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Gradient nanostructured steel with superior tensile plasticity Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Zhongxia Shang, Tianyi Sun, Jie Ding, Nicholas A. Richter, Nathan M. Heckman, Benjamin C. White, Brad L. Boyce, Khalid Hattar, Haiyan Wang, Xinghang Zhang
Nanostructured metallic materials with abundant high-angle grain boundaries exhibit high strength and good radiation resistance. While the nanoscale grains induce high strength, they also degrade tensile ductility. We show that a gradient nanostructured ferritic steel exhibits simultaneous improvement in yield strength by 36% and uniform elongation by 50% compared to the homogenously structured counterpart
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Manipulation of an electron by photoirradiation in the electron-catalyzed cross-coupling reaction Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Eiji Shirakawa, Yuki Ota, Kyohei Yonekura, Keisho Okura, Sahiro Mizusawa, Sujan Kumar Sarkar, Manabu Abe
An electron has recently been shown to catalyze the cross-coupling reaction of organometallic compounds with aryl halides. In terms of green and sustainable chemistry, the electron catalysis is much more desirable than the inevitably used transition metal catalysis but a high temperature of more than 100°C is required to achieve it. Here, we disclose that visible light photoirradiation accelerates
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An AAV-CRISPR/Cas9 strategy for gene editing across divergent rodent species: Targeting neural oxytocin receptors as a proof of concept Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Arjen J. Boender, Marina Boon, H. Elliott Albers, Samantha R. Eck, Brandon A. Fricker, Aubrey M. Kelly, Joseph E. LeDoux, Simone C. Motta, Prerana Shrestha, Jack H. Taylor, Brian C. Trainor, Rodrigo Triana-Del Rio, Larry J. Young
A major issue in neuroscience is the poor translatability of research results from preclinical studies in animals to clinical outcomes. Comparative neuroscience can overcome this barrier by studying multiple species to differentiate between species-specific and general mechanisms of neural circuit functioning. Targeted manipulation of neural circuits often depends on genetic dissection, and use of
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Yield-stress transition in suspensions of deformable droplets Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Giuseppe Negro, Livio Nicola Carenza, Giuseppe Gonnella, Fraser Mackay, Alexander Morozov, Davide Marenduzzo
Yield-stress materials, which require a sufficiently large forcing to flow, are currently ill-understood theoretically. To gain insight into their yielding transition, we study numerically the rheology of a suspension of deformable droplets in 2D. We show that the suspension displays yield-stress behavior, with droplets remaining motionless below a critical body-force. In this phase, droplets jam to
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Wafer-patterned, permeable, and stretchable liquid metal microelectrodes for implantable bioelectronics with chronic biocompatibility Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Qiuna Zhuang, Kuanming Yao, Mengge Wu, Zhuogui Lei, Fan Chen, Jiyu Li, Quanjing Mei, Yingying Zhou, Qiyao Huang, Xin Zhao, Ying Li, Xinge Yu, Zijian Zheng
Implantable bioelectronics provide unprecedented opportunities for real-time and continuous monitoring of physiological signals of living bodies. Most bioelectronics adopt thin-film substrates such as polyimide and polydimethylsiloxane that exhibit high levels of flexibility and stretchability. However, the low permeability and relatively high modulus of these thin films hamper the long-term biocompatibility
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Gain-of-function mutations in the catalytic domain of DOT1L promote lung cancer malignant phenotypes via the MAPK/ERK signaling pathway Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Jiayu Zhang, Ting Yang, Mei Han, Xiaoxuan Wang, Weiming Yang, Ning Guo, Yong Ren, Wei Cui, Shangxiao Li, Yongshan Zhao, Xin Zhai, Lina Jia, Jingyu Yang, Chunfu Wu, Lihui Wang
Lung cancer is a lethal malignancy lacking effective therapies. Emerging evidence suggests that epigenetic enzyme mutations are closely related to the malignant phenotype of lung cancer. Here, we identified a series of gain-of-function mutations in the histone methyltransferase DOT1L. The strongest of them is R231Q, located in the catalytic DOT domain. R231Q can enhance the substrate binding ability
