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Human regulatory T cells turn into cytotoxic ‘exTreg’ cells in atherosclerosis Nat. Immunol. (IF 30.5) Pub Date : 2023-09-21
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Multimodal single-cell datasets characterize antigen-specific CD8+ T cells across SARS-CoV-2 vaccination and infection Nat. Immunol. (IF 30.5) Pub Date : 2023-09-21 Bingjie Zhang, Rabi Upadhyay, Yuhan Hao, Marie I. Samanovic, Ramin S. Herati, John D. Blair, Jordan Axelrad, Mark J. Mulligan, Dan R. Littman, Rahul Satija
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Post-COVID-19 epigenetic signatures Nat. Immunol. (IF 30.5) Pub Date : 2023-09-21 Laurie A. Dempsey
Systemic infection or inflammation can result in long-lasting changes in hematopoiesis by skewing the differentiation of hematopoietic stem progenitor cells (HSPCs) toward myeloid cell lineages. Such reprogramming of HSPC potential is driven by epigenetic changes that alter gene expression programs. In Cell, Cheong et al. examine how severe SARS-CoV-2 infection in humans affects epigenetic states in
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γδ stress detectors Nat. Immunol. (IF 30.5) Pub Date : 2023-09-21 Nicholas J. Bernard
γδ T cells are well suited to fighting cancer owing to an ability to detect stressed cells through T cell receptors that are generally not restricted to antigen-presenting molecules, unlike αβ T cell receptors. This mechanism of general stress sensing can potentially enable the detection and lysis of a more diverse range of tumors. Data published in Nature now show the molecular complexity of this
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Vaccine-induced CD8+ T cells are key to protection from SARS-CoV-2 Nat. Immunol. (IF 30.5) Pub Date : 2023-09-21 Elie Antoun, Yanchun Peng, Tao Dong
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Prior vaccination promotes early activation of memory T cells and enhances immune responses during SARS-CoV-2 breakthrough infection Nat. Immunol. (IF 30.5) Pub Date : 2023-09-21 Mark M. Painter, Timothy S. Johnston, Kendall A. Lundgreen, Jefferson J. S. Santos, Juliana S. Qin, Rishi R. Goel, Sokratis A. Apostolidis, Divij Mathew, Bria Fulmer, Justine C. Williams, Michelle L. McKeague, Ajinkya Pattekar, Ahmad Goode, Sean Nasta, Amy E. Baxter, Josephine R. Giles, Ashwin N. Skelly, Laura E. Felley, Maura McLaughlin, Joellen Weaver, Oliva Kuthuru, Jeanette Dougherty, Sharon Adamski
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Discrimination of cell-intrinsic and environment-dependent effects of natural genetic variation on Kupffer cell epigenomes and transcriptomes Nat. Immunol. (IF 30.5) Pub Date : 2023-09-21 Hunter Bennett, Ty D. Troutman, Enchen Zhou, Nathanael J. Spann, Verena M. Link, Jason S. Seidman, Christian K. Nickl, Yohei Abe, Mashito Sakai, Martina P. Pasillas, Justin M. Marlman, Carlos Guzman, Mojgan Hosseini, Bernd Schnabl, Christopher K. Glass
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Multivalent virus-like epitope display amplifies BCR signaling independent of avidity Nat. Immunol. (IF 30.5) Pub Date : 2023-09-18
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Disorder-based T cell developmental order Nat. Immunol. (IF 30.5) Pub Date : 2023-09-14 Shuai Liu, Keji Zhao
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Cancer- and infection-induced T cell exhaustion are distinct Nat. Immunol. (IF 30.5) Pub Date : 2023-09-14 Jessica Buck, Nikhil S. Joshi
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Activation of the transcription factor NFAT5 in the tumor microenvironment enforces CD8+ T cell exhaustion Nat. Immunol. (IF 30.5) Pub Date : 2023-09-14 Laure Tillé, Daniela Cropp, Mélanie Charmoy, Patrick Reichenbach, Massimo Andreatta, Tania Wyss, Gabrielle Bodley, Isaac Crespo, Sina Nassiri, Joao Lourenco, Marine M. Leblond, Cristina Lopez-Rodriguez, Daniel E. Speiser, George Coukos, Melita Irving, Santiago J. Carmona, Werner Held, Grégory Verdeil
