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Targeting double-stranded nucleic acids using the λExo–pDNA system Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-18
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A developmental route to hematopoietic stem cells Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-18 Adam C. Wilkinson, Marella F. T. R. de Bruijn
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Bacteriophage λ exonuclease and a 5′-phosphorylated DNA guide allow PAM-independent targeting of double-stranded nucleic acids Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-18 Shengnan Fu, Junjie Li, Jing Chen, Linghao Zhang, Jiajia Liu, Huiyu Liu, Xin Su
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An experimental census of retrons for DNA production and genome editing Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-17 Asim G. Khan, Matías Rojas-Montero, Alejandro González-Delgado, Santiago C. Lopez, Rebecca F. Fang, Kate D. Crawford, Seth L. Shipman
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Biotech news from around the world Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Researchers from Kenya’s Egerton University and Makerere University in Uganda begin a pilot program to mass breed desert locusts as a sustainable, protein-rich food source for animals and humans. The locusts are grown in giant domed-shaped, temperature- and humidity-controlled greenhouses equipped with wire gauze cages to stop them escaping. The Locust4Industry project aims to enable industrial exploitation
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FDA approves first IDH-targeted glioma drug Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Voranigo (vorasidenib), made by French drugmaker Servier Pharmaceuticals, was approved in August by the US Food and Drug Administration. The small-molecule isocitrate dehydrogenase-1 (IDH1) and isocitrate dehydrogenase-2 (IDH2) inhibitor has the go-ahead to treat patients with grade 2 astrocytoma or oligodendroglioma with IDH1 or IDH2 mutations. The approval follows a successful phase 3 trial showing
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Engineered parasite delivers therapeutic proteins to the mouse brain Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13 Iris Marchal
Macromolecular drugs have limited applications in the brain because they cannot cross the blood–brain barrier. A parasite that does have the natural capacity to travel to the brain is Toxoplasma gondii. In a study in Nature Microbiology, Bracha et al. make use of this feature, engineering T. gondii to deliver large proteins to the brains of mice. The authors targeted several proteins with different
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Genentech, Sangamo ink Alzheimer’s deal Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Genentech, part of Roche, has signed an exclusive license with Sangamo Therapeutics to develop genomic treatments for two neurodegenerative diseases. Sangamo will receive $50 million up front and could earn up to $1.9 billion in development and commercial milestone payments plus tiered royalties for its proprietary zinc finger repressors directed to the gene encoding the tau protein, which is involved
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Biogenetic Blooms: it’s microbial, and it’s art Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Nearly a century later, in a bungalow three blocks from the sun-baked crowds of Rockaway Beach, New York, Karen Ingram meticulously paints portraits of flower blossoms in a Petri dish using a medium of yeast. She calls her series “Biogenetic Blooms”: blue roses, yellow and orange daffodils, red tulips, pink orchids, columbines, snapdragons, irises, black-eyed Susans. The process is surprisingly tricky
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Targeting fatty acid metabolism promotes a healthy vaginal microbiome Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13 Iris Marchal
Specific microbial communities in the female genital tract are linked to health outcomes; for example, a microbiome deficient in Lactobacillus is observed in bacterial vaginosis. However, available therapies may not effectively promote the growth of beneficial bacterial species that could prevent the recurrence of disease. Writing in Cell, Zhu et al. propose that targeting unsaturated long-chain fatty
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From Bench to Podcast: Nicoletta Cieri Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
On this episode, our Associate Editor Cláudia Vilhena interviews Nicoletta Cieri, the first author of a great story on how a devised analytic framework can aid in the prevention of post-transplant disease recurrence. Join us as Nicoletta and Cláudia explore the highlights of the story, discuss the future of individualized medicine and touch base on future career opportunities following the postdoc
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Bioremediation Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Recent patents relating to compositions and methods for the remediation of polluted and contaminated environments.
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US selects first ten drugs for price drops Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
A historic law that negotiates price discounts for Medicare prescription drugs has led to the selection of the first ten drugs to be covered by these negotiations. From January 2026, enrollees will pay between 38% and 79% less for the ten commonly prescribed outpatient drugs. The negotiated prices are expected to save taxpayers billions of dollars. The biopharma industry, however, argues that the prices
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Intestinal organoids with an autologous immune compartment Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13 Iris Marchal
Although stem-cell derived organoids are useful tools for studying epithelial functions in health and disease, they generally lack the immune compartment critical for modeling organ-level processes. In a paper published in Nature, Recaldin et al. now integrate tissue-resident memory T (TRM) cells into human intestinal organoids and show how this model can be used to gain insight into drug-induced intestinal
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1H24 biotech job picture Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13 Michael Francisco
A semiannual snapshot of job expansions, reductions and availability in the biotech and pharma sectors.