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Probing and harnessing photonic Fermi arc surface states using light-matter interactions Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Iñaki García-Elcano, Jaime Merino, Jorge Bravo-Abad, Alejandro González-Tudela
Fermi arcs, i.e., surface states connecting topologically distinct Weyl points, represent a paradigmatic manifestation of the topological aspects of Weyl physics. We investigate a light-matter interface based on the photonic counterpart of these states and prove that it can lead to phenomena with no analog in other setups. First, we show how to image the Fermi arcs by studying the spontaneous decay
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Geological sketch map and implications for ice flow of Thwaites Glacier, West Antarctica, from integrated aerogeophysical observations Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Tom A. Jordan, Sarah Thompson, Bernd Kulessa, Fausto Ferraccioli
The geology beneath Thwaites Glacier, the Antarctic glacial catchment most vulnerable to climate change, is unknown. Thwaites Glacier lies within the West Antarctic Rift System, but details of the subglacial geology relevant to glacial flow, including sediment availability, underlying lithology, and heat flux, are lacking. We present the first sketch map of the subglacial geology of Thwaites Glacier
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Toward highly efficient deep-blue OLEDs: Tailoring the multiresonance-induced TADF molecules for suppressed excimer formation and near-unity horizontal dipole ratio Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Hyung Suk Kim, Hyung Jin Cheon, Donggyun Lee, Woochan Lee, Junho Kim, Yun-Hi Kim, Seunghyup Yoo
Boron-based compounds exhibiting a multiresonance thermally activated delayed fluorescence are regarded promising as a narrowband blue emitter desired for efficient displays with wide color gamut. However, their planar nature makes them prone to concentration-induced excimer formation that broadens the emission spectrum, making it hard to increase the emitter concentration without raising CIE y coordinate
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Structural basis of purine nucleotide inhibition of human uncoupling protein 1 Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Scott A. Jones, Prerana Gogoi, Jonathan J. Ruprecht, Martin S. King, Yang Lee, Thomas Zögg, Els Pardon, Deepak Chand, Stefan Steimle, Danielle M. Copeman, Camila A. Cotrim, Jan Steyaert, Paul G. Crichton, Vera Moiseenkova-Bell, Edmund R. S. Kunji
Mitochondrial uncoupling protein 1 (UCP1) gives brown adipose tissue of mammals its specialized ability to burn calories as heat for thermoregulation. When activated by fatty acids, UCP1 catalyzes the leak of protons across the mitochondrial inner membrane, short-circuiting the mitochondrion to generate heat, bypassing ATP synthesis. In contrast, purine nucleotides bind and inhibit UCP1, regulating
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Surficial nano-deposition locoregionally yielding bactericidal super CAR-macrophages expedites periprosthetic osseointegration Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Ziyang Li, Shengchang Zhang, Zhipeng Fu, Ying Liu, Zhentao Man, Chongdeng Shi, Chunwei Tang, Chen Chen, Qihao Chai, Zhenmei Yang, Jing Zhang, Xiaotian Zhao, Hailun Xu, Maosen Han, Yan Wang, Ziyang Liao, Gongchang Yu, Bin Shi, Kun Zhao, Wei Li, Xinyi Jiang
Tracking and eradicating Staphylococcus aureus in the periprosthetic microenvironment are critical for preventing periprosthetic joint infection (PJI), yet effective strategies remain elusive. Here, we report an implant nanoparticle coating that locoregionally yields bactericidal super chimeric antigen receptor macrophages (CAR-MΦs) to prevent PJI. We demonstrate that the plasmid-laden nanoparticle
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PAXX binding to the NHEJ machinery explains functional redundancy with XLF Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Murielle Seif-El-Dahan, Antonia Kefala-Stavridi, Philippe Frit, Steven W. Hardwick, Dima Y. Chirgadze, Taiana Maia De Oliviera, Sébastien Britton, Nadia Barboule, Madeleine Bossaert, Arun Prasad Pandurangan, Katheryn Meek, Tom L. Blundell, Virginie Ropars, Patrick Calsou, Jean-Baptiste Charbonnier, Amanda K. Chaplin
Nonhomologous end joining is a critical mechanism that repairs DNA double-strand breaks in human cells. In this work, we address the structural and functional role of the accessory protein PAXX [paralog of x-ray repair cross-complementing protein 4 (XRCC4) and XRCC4-like factor (XLF)] in this mechanism. Here, we report high-resolution cryo–electron microscopy (cryo-EM) and x-ray crystallography structures
