamoto; Takeshi Noda; So Iwata; Hideki Shigematsu; Takuya Kobayashi
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Dimeric Structure of the Pseudokinase IRAK3 Suggests an Allosteric Mechanism for Negative Regulation Structure (IF 4.862) Pub Date : 2020-11-24 Sven M. Lange; Marina I. Nelen; Philip Cohen; Yogesh Kulathu
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Structure of the Extracellular Region of the Bacterial Type VIIb Secretion System Subunit EsaA Structure (IF 4.862) Pub Date : 2020-11-24 Timothy A. Klein; Dirk W. Grebenc; Shil Y. Gandhi; Vraj S. Shah; Youngchang Kim; John C. Whitney
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A2A Adenosine Receptor Partial Agonism Related to Structural Rearrangements in an Activation Microswitch Structure (IF 4.862) Pub Date : 2020-11-24 Matthew T. Eddy; Bryan T. Martin; Kurt Wüthrich
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Structural Basis of CYRI-B Direct Competition with Scar/WAVE Complex for Rac1 Structure (IF 4.862) Pub Date : 2020-11-19 Tamas Yelland; Anh Hoang Le; Savvas Nikolaou; Robert Insall; Laura Machesky; Shehab Ismail
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Native Mass Spectrometry-Based Screening for Optimal Sample Preparation in Single-Particle Cryo-EM Structure (IF 4.862) Pub Date : 2020-11-19 Paul Dominic B. Olinares; Jin Young Kang; Eliza Llewellyn; Courtney Chiu; James Chen; Brandon Malone; Ruth M. Saecker; Elizabeth A. Campbell; Seth A. Darst; Brian T. Chait
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Maintaining Context in Ice: Cryo-EM/ET Workflow Optimizations Structure (IF 4.862) Pub Date : 2020-11-03 Nadav Elad; Sharon Grayer Wolf
In this issue of Structure, breakthroughs in cryo-EM/ET research are presented. Klebl et al. (2020) demonstrate how speed in sample vitrification impacts the quality of macromolecular particles in resultant cryo-EM grids. Wu et al. (2020) combine fluorescence, ion beam milling, and tomography to unravel unique features in vitrified yeast cells.
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Marveling at the Incredible ULK4 Structure (IF 4.862) Pub Date : 2020-11-03 Patrick A. Eyers
Unc-51-like kinase 4 (ULK4) is a pseudokinase conserved in most eukaryotes, yet ULK4 signaling mechanisms remain enigmatic. In this issue of Structure, Preuss and colleagues report a structure of the ATP-bound ULK4 pseudokinase domain, supported by proteomic analysis of the ULK4 interactome and in-depth evolutionary analysis of the intriguingULK4 pseudokinase domain.
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The Architecture of Inactivated SARS-CoV-2 with Postfusion Spikes Revealed by Cryo-EM and Cryo-ET Structure (IF 4.862) Pub Date : 2020-10-15 Chuang Liu; Luiza Mendonça; Yang Yang; Yuanzhu Gao; Chenguang Shen; Jiwei Liu; Tao Ni; Bin Ju; Congcong Liu; Xian Tang; Jinli Wei; Xiaomin Ma; Yanan Zhu; Weilong Liu; Shuman Xu; Yingxia Liu; Jing Yuan; Jing Wu; Peijun Zhang
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A Global Ramachandran Score Identifies Protein Structures with Unlikely Stereochemistry. Structure (IF 4.862) Pub Date : 2020-08-27 Oleg V Sobolev,Pavel V Afonine,Nigel W Moriarty,Maarten L Hekkelman,Robbie P Joosten,Anastassis Perrakis,Paul D Adams
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Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry Structure (IF 4.862) Pub Date : 2020-10-15 Alexander Leitner; Alexandre M.J.J. Bonvin; Christoph H. Borchers; Robert J. Chalkley; Julia Chamot-Rooke; Colin W. Combe; Jürgen Cox; Meng-Qiu Dong; Lutz Fischer; Michael Götze; Fabio C. Gozzo; Albert J.R. Heck; Michael R. Hoopmann; Lan Huang; Yasushi Ishihama; Andrew R. Jones; Nir Kalisman; Oliver Kohlbacher; Juri Rappsilber