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Enzymes boost ‘rock weathering’ to trap CO2 in soil Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Spreading powdered basalt on farmland traps CO2 from the atmosphere, a technology that is cheap, requires no huge steel reactors and, with a biotech boost, may even reduce fertilizer use.
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People Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Recent moves of note in and around the biotech and pharma industries.
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The prevalence of post-NDA drug patents and their relationship to the timing of generic approval Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13 Jonathan J. Darrow, Victor Van de Wiele, Beatrice Brown, Aaron S. Kesselheim
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A virtual case competition approach to bridging business acumen and biomedical graduate training Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13 Kara M. Donovan, Robert S. Goldsmith, Erica V. Ely, Samridhi Garg, Lloyd P. Ruiz, Mitre Athaiya, Sophia Meyer, Michelle Sydney Smith, Ishtiaq Mawla
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Foundation models build on ChatGPT tech to learn the fundamental language of biology Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13
Scientists are using ever more sophisticated AI algorithms trained on vast, unlabeled datasets to develop models that can ‘interpret’ biological data to help guide biomolecule design.
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The Wild West of spike-in normalization Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-13 Lauren A. Patel, Yuwei Cao, Eric M. Mendenhall, Christopher Benner, Alon Goren
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Recoded gene circuits for multiplexed genetic code expansion Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-11
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Dedifferentiating myoblasts back into a satellite cell state in vitro Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-11
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Organoid culture promotes dedifferentiation of mouse myoblasts into stem cells capable of complete muscle regeneration Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-11 Feodor D. Price, Mark N. Matyas, Andrew R. Gehrke, William Chen, Erica A. Wolin, Kristina M. Holton, Rebecca M. Gibbs, Alice Lee, Pooja S. Singu, Jeffrey S. Sakakeeny, James M. Poteracki, Kelsey Goune, Isabella T. Pfeiffer, Sarah A. Boswell, Peter K. Sorger, Mansi Srivastava, Kathleen Lindahl Pfaff, Emanuela Gussoni, Sean M. Buchanan, Lee L. Rubin
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Efficient genetic code expansion without host genome modifications Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-11 Alan Costello, Alexander A. Peterson, David L. Lanster, Zhiyi Li, Gavriela D. Carver, Ahmed H. Badran
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Phage genome engineering with retrons Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-09 Ilya Osterman, Rotem Sorek
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Pandemic preparedness demands proper prioritization Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-05
We have learned many lessons from COVID-19, but how to get vaccines to low- and middle-income countries effectively isn’t one of them.
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Continuous multiplexed phage genome editing using recombitrons Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-05 Chloe B. Fishman, Kate D. Crawford, Santi Bhattarai-Kline, Darshini Poola, Karen Zhang, Alejandro González-Delgado, Matías Rojas-Montero, Seth L. Shipman
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Long-term engrafting multilineage hematopoietic cells differentiated from human induced pluripotent stem cells Nat. Biotechnol. (IF 33.1) Pub Date : 2024-09-02 Elizabeth S. Ng, Gulcan Sarila, Jacky Y. Li, Hasindu S. Edirisinghe, Ritika Saxena, Shicheng Sun, Freya F. Bruveris, Tanya Labonne, Nerida Sleebs, Alexander Maytum, Raymond Y. Yow, Chantelle Inguanti, Ali Motazedian, Vincenzo Calvanese, Sandra Capellera-Garcia, Feiyang Ma, Hieu T. Nim, Mirana Ramialison, Constanze Bonifer, Hanna K. A. Mikkola, Edouard G. Stanley, Andrew G. Elefanty
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Editor’s pick: Atomic AI Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-26
Each year, Nature Biotechnology highlights companies that have received sizeable early-stage funding in the previous year. Atomic AI generates the structure data it needs for its AI model with the aim of RNA drug discovery.