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Seismic evidence for global basalt accumulation in the mantle transition zone Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Chunquan Yu, Saskia Goes, Elizabeth A. Day, Robert D. van der Hilst
The mantle’s compositional structure reflects the thermochemical evolution of Earth. Yet, even the radial average composition of the mantle remains debated. Here, we analyze a global dataset of shear and compressional waves reflecting off the 410- and 660-km discontinuities that is 10 times larger than any previous studies. Our array analysis retrieves globally averaged amplitude-distance trends in
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FIRRM/C1orf112 mediates resolution of homologous recombination intermediates in response to DNA interstrand crosslinks Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Abdelghani Mazouzi, Sarah C. Moser, Federico Abascal, Bram van den Broek, Martin Del Castillo Velasco-Herrera, Ingrid van der Heijden, Maarten Hekkelman, Anne Paulien Drenth, Eline van der Burg, Lona J. Kroese, Kees Jalink, David J. Adams, Jos Jonkers, Thijn R. Brummelkamp
DNA interstrand crosslinks (ICLs) pose a major obstacle for DNA replication and transcription if left unrepaired. The cellular response to ICLs requires the coordination of various DNA repair mechanisms. Homologous recombination (HR) intermediates generated in response to ICLs, require efficient and timely conversion by structure-selective endonucleases. Our knowledge on the precise coordination of
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The largest fully protected marine area in North America does not harm industrial fishing Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Fabio Favoretto, Catalina López-Sagástegui, Enric Sala, Octavio Aburto-Oropeza
Marine protected areas (MPAs) that ban fishing restore marine life within their boundaries and can also replenish nearby fisheries. However, some argue that after large MPAs are established, fishing effort is displaced to unprotected areas and economic loss is incurred by the fishing industry. We tested these assumptions by assessing the behavior and productivity of the Mexican industrial fishing fleet
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Extensive programmed centriole elimination unveiled in C. elegans embryos Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Nils Kalbfuss, Pierre Gönczy
Centrioles are critical for fundamental cellular processes, including signaling, motility, and division. The extent to which centrioles are present after cell cycle exit in a developing organism is not known. The stereotypical lineage of Caenorhabditis elegans makes it uniquely well-suited to investigate this question. Using notably lattice light-sheet microscopy, correlative light electron microscopy
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Jaynes-Cummings interaction between low-energy free electrons and cavity photons Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Aviv Karnieli, Shanhui Fan
The Jaynes-Cummings Hamiltonian is at the core of cavity quantum electrodynamics; however, it relies on bound-electron emitters fundamentally limited by the binding Coulomb potential. In this work, we propose theoretically a new approach to realizing the Jaynes-Cummings model using low-energy free electrons coupled to dielectric microcavities and exemplify several quantum technologies made possible
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Fast volumetric ultrasound facilitates high-resolution 3D mapping of tissue compartments Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Eun-Yeong Park, Xiran Cai, Josquin Foiret, Hanna Bendjador, Dongwoon Hyun, Brett Z. Fite, Robert Wodnicki, Jeremy J. Dahl, Robert D. Boutin, Katherine W. Ferrara
Volumetric ultrasound imaging has the potential for operator-independent acquisition and enhanced field of view. Panoramic acquisition has many applications across ultrasound; spanning musculoskeletal, liver, breast, and pediatric imaging; and image-guided therapy. Challenges in high-resolution human imaging, such as subtle motion and the presence of bone or gas, have limited such acquisition. These
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Processing of methane and acetylene ices by galactic cosmic rays and implications to the color diversity of Kuiper Belt objects Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Chaojiang Zhang, Cheng Zhu, Andrew M. Turner, Ivan O. Antonov, Adrien D. Garcia, Cornelia Meinert, Leslie A. Young, David C. Jewitt, Ralf I. Kaiser