Cross-linking mass spectrometry (MS) has substantially matured as a method over the past 2 decades through parallel development in multiple labs, demonstrating its applicability to protein structure determination, conformation analysis, and mapping protein interactions in complex mixtures. Cross-linking MS has become a much-appreciated and routinely applied tool, especially in structural biology. Therefore
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Structural Basis for Toxin Inhibition in the VapXD Toxin-Antitoxin System Structure (IF 4.862) Pub Date : 2020-10-22 Marie B. Bertelsen; Meriem Senissar; Maja H. Nielsen; Francesco Bisiak; Marta V. Cunha; Ashley L. Molinaro; Dayle A. Daines; Ditlev E. Brodersen
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Serial cryoFIB/SEM Reveals Cytoarchitectural Disruptions in Leigh Syndrome Patient Cells Structure (IF 4.862) Pub Date : 2020-10-22 Yanan Zhu; Dapeng Sun; Andreas Schertel; Jiying Ning; Xiaofeng Fu; Pam Pam Gwo; Alan M. Watson; Laura C. Zanetti-Domingues; Marisa L. Martin-Fernandez; Zachary Freyberg; Peijun Zhang
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Amphipathic Motifs Regulate N-BAR Protein Endophilin B1 Auto-inhibition and Drive Membrane Remodeling Structure (IF 4.862) Pub Date : 2020-10-20 Veer S. Bhatt; Robert Ashley; Anna Sundborger-Lunna
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Capturing the Conformational Ensemble of the Mixed Folded Polyglutamine Protein Ataxin-3 Structure (IF 4.862) Pub Date : 2020-10-15 Alessandro Sicorello; Bartosz Różycki; Petr V. Konarev; Dmitri I. Svergun; Annalisa Pastore
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High-Resolution Cryo-EM Structure of the Cardiac Actomyosin Complex Structure (IF 4.862) Pub Date : 2020-10-15 Cristina Risi; Luisa U. Schäfer; Betty Belknap; Ian Pepper; Howard D. White; Gunnar F. Schröder; Vitold E. Galkin
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Structural and Functional Impact of SRP54 Mutations Causing Severe Congenital Neutropenia Structure (IF 4.862) Pub Date : 2020-10-13 Keven D. Juaire; Karine Lapouge; Matthias M.M. Becker; Irina Kotova; Michelle Michelhans; Raphael Carapito; Klemens Wild; Seiamak Bahram; Irmgard Sinning
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A Designer Quest for the Achilles’ Heel of Influenza Structure (IF 4.862) Pub Date : 2020-10-06 J. Eduardo Fajardo; Andras Fiser
Monoclonal antibodies are attractive but, in certain applications, limited therapeutic modalities due to their large size and high specificity. In this issue of Structure, Sevy at al. describe a computationally designed cyclic peptide mimicking the CDRH3 loop of the C05 antibody against influenza showing the potential utility of designer biologics.
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Structures from the Mesophase: MicroED Targets Crystals Extracted from LCP Structure (IF 4.862) Pub Date : 2020-10-06 Marcus Gallagher-Jones; Jose A. Rodriguez
The determination of protein structures from nanocrystals grown in lipidic cubic phase (LCP) is a promising crystallographic approach. In this issue of Structure, Zhu et al. (2020) extract crystals from the dense matrix of monoolein LCP for interrogation by micro electron diffraction (MicroED) and yield a 2 Å structure of Proteinase K.