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Genome editing with DNA-dependent polymerases Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-23 Quinn T. Cowan, Alexis C. Komor
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Framework for predicting alloreactivity in hematopoietic cell transplants Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-21
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Small molecules self-organized in an orderly manner to enhance Raman signals Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-21
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Self-stacked small molecules for ultrasensitive, substrate-free Raman imaging in vivo Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-21 Shuai Gao, Yongming Zhang, Kai Cui, Sihang Zhang, Yuanyuan Qiu, Yunhui Liao, Haoze Wang, Sheng Yu, Liyang Ma, Hongzhuan Chen, Minbiao Ji, Xiaohong Fang, Wei Lu, Zeyu Xiao
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Systematic identification of minor histocompatibility antigens predicts outcomes of allogeneic hematopoietic cell transplantation Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-21 Nicoletta Cieri, Nidhi Hookeri, Kari Stromhaug, Liang Li, Julia Keating, Paula Díaz-Fernández, Valle Gómez-García de Soria, Jonathan Stevens, Raphael Kfuri-Rubens, Yiren Shao, Kameron A. Kooshesh, Kaila Powell, Helen Ji, Gabrielle M. Hernandez, Jennifer Abelin, Susan Klaeger, Cleo Forman, Karl R. Clauser, Siranush Sarkizova, David A. Braun, Livius Penter, Haesook T. Kim, William J. Lane, Giacomo Oliveira
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Editor’s pick: Cargo Therapeutics Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-19
Each year, Nature Biotechnology highlights companies that have received sizeable early-stage funding in the previous year. A rescued chimeric antigen receptor from Cargo Therapeutics for hard-to-treat lymphomas shows promise in patients while a trispecific advances toward human testing.
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A base editor modifies bacterial genes in the guts of living mice Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14 Iris Marchal
Bacterial strains and genes within the microbiome are increasingly being linked to human health. Exploring these interactions in detail could open the door to microbiome-based therapies. However, modifying specific bacterial populations in vivo without killing them has not yet been achieved. Writing in Nature, Brödel et al. address this challenge by engineering a phage-derived particle to deliver a
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Microbes: next-generation fertilizers Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14
Governments and big agbiotech players are betting on plant-symbiotic bacteria to improve crop growth without the need for chemical fertilizers. Syngenta Biologicals and Intrinsyx Bio have entered a collaboration to exploit endophytes — naturally occurring symbiotic bacteria discovered living in trees thriving in unusually harsh conditions. The endophytes developed by Intrinsyx benefit plant health
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Spanish tortillas go vegan Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14
To make its animal-free egg alternative, Every engineered the yeast Komagataella phaffii (formerly named Pichia pastoris) to express egg proteins. The yeast grows in bioreactor tanks and secretes protein into the broth, which is then filtered. Because the genetically engineered yeast is no longer present in the final product, Every Egg is not considered bioengineered. It has received Generally Recognized
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Joint profiling of drug–chromatin binding and epigenetic landscapes in single cells Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14 Iris Marchal
Mapping small-molecule drugs that bind DNA or protein on chromatin is fundamental for understanding their function. Studying these binding dynamics within the epigenetic landscape could improve our understanding of cell-type-specific drug actions. A paper in Nature Methods by Dong et al. introduces scEpiChem, a method that combines small-molecule drug binding with multimodal epigenetic profiling in
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HIV drug 100% protective Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14
A drug has completely prevented HIV infections in a phase 3 trial, the first time this has been achieved. Gilead’s antiretroviral drug lenacapavir was tested in over 5,300 young women in South Africa and Uganda, and none of them developed HIV infection. The HIV-1 capsid inhibitor was delivered by subcutaneous injections twice a year for pre-exposure prophylaxis. In the group of women who were instead
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From Bench to Podcast: Sean Johnson Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14
On this episode, our Associate Editor Cláudia Vilhena interviews Sean Johnson, the first author of a great story on how to experimentally evaluate the performance of AI-generated enzymes. Sean and Cláudia discuss the timely topic of AI for protein design and the implications for future research, and also touch base on how it was to transition from academia to industry.
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Biotech news from around the world Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14
1. DENMARK Novo Holdings partners with DLG Group to advance sustainable agriculture and food systems by acquiring 25% of the shares in Horsens-based Sejet Plant Breeding, a DLG subsidiary. Sejet uses new genomic technologies to breed new crop varieties adapted to current and future growing conditions.
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Bridge RNAs direct programmable DNA rearrangements Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14 Iris Marchal
The gene editing toolbox is still lacking systems that are capable of precise kilobase-scale DNA modifications. Mobile elements found in bacteria, such as insertion sequences (IS), can orchestrate such large genomic rearrangements, but it has been difficult to reprogram their associated enzymes to target sequence-specific genomic sites. Two papers in Nature now report an RNA-guided recombinase that
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Single-cell analysis Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14
Recent patents relating to compositions, methods and systems for single-cell analysis.
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Biotechs take multiplexing into animal models to accelerate drug discovery Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14
Companies are moving therapeutic testing from plastic wells into pooled in vivo screening, generating physiologically relevant data by screening many drug candidates at once in a single animal.