Kuiper Belt objects exhibit a wider color range than any other solar system population. The origin of this color diversity is unknown, but likely the result of the prolonged irradiation of organic materials by galactic cosmic rays (GCRs). Here, we combine ultrahigh-vacuum irradiation experiments with comprehensive spectroscopic analyses to examine the color evolution during GCR processing methane and
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Aryl hydrocarbon receptor is a proviral host factor and a candidate pan-SARS-CoV-2 therapeutic target Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Jiandong Shi, Tingfu Du, Junbin Wang, Cong Tang, Mengyue Lei, Wenhai Yu, Yun Yang, Ying Ma, Pu Huang, Hongli Chen, Xu Wang, Jing Sun, Haixuan Wang, Yong Zhang, Fangyu Luo, Qing Huang, Bai Li, Shuaiyao Lu, Yunzhang Hu, Xiaozhong Peng
The emergence of a series of SARS-CoV-2 variants has necessitated the search for broad-spectrum antiviral targets. The aryl hydrocarbon receptor (AhR) senses tryptophan metabolites and is an immune regulator. However, the role of AhR in SARS-CoV-2 infection and whether AhR can be used as the target of antiviral therapy against SARS-CoV-2 and its variants are yet unclear. Here, we show that infection
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Fear extinction relies on ventral hippocampal safety codes shaped by the amygdala Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Robin Nguyen, Konstantinos Koukoutselos, Thomas Forro, Stéphane Ciocchi
Extinction memory retrieval is influenced by spatial contextual information that determines responding to conditioned stimuli (CS). However, it is poorly understood whether contextual representations are imbued with emotional values to support memory selection. Here, we performed activity-dependent engram tagging and in vivo single-unit electrophysiological recordings from the ventral hippocampus (vH)
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Nonlinear two-photon pumped vortex lasing based on quasi-bound states in the continuum from perovskite metasurface Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Chi-Ching Liu, Hui-Hsin Hsiao, Yun-Chorng Chang
The experimental observation of nonlinear two-photon pumped vortex lasing from perovskite metasurfaces is demonstrated. The vortex lasing beam is based on symmetry-protected quasi-bound states in the continuum (QBICs). The topological charge is estimated to be +1 according to the simulation result. The quality factor and lasing threshold are around 1100 and 4.28 mJ/cm 2 , respectively. Theoretical
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Buffering of genetic dominance by allele-specific protein complex assembly Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Mihaly Badonyi, Joseph A Marsh
Protein complex assembly often occurs while subunits are being translated, resulting in complexes whose subunits were translated from the same mRNA in an allele-specific manner. It has thus been hypothesized that such cotranslational assembly may counter the assembly-mediated dominant-negative effect, whereby co-assembly of mutant and wild-type subunits “poisons” complex activity. Here, we show that
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Fluorescent-based biodegradable microneedle sensor array for tether-free continuous glucose monitoring with smartphone application Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Mingyu Sang, Myeongki Cho, Selin Lim, In Sik Min, Yuna Han, Chanwoo Lee, Jongwoon Shin, Kukro Yoon, Woon-Hong Yeo, Taeyoon Lee, Sang Min Won, Youngmee Jung, Yun Jung Heo, Ki Jun Yu
Continuous glucose monitoring (CGM) allows patients with diabetes to manage critical disease effectively and autonomously and prevent exacerbation. A painless, wireless, compact, and minimally invasive device that can provide CGM is essential for monitoring the health conditions of freely moving patients with diabetes. Here, we propose a glucose-responsive fluorescence-based highly sensitive biodegradable
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Cryo-EM visualization of DNA-PKcs structural intermediates in NHEJ Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Siyu Chen, Alex Vogt, Linda Lee, Tasmin Naila, Ryan McKeown, Alan E Tomkinson, Susan P Lees-Miller, Yuan He
DNA double-strand breaks (DSBs), one of the most cytotoxic forms of DNA damage, can be repaired by the tightly regulated nonhomologous end joining (NHEJ) machinery (Stinson and Loparo and Zhao et al. ). Core NHEJ factors form an initial long-range (LR) synaptic complex that transitions into a DNA-PKcs (DNA-dependent protein kinase, catalytic subunit)–free, short-range state to align the DSB ends (Chen