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Structure of the 70S Ribosome from the Human Pathogen Acinetobacter baumannii in Complex with Clinically Relevant Antibiotics. Structure (IF 4.862) Pub Date : 2020-08-27 David Nicholson,Thomas A Edwards,Alex J O'Neill,Neil A Ranson
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Identification of Structurally Related Antibodies in Antibody Sequence Databases Using Rosetta-Derived Position-Specific Scoring. Structure (IF 4.862) Pub Date : 2020-08-11 Jessica A Finn,Jinhui Dong,Alexander M Sevy,Erica Parrish,Iuliia Gilchuk,Rachel Nargi,Morgan Scarlett-Jones,Walter Reichard,Robin Bombardi,Thomas G Voss,Jens Meiler,James E Crowe
The amount of antibody (Ab) variable gene sequence information is expanding rapidly, but our ability to predict the function of Abs from sequence alone is limited. Here, we describe a sequence-to-function prediction method that couples structural data for a single Ab/antigen (Ag) complex with repertoire data. We used a position-specific structure-scoring matrix (P3SM) incorporating structure-prediction
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The Binding of Palonosetron and Other Antiemetic Drugs to the Serotonin 5-HT3 Receptor. Structure (IF 4.862) Pub Date : 2020-07-28 Eleftherios Zarkadas,Hong Zhang,Wensheng Cai,Gregory Effantin,Jonathan Perot,Jacques Neyton,Christophe Chipot,Guy Schoehn,Francois Dehez,Hugues Nury
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Structure Determination from Lipidic Cubic Phase Embedded Microcrystals by MicroED. Structure (IF 4.862) Pub Date : 2020-07-30 Lan Zhu,Guanhong Bu,Liang Jing,Dan Shi,Ming-Yue Lee,Tamir Gonen,Wei Liu,Brent L Nannenga
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Tightening the Crosslinking Distance Restraints for Better Resolution of Protein Structure and Dynamics. Structure (IF 4.862) Pub Date : 2020-08-06 Zhou Gong,Shang-Xiang Ye,Chun Tang
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D-Serine Potently Drives Ligand-Binding Domain Closure in the Ionotropic Glutamate Receptor GluD2. Structure (IF 4.862) Pub Date : 2020-07-30 Alfred C Chin,Remy A Yovanno,Tyler J Wied,Ariel Gershman,Albert Y Lau
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Structure of the Arabidopsis Glutamate Receptor-like Channel GLR3.2 Ligand-Binding Domain Structure (IF 4.862) Pub Date : 2020-10-06 Shanti Pal Gangwar; Marriah N. Green; Erwan Michard; Alexander A. Simon; José A. Feijó; Alexander I. Sobolevsky
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Ligand Incorporation into Protein Microcrystals for MicroED by On-Grid Soaking Structure (IF 4.862) Pub Date : 2020-10-01 Michael W. Martynowycz; Tamir Gonen
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A "Drug Sweeping" State of the TriABC Triclosan Efflux Pump from Pseudomonas aeruginosa. Structure (IF 4.862) Pub Date : 2020-09-22 Lucien Fabre,Abigail T Ntreh,Amira Yazidi,Inga V Leus,Jon W Weeks,Sudipta Bhattacharyya,Jakob Ruickoldt,Isabelle Rouiller,Helen I Zgurskaya,Jurgen Sygusch
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Biophysical Characterization of Pro-apoptotic BimBH3 Peptides Reveals an Unexpected Capacity for Self-Association. Structure (IF 4.862) Pub Date : 2020-09-22 Tufa E Assafa,Sukhendu Nandi,Dariusz Śmiłowicz,Laura Galazzo,Markus Teucher,Christina Elsner,Stefanie Pütz,Stephanie Bleicken,Adeline Y Robin,Dana Westphal,Isabel Uson,Raphael Stoll,Peter E Czabotar,Nils Metzler-Nolte,Enrica Bordignon
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Molecular Mechanism of LEDGF/p75 Dimerization. Structure (IF 4.862) Pub Date : 2020-09-17 Vanda Lux,Tine Brouns,Kateřina Čermáková,Pavel Srb,Milan Fábry,Marcela Mádlíková,Magdalena Hořejší,Zdeněk Kukačka,Petr Novák,Michael Kugler,Jiří Brynda,Jan DeRijck,Frauke Christ,Zeger Debyser,Václav Veverka