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People Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14
Recent moves of note in and around the biotech and pharma industries.
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The patentability and bioethics of molecular de-extinction Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14 Andrew W. Torrance, Cesar de la Fuente-Nunez
The resurrection of strings of extinct molecules raises intriguing questions of patentability and bioethical considerations in an emerging area of patent law.
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The rise of teamwork and career prospects in academic science Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14 Mabel Andalón, Catherine de Fontenay, Donna K. Ginther, Kwanghui Lim
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A new class of mRNA drugs targets poison exons Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14
Companies are targeting poison exons embedded in mRNA transcripts as a strategy to restore wild-type protein abundance and cell fitness in severe pediatric epilepsy and other genetic diseases.
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Improving the predictive power of mouse models Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14 Martin Pera, Andy Greene, Lon Cardon, Gregory W. Carter, Elissa J. Chesler, Gary Churchill, Vivek Kumar, Cathleen Lutz, Steven Munger, Steve Murray, Kristen O’Connell, Laura Reinholdt, Nadia A. Rosenthal
Comparative studies that integrate genetically diverse mouse models and in vitro cell-based assays will accelerate drug discovery for precision medicine.
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Rapid discovery of monoclonal antibodies by microfluidics-enabled FACS of single pathogen-specific antibody-secreting cells Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-14 Katrin Fischer, Aleksei Lulla, Tsz Y. So, Pehuén Pereyra-Gerber, Matthew I. J. Raybould, Timo N. Kohler, Juan Carlos Yam-Puc, Tomasz S. Kaminski, Robert Hughes, Gwendolyn L. Pyeatt, Florian Leiss-Maier, Paul Brear, Nicholas J. Matheson, Charlotte M. Deane, Marko Hyvönen, James E. D. Thaventhiran, Florian Hollfelder
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Removal of TREX1 activity enhances CRISPR–Cas9-mediated homologous recombination Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-12 Mehmet E. Karasu, Eléonore Toufektchan, Yanyang Chen, Alessandra Albertelli, Grégoire Cullot, John Maciejowski, Jacob E. Corn
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Protein language model enables fast and sensitive remote homolog detection Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-09
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Fast, sensitive detection of protein homologs using deep dense retrieval Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-09 Liang Hong, Zhihang Hu, Siqi Sun, Xiangru Tang, Jiuming Wang, Qingxiong Tan, Liangzhen Zheng, Sheng Wang, Sheng Xu, Irwin King, Mark Gerstein, Yu Li
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Slaughter-free meat hits the grocery shelf Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-07
As cultivated meat begins to enter grocery stores, governments should promote the field’s development in line with broad public goals of sustainability and accessibility.
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Enhancing siRNA efficacy in vivo with extended nucleic acid backbones Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-01 Ken Yamada, Vignesh N. Hariharan, Jillian Caiazzi, Rachael Miller, Chantal M. Ferguson, Ellen Sapp, Hassan H. Fakih, Qi Tang, Nozomi Yamada, Raymond C. Furgal, Joseph D. Paquette, Annabelle Biscans, Brianna M. Bramato, Nicholas McHugh, Ashley Summers, Clemens Lochmann, Bruno M. D. C. Godinho, Samuel Hildebrand, Samuel O. Jackson, Dimas Echeverria, Matthew R. Hassler, Julia F. Alterman, Marian DiFiglia
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Author Correction: Quantifying bias introduced by sample collection in relative and absolute microbiome measurements. Nat. Biotechnol. (IF 33.1) Pub Date : 2024-08-01 Dylan G Maghini,Mai Dvorak,Alex Dahlen,Morgan Roos,Boryana Doyle,Scott Kuersten,Ami S Bhatt
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A CAR enhancer increases the activity and persistence of CAR T cells Nat. Biotechnol. (IF 33.1) Pub Date : 2024-07-30 Taha Rakhshandehroo, Shreya R. Mantri, Heydar Moravej, Benjamin B. V. Louis, Ali Salehi Farid, Leila Munaretto, Kathryn Regan, Radia M. M. Khan, Alexandra Wolff, Zoe Farkash, Min Cong, Adrien Kuhnast, Ali Nili, Uk-Jae Lee, Harris H. Allen, Lea Berland, Ester Simkova, Safak C. Uslu, Soheil Tavakolpour, Jennifer E. Rowley, Elisabeth Codet, Haneyeh Shahbazian, Jessika Baral, Jason Pyrdol, Caron A. Jacobson