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Distinct armchair and zigzag charge transport through single polycyclic aromatics Sci. Adv. (IF 14.957) Pub Date : 2023-05-31 Miao Zhang, Zewen Wu, Hongxing Jia, Peihui Li, Lei Yang, Jie Hao, Jinying Wang, Enyu Zhang, Linan Meng, Zhuang Yan, Yi Liu, Pingwu Du, Xianghua Kong, Shengxiong Xiao, Chuancheng Jia, Xuefeng Guo
In aromatic systems with large π-conjugated structures, armchair and zigzag configurations can affect each material’s electronic properties, determining their performance and generating certain quantum effects. Here, we explore the intrinsic effect of armchair and zigzag pathways on charge transport through single hexabenzocoronene molecules. Theoretical calculations and systematic experimental results
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Transformation of arginine into zero-dimensional nanomaterial endows the material with antibacterial and osteoinductive activity Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Jiaying Li, Jinjin Ma, Heng Sun, Meizhe Yu, Huan Wang, Qingchen Meng, Zexi Li, Dachuan Liu, Jianzhong Bai, Guoping Liu, Xiaodong Xing, Fengxuan Han, Bin Li
Implant-associated infection is a major threat affecting the success of orthopedic surgeries. Although various materials scavenge bacteria by generating reactive oxygen species (ROS), the intrinsic inability of ROS to distinguish bacteria from cells notably limits the therapeutic effects. Here, we found that the arginine carbon dots (Arg-CDs) that were transformed from arginine exhibited supreme antibacterial
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Secreted endogenous macrosomes reduce Aβ burden and ameliorate Alzheimer’s disease Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Cunli Wang, Yiming Yang, Xiaoyu Zhang, Zhenqiang Shi, Huiling Gao, Manli Zhong, Yonggang Fan, Hongyan Zhang, Bo Liu, Guangyan Qing
Innovative therapeutic strategies are urgently needed for Alzheimer’s disease (AD) due to the increasing size of the aging population and the lack of effective drug treatment. Here, we report the therapeutic effects of extracellular vesicles (EVs) secreted by microglia, including macrosomes and small EVs, on AD-associated pathology. Macrosomes strongly inhibited β-amyloid (Aβ) aggregation and rescued
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Microglia mediate neurocognitive deficits by eliminating C1q-tagged synapses in sepsis-associated encephalopathy Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Ha-Yeun Chung, Jonathan Wickel, Nina Hahn, Nils Mein, Meike Schwarzbrunn, Philipp Koch, Mihai Ceanga, Holger Haselmann, Carolin Baade-Büttner, Nikolai von Stackelberg, Nina Hempel, Lars Schmidl, Marco Groth, Nico Andreas, Juliane Götze, Sina M. Coldewey, Michael Bauer, Christian Mawrin, Justina Dargvainiene, Frank Leypoldt, Stephan Steinke, Zhao-Qi Wang, Michael Hust, Christian Geis
Sepsis-associated encephalopathy (SAE) is a severe and frequent complication of sepsis causing delirium, coma, and long-term cognitive dysfunction. We identified microglia and C1q complement activation in hippocampal autopsy tissue of patients with sepsis and increased C1q-mediated synaptic pruning in a murine polymicrobial sepsis model. Unbiased transcriptomics of hippocampal tissue and isolated microglia
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LOXL4, but not LOXL2, is the critical determinant of pathological collagen cross-linking and fibrosis in the lung Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Hsiao-Yen Ma, Qingling Li, Weng Ruh Wong, Elsa-Noah N’Diaye, Patrick Caplazi, Hannah Bender, Zhiyu Huang, Alexander Arlantico, Surinder Jeet, Aaron Wong, Claire Emson, Hans Brightbill, Lucinda Tam, Robert Newman, Merone Roose-Girma, Wendy Sandoval, Ning Ding
Idiopathic pulmonary fibrosis is a progressive fibrotic disease characterized by excessive deposition of (myo)fibroblast produced collagen fibrils in alveolar areas of the lung. Lysyl oxidases (LOXs) have been proposed to be the central enzymes that catalyze the cross-linking of collagen fibers. Here, we report that, while its expression is increased in fibrotic lungs, genetic ablation of LOXL2 only
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Large diurnal compensatory effects mitigate the response of Amazonian forests to atmospheric warming and drying Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Zhaoying Zhang, Alessandro Cescatti, Ying-Ping Wang, Pierre Gentine, Jingfeng Xiao, Luis Guanter, Alfredo R. Huete, Jin Wu, Jing M. Chen, Weimin Ju, Josep Peñuelas, Yongguang Zhang