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Nutrition impact on ILC3 maintenance and function centers on a cell-intrinsic CD71–iron axis Nat. Immunol. (IF 30.5) Pub Date : 2023-09-14 Lifeng Xiong, Eric Y. Helm, Joseph W. Dean, Na Sun, Felix R. Jimenez-Rondan, Liang Zhou
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Control of nutrient uptake by IRF4 orchestrates innate immune memory Nat. Immunol. (IF 30.5) Pub Date : 2023-09-11 Endi K. Santosa, Hyunu Kim, Timo Rückert, Jean-Benoît Le Luduec, Aamna J. Abbasi, Claire K. Wingert, Lila Peters, Joe N. Frost, Katharine C. Hsu, Chiara Romagnani, Joseph C. Sun
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CXCR6 orchestrates brain CD8+ T cell residency and limits mouse Alzheimer’s disease pathology Nat. Immunol. (IF 30.5) Pub Date : 2023-09-07 Wei Su, Jordy Saravia, Isabel Risch, Sherri Rankin, Cliff Guy, Nicole M. Chapman, Hao Shi, Yu Sun, Anil KC, Wei Li, Hongling Huang, Seon Ah Lim, Haoran Hu, Yan Wang, Danting Liu, Yun Jiao, Ping-Chung Chen, Hadeer Soliman, Koon-Kiu Yan, Jonathan Zhang, Peter Vogel, Xueyan Liu, Geidy E. Serrano, Thomas G. Beach, Jiyang Yu, Junmin Peng, Hongbo Chi
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CD8+ T cells pump the brakes on Alzheimer’s disease Nat. Immunol. (IF 30.5) Pub Date : 2023-09-07 Katie L. Reagin, Kristen E. Funk
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Kunitz-type protease inhibitor TFPI2 remodels stemness and immunosuppressive tumor microenvironment in glioblastoma Nat. Immunol. (IF 30.5) Pub Date : 2023-09-04 Lizhi Pang, Madeline Dunterman, Songlin Guo, Fatima Khan, Yang Liu, Erfan Taefi, Atousa Bahrami, Changiz Geula, Wen-Hao Hsu, Craig Horbinski, Charles David James, Peiwen Chen
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TFPI2 is key for cancer stem cell–microglia symbiosis in glioblastoma Nat. Immunol. (IF 30.5) Pub Date : 2023-09-04
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SARS-CoV-2 reservoir in post-acute sequelae of COVID-19 (PASC) Nat. Immunol. (IF 30.5) Pub Date : 2023-09-04 Amy D. Proal, Michael B. VanElzakker, Soo Aleman, Katie Bach, Brittany P. Boribong, Marcus Buggert, Sara Cherry, Daniel S. Chertow, Helen E. Davies, Christopher L. Dupont, Steven G. Deeks, William Eimer, E. Wesley Ely, Alessio Fasano, Marcelo Freire, Linda N. Geng, Diane E. Griffin, Timothy J. Henrich, Akiko Iwasaki, David Izquierdo-Garcia, Michela Locci, Saurabh Mehandru, Mark M. Painter, Michael
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Molecular basis for potent B cell responses to antigen displayed on particles of viral size Nat. Immunol. (IF 30.5) Pub Date : 2023-08-31 Jeremy F. Brooks, Julianne Riggs, James L. Mueller, Raisa Mathenge, Wei-Yun Wholey, Alexander R. Meyer, Sekou-Tidiane Yoda, Vivasvan S. Vykunta, Hailyn V. Nielsen, Wei Cheng, Julie Zikherman
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The role of recruitment versus training in influenza-induced lasting changes to alveolar macrophage function Nat. Immunol. (IF 30.5) Pub Date : 2023-08-28 Chrysante S. Iliakis, Justina Kulikauskaite, Helena Aegerter, Fengqi Li, Federica Piattini, Claudia V. Jakubzick, Martin Guilliams, Manfred Kopf, Andreas Wack
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Reply to: The role of recruitment versus training in influenza-induced lasting changes to alveolar macrophage function Nat. Immunol. (IF 30.5) Pub Date : 2023-08-28 Tao Wang, Jinjing Zhang, Lu Wang, Yanling Wang, Ying Li, Yushi Yao
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Innate immune memory, trained immunity and nomenclature clarification Nat. Immunol. (IF 30.5) Pub Date : 2023-08-24 George Hajishengallis, Mihai G. Netea, Triantafyllos Chavakis
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Doubling down to make killer T cells Nat. Immunol. (IF 30.5) Pub Date : 2023-08-24 Dietmar Kappes, David L. Wiest
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cDC1 craves glutamine for its glory Nat. Immunol. (IF 30.5) Pub Date : 2023-08-24 Stefania Vilbois, Jaeoh Park, Ping-Chih Ho
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Modulating RNF41 Nat. Immunol. (IF 30.5) Pub Date : 2023-08-21 Laurie A. Dempsey
Liver fibrosis is a leading cause of morbidity and mortality worldwide. Whereas acute injury or infection can trigger a self-resolving inflammatory response, chronic tissue injury triggers persistent inflammation-induced fibrosis. In Science Translational Medicine, Moreno-Lanceta et al. examine the role of the E3 ubiquitin ligase RNF41 in the progression of hepatic fibrosis, and how altered RNF41 expression
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Restriction factor Nat. Immunol. (IF 30.5) Pub Date : 2023-08-21 Ioana Visan
Interferon-γ (IFNγ) orchestrates the immune response to SARS-CoV-2. In Nature, Xu et al. use genome-wide screens in human hepatocyte and lung epithelial cell lines to identify PLSCR1, a phospholipid scramblase upregulated by SARS-CoV-2 infection and type I, II and III IFN in a variety of human cells, including primary tracheal epithelia, as a restriction factor against SARS-CoV-2. Overexpression of
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Expanding Vδ1 T cells Nat. Immunol. (IF 30.5) Pub Date : 2023-08-21 Nicholas J. Bernard
γδ T cells are protective against many tumors, but the relative contribution of different subsets to this protective effect is unknown. Data now published in Nature Cancer show that Vδ1+ T cells are associated with protection against endometrial and other cancers, but not against colorectal cancer. This disparity is present even though both endometrial and colorectal tumors are enriched with Vδ1+ T
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lnc(RNA)-ing myeloid metabolism Nat. Immunol. (IF 30.5) Pub Date : 2023-08-21 Stephanie Houston
Long noncoding RNAs (lncRNAs) have been implicated in the development of ulcerative colitis through the regulation of miRNA expression or modulation of intestinal epithelial barrier function. In Cell Metabolism, Shmuel-Galia et al. show that the lncRNA HOXA11os regulates myeloid cell metabolism in the colon to maintain intestinal homeostasis, and this may have a role in ulcerative colitis. Transcriptomic
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Single-cell diversity and functional plasticity of human MAIT cells Nat. Immunol. (IF 30.5) Pub Date : 2023-08-21
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Intrinsically disordered domain of transcription factor TCF-1 is required for T cell developmental fidelity Nat. Immunol. (IF 30.5) Pub Date : 2023-08-17 Naomi Goldman, Aditi Chandra, Isabelle Johnson, Matthew A. Sullivan, Abhijeet R. Patil, Ashley Vanderbeck, Atishay Jay, Yeqiao Zhou, Emily K. Ferrari, Leland Mayne, Jennifer Aguilan, Hai-Hui Xue, Robert B. Faryabi, E. John Wherry, Simone Sidoli, Ivan Maillard, Golnaz Vahedi
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Baseline innate and T cell populations are correlates of protection against symptomatic influenza virus infection independent of serology Nat. Immunol. (IF 30.5) Pub Date : 2023-08-17 Robert C. Mettelman, Aisha Souquette, Lee-Ann Van de Velde, Kasi Vegesana, E. Kaitlynn Allen, Christina M. Kackos, Sanja Trifkovic, Jennifer DeBeauchamp, Taylor L. Wilson, Deryn G. St. James, Smrithi S. Menon, Timothy Wood, Lauren Jelley, Richard J. Webby, Q. Sue Huang, Paul G. Thomas
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Alt-RNAtive vaccines elicit anti-malarial TRM cells Nat. Immunol. (IF 30.5) Pub Date : 2023-08-14 Mariah Hassert, John T. Harty
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Specialization determines outcomes in inflammation and cancer Nat. Immunol. (IF 30.5) Pub Date : 2023-08-14 Antonio Sica, Massimo Lazzeri