Photosynthesis and evapotranspiration in Amazonian forests are major contributors to the global carbon and water cycles. However, their diurnal patterns and responses to atmospheric warming and drying at regional scale remain unclear, hindering the understanding of global carbon and water cycles. Here, we used proxies of photosynthesis and evapotranspiration from the International Space Station to
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PD-L1 methylation restricts PD-L1/PD-1 interactions to control cancer immune surveillance Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Changsheng Huang, Shengxiang Ren, Yaqi Chen, Anyi Liu, Qi Wu, Tao Jiang, Panjing Lv, Da Song, Fuqing Hu, Jingqing Lan, Li Sun, Xue Zheng, Xuelai Luo, Qian Chu, Keyi Jia, Yan Li, Jun Wang, Caicun Zou, Junbo Hu, Guihua Wang
Immune checkpoint inhibitors targeting programmed cell death protein 1 (PD-1) or programmed cell death 1 ligand 1 (PD-L1) have enabled some patients with cancer to experience durable, complete treatment responses; however, reliable anti–PD-(L)1 treatment response biomarkers are lacking. Our research found that PD-L1 K162 was methylated by SETD7 and demethylated by LSD2. Furthermore, PD-L1 K162 methylation
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CAGE sequencing reveals CFTR-dependent dysregulation of type I IFN signaling in activated cystic fibrosis macrophages Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Jonathan L. Gillan, Mithil Chokshi, Gareth R. Hardisty, Sara Clohisey Hendry, Daniel Prasca-Chamorro, Nicola J. Robinson, Benjamin Lasota, Richard Clark, Lee Murphy, Moira K. B. Whyte, J. Kenneth Baillie, Donald J. Davidson, Gang Bao, Robert D. Gray
An intense, nonresolving airway inflammatory response leads to destructive lung disease in cystic fibrosis (CF). Dysregulation of macrophage immune function may be a key facet governing the progression of CF lung disease, but the underlying mechanisms are not fully understood. We used 5′ end centered transcriptome sequencing to profile P. aeruginosa LPS-activated human CF macrophages, showing that
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Super-compact universal quantum logic gates with inverse-designed elements Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Lu He, Dongning Liu, Jingxing Gao, Weixuan Zhang, Huizhen Zhang, Xue Feng, Yidong Huang, Kaiyu Cui, Fang Liu, Wei Zhang, Xiangdong Zhang
Integrated quantum photonic circuit is a promising platform for the realization of quantum information processing in the future. To achieve the large-scale quantum photonic circuits, the applied quantum logic gates should be as small as possible for the high-density integration on chips. Here, we report the implementation of super-compact universal quantum logic gates on silicon chips by the method
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Mechanism of structural colors in binary mixtures of nanoparticle-based supraballs Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Christian M. Heil, Anvay Patil, Bram Vanthournout, Saranshu Singla, Markus Bleuel, Jing-Jin Song, Ziying Hu, Nathan C. Gianneschi, Matthew D. Shawkey, Sunil K. Sinha, Arthi Jayaraman, Ali Dhinojwala
Inspired by structural colors in avian species, various synthetic strategies have been developed to produce noniridescent, saturated colors using nanoparticle assemblies. Nanoparticle mixtures varying in particle chemistry and size have additional emergent properties that affect the color produced. For complex multicomponent systems, understanding the assembled structure and a robust optical modeling
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Oral polyphenol-armored nanomedicine for targeted modulation of gut microbiota–brain interactions in colitis Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Huan He, Qiaozhen Qin, Fang Xu, Yitong Chen, Shuquan Rao, Chao Wang, Xiaoxia Jiang, Xiong Lu, Chaoming Xie
Developing oral nanomedicines that suppress intestinal inflammation while modulating gut microbiota and brain interactions is essential for effectively treating inflammatory bowel disease. Here, we report an oral polyphenol-armored nanomedicine based on tumor necrosis factor–α (TNF-α)–small interfering RNA and gallic acid–mediated graphene quantum dot (GAGQD)–encapsulated bovine serum albumin nanoparticle
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Use of race in clinical algorithms Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Anirban Basu
To answer whether patients’ race belongs in clinical prediction algorithms, two types of prediction models are considered: (i) diagnostic, which describes a patient’s clinical characteristics, and (ii) prognostic, which forecasts a clinical risk or treatment effect that a patient is likely to experience in the future. The ex ante equality of opportunity framework is used, where specific health outcomes