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The road not taken en route to T cell exhaustion Nat. Immunol. (IF 30.5) Pub Date : 2023-08-14 Barsha Dash, Patrick G. Hogan
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Short-term dietary changes can result in mucosal and systemic immune depression Nat. Immunol. (IF 30.5) Pub Date : 2023-08-14 Francesco Siracusa, Nicola Schaltenberg, Yogesh Kumar, Till R. Lesker, Babett Steglich, Timur Liwinski, Filippo Cortesi, Laura Frommann, Björn-Phillip Diercks, Friedericke Bönisch, Alexander W. Fischer, Pasquale Scognamiglio, Mira J. Pauly, Christian Casar, Yotam Cohen, Penelope Pelczar, Theodora Agalioti, Flemming Delfs, Anna Worthmann, Ramez Wahib, Bettina Jagemann, Hans-Willi Mittrücker, Oliver
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Single-cell multiomic analysis of thymocyte development reveals drivers of CD4+ T cell and CD8+ T cell lineage commitment Nat. Immunol. (IF 30.5) Pub Date : 2023-08-14 Zoë Steier, Dominik A. Aylard, Laura L. McIntyre, Isabel Baldwin, Esther Jeong Yoon Kim, Lydia K. Lutes, Can Ergen, Tse-Shun Huang, Ellen A. Robey, Nir Yosef, Aaron Streets
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Single-cell analysis of human MAIT cell transcriptional, functional and clonal diversity Nat. Immunol. (IF 30.5) Pub Date : 2023-08-14 Lucy C. Garner, Ali Amini, Michael E. B. FitzPatrick, Martin J. Lett, Gabriel F. Hess, Magdalena Filipowicz Sinnreich, Nicholas M. Provine, Paul Klenerman
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Runx factors launch T cell and innate lymphoid programs via direct and gene network-based mechanisms Nat. Immunol. (IF 30.5) Pub Date : 2023-08-10 Boyoung Shin, Wen Zhou, Jue Wang, Fan Gao, Ellen V. Rothenberg
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Genetics of circulating inflammatory proteins identifies drivers of immune-mediated disease risk and therapeutic targets Nat. Immunol. (IF 30.5) Pub Date : 2023-08-10 Jing Hua Zhao, David Stacey, Niclas Eriksson, Erin Macdonald-Dunlop, Åsa K. Hedman, Anette Kalnapenkis, Stefan Enroth, Domenico Cozzetto, Jonathan Digby-Bell, Jonathan Marten, Lasse Folkersen, Christian Herder, Lina Jonsson, Sarah E. Bergen, Christian Gieger, Elise J. Needham, Praveen Surendran, Dirk S. Paul, Ozren Polasek, Barbara Thorand, Harald Grallert, Michael Roden, Urmo Võsa, Tonu Esko, Caroline
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Fibrosis induced by resident macrophages has divergent roles in pancreas inflammatory injury and PDAC Nat. Immunol. (IF 30.5) Pub Date : 2023-08-10 John M. Baer, Chong Zuo, Liang-I Kang, Angela Alarcon de la Lastra, Nicholas C. Borcherding, Brett L. Knolhoff, Savannah J. Bogner, Yu Zhu, Liping Yang, Jennifer Laurent, Mark A. Lewis, Nan Zhang, Ki-Wook Kim, Ryan C. Fields, Wayne M. Yokoyama, Jason C. Mills, Li Ding, Gwendalyn J. Randolph, David G. DeNardo
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Identification of human exTreg cells as CD16+CD56+ cytotoxic CD4+ T cells Nat. Immunol. (IF 30.5) Pub Date : 2023-08-10 Antoine Freuchet, Payel Roy, Sujit Silas Armstrong, Mohammad Oliaeimotlagh, Sunil Kumar, Marco Orecchioni, Amal J. Ali, Amir Khan, Jeffrey Makings, Qingkang Lyu, Holger Winkels, Erpei Wang, Christopher Durant, Yanal Ghosheh, Rishab Gulati, Felix Nettersheim, Klaus Ley
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Hallmarks of CD8+ T cell dysfunction are established within hours of tumor antigen encounter before cell division Nat. Immunol. (IF 30.5) Pub Date : 2023-08-03 Michael W. Rudloff, Paul Zumbo, Natalie R. Favret, Jessica J. Roetman, Carlos R. Detrés Román, Megan M. Erwin, Kristen A. Murray, Sriya T. Jonnakuti, Friederike Dündar, Doron Betel, Mary Philip
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Climate change: it’s on us too Nat. Immunol. (IF 30.5) Pub Date : 2023-07-31 Rachel Niec, Thiago L. Carvalho, Daniel Mucida
The effects of climate change driven by human activity are now part of the daily news cycle, and time is running out for decisive action.
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NF-κB subunits direct kinetically distinct transcriptional cascades in antigen receptor-activated B cells Nat. Immunol. (IF 30.5) Pub Date : 2023-07-31 Mingming Zhao, Prashant Chauhan, Cheryl A. Sherman, Amit Singh, Mary Kaileh, Krystyna Mazan-Mamczarz, Hongkai Ji, Jaimy Joy, Satabdi Nandi, Supriyo De, Yongqing Zhang, Jinshui Fan, Kevin G. Becker, Png Loke, Weiqiang Zhou, Ranjan Sen
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A toolbox for studying the transcriptional diversity and functions of human microglia in vitro Nat. Immunol. (IF 30.5) Pub Date : 2023-07-27
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CTLA-4 tail fusion enhances CAR-T antitumor immunity Nat. Immunol. (IF 30.5) Pub Date : 2023-07-27 Xiaoyu Zhou, Hanbing Cao, Shao-Yu Fang, Ryan D. Chow, Kaiyuan Tang, Medha Majety, Meizhu Bai, Matthew B. Dong, Paul A. Renauer, Xingbo Shang, Kazushi Suzuki, Andre Levchenko, Sidi Chen
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Exposure of iPSC-derived human microglia to brain substrates enables the generation and manipulation of diverse transcriptional states in vitro Nat. Immunol. (IF 30.5) Pub Date : 2023-07-27 Michael-John Dolan, Martine Therrien, Saša Jereb, Tushar Kamath, Vahid Gazestani, Trevor Atkeson, Samuel E. Marsh, Aleksandrina Goeva, Neal M. Lojek, Sarah Murphy, Cassandra M. White, Julia Joung, Bingxu Liu, Francesco Limone, Kevin Eggan, Nir Hacohen, Bradley E. Bernstein, Christopher K. Glass, Ville Leinonen, Mathew Blurton-Jones, Feng Zhang, Charles B. Epstein, Evan Z. Macosko, Beth Stevens
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Apoptotic contraction drives target cell release by cytotoxic T cells Nat. Immunol. (IF 30.5) Pub Date : 2023-07-27 Elisa E. Sanchez, Maria Tello-Lafoz, Aixuan J. Guo, Miguel de Jesus, Yassmin A. Elbanna, Benjamin Y. Winer, Sadna Budhu, Eric Chan, Eric Rosiek, Taisuke Kondo, Justyn DuSold, Naomi Taylor, Gregoire Altan-Bonnet, Michael F. Olson, Morgan Huse
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TIM-1ly roles for B cells Nat. Immunol. (IF 30.5) Pub Date : 2023-07-24 Laurie A. Dempsey
The role of B cells in antitumor immunity remains unclear. In Nature, Bod et al. use a mouse B16F10 melanoma model to characterize tumor-associated B cells phenotypically and functionally. Whereas B cell depletion enhances tumor growth, loss of plasma cells has no effect on tumor immunity. Transcriptomic profiling identified a distinct proliferative B cell subset that increased over time in the tumor-draining
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Cancer presenting cells Nat. Immunol. (IF 30.5) Pub Date : 2023-07-24 Nicholas J. Bernard
Cancer antigen cross presentation by type 1 conventional dendritic cells (cDC1s) is thought to be crucial for antitumor CD8+ T cell responses and immune checkpoint inhibitor (ICI) efficacy, but tumor cells use various strategies to prevent this immunogenicity. Data published in Science Immunology show that cancer cells can be reprogrammed into professional antigen-presenting cDC1-like cells to boost
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New SARS-CoV-2 receptor Nat. Immunol. (IF 30.5) Pub Date : 2023-07-24 Ioana Visan
SARS-CoV-2 has a broad tissue tropism. In Cell, Baggen et al. show that the lysosomal transmembrane protein TMEM106B directly engages the receptor-binding domain (RBD) of the viral spike protein and functions as a receptor for SARS-CoV-2. E484D substitutions in the spike protein, which are detected in circulating SARS-CoV-2 isolates, increase SARS-CoV-2 infection in a manner dependent on TMEM106B,
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Long live T cells Nat. Immunol. (IF 30.5) Pub Date : 2023-07-24 Stephanie Houston
Tissue-resident memory T (TRM) cells are generated at sites of previous antigen exposure and are required to coordinate rapid protective responses after reinfection, and these populations are stable in adulthood. In Immunity, Connors et al. find that human memory T cells that accrue in mucosal sites during the first 3 years of life lack proinflammatory function and have reduced expression of TRM cell
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The case for BALT in human respiratory immunity Nat. Immunol. (IF 30.5) Pub Date : 2023-07-24 Zhoujie Ding, David Tarlinton
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LAG-3 as the third checkpoint inhibitor Nat. Immunol. (IF 30.5) Pub Date : 2023-07-24 Vaishali Aggarwal, Creg J. Workman, Dario A. A. Vignali
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Formation of bronchus-associated lymphoid tissue (BALT) for early life immune protection Nat. Immunol. (IF 30.5) Pub Date : 2023-07-20
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Functional T cell tolerance by peripheral tissue-based checkpoint control Nat. Immunol. (IF 30.5) Pub Date : 2023-07-20 Francis R. Carbone, Laura K. Mackay
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EGR2 drives TH17 cell pathogenicity in autoimmune neuroinflammation Nat. Immunol. (IF 30.5) Pub Date : 2023-07-20