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A noncommutative combinatorial protein logic circuit controls cell orientation in nanoenvironments Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Jiaxing Chen, Yashavantha L. Vishweshwaraiah, Richard B. Mailman, Erdem D. Tabdanov, Nikolay V. Dokholyan
Single-protein–based devices that integrate signal sensing with logical operations to generate functional outputs offer exceptional promise for monitoring and modulating biological systems. Engineering such intelligent nanoscale computing agents is challenging, as it requires the integration of sensor domains into a functional protein via intricate allosteric networks. We incorporate a rapamycin-sensitive
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Global analysis of the yeast knockout phenome Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Gina Turco, Christie Chang, Rebecca Y. Wang, Griffin Kim, Emily H. Stoops, Brianna Richardson, Vanessa Sochat, Jennifer Rust, Rose Oughtred, Nathaniel Thayer, Fan Kang, Michael S. Livstone, Sven Heinicke, Mark Schroeder, Kara J. Dolinski, David Botstein, Anastasia Baryshnikova
Genome-wide phenotypic screens in the budding yeast Saccharomyces cerevisiae , enabled by its knockout collection, have produced the largest, richest, and most systematic phenotypic description of any organism. However, integrative analyses of this rich data source have been virtually impossible because of the lack of a central data repository and consistent metadata annotations. Here, we describe
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Cellular-scale proximity labeling for recording cell spatial organization in mouse tissues Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Xu Zhang, Qi Tang, Jiayu Sun, Yilan Guo, Shaoran Zhang, Shuyu Liang, Peng Dai, Xing Chen
Proximity labeling has emerged as a powerful strategy for interrogating cell-cell interactions. However, the nanometer-scale labeling radius impedes the use of current methods for indirect cell communications and makes recording cell spatial organization in tissue samples difficult. Here, we develop quinone methide–assisted identification of cell spatial organization (QMID), a chemical strategy with
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LIKE EARLY STARVATION 1 and EARLY STARVATION 1 promote and stabilize amylopectin phase transition in starch biosynthesis Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Chun Liu, Barbara Pfister, Rayan Osman, Maximilian Ritter, Arvid Heutinck, Mayank Sharma, Simona Eicke, Michaela Fischer-Stettler, David Seung, Coralie Bompard, Melanie R. Abt, Samuel C. Zeeman
Starch, the most abundant carbohydrate reserve in plants, primarily consists of the branched glucan amylopectin, which forms semi-crystalline granules. Phase transition from a soluble to an insoluble form depends on amylopectin architecture, requiring a compatible distribution of glucan chain lengths and a branch-point distribution. Here, we show that two starch-bound proteins, LIKE EARLY STARVATION
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Nitric oxide synthase and reduced arterial tone contribute to arteriovenous malformation Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Lawrence Huang, Feng Cheng, Xuetao Zhang, Jacek Zielonka, Matthew A. Nystoriak, Weiwei Xiang, Kunal Raygor, Shaoxun Wang, Aditya Lakshmanan, Weiya Jiang, Sai Yuan, Kevin S. Hou, Jiayi Zhang, Xitao Wang, Arsalan U. Syed, Matea Juric, Takamune Takahashi, Manuel F. Navedo, Rong A. Wang
Mechanisms underlying arteriovenous malformations (AVMs) are poorly understood. Using mice with endothelial cell (EC) expression of constitutively active Notch4 (Notch4* EC ), we show decreased arteriolar tone in vivo during brain AVM initiation. Reduced vascular tone is a primary effect of Notch4* EC , as isolated pial arteries from asymptomatic mice exhibited reduced pressure-induced arterial tone
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Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Krzysztof T. Jurdzinski, Maliheh Mehrshad, Luis Fernando Delgado, Ziling Deng, Stefan Bertilsson, Anders F. Andersson
The crossing of environmental barriers poses major adaptive challenges. Rareness of freshwater-marine transitions separates the bacterial communities, but how these are related to brackish counterparts remains elusive, as do the molecular adaptations facilitating cross-biome transitions. We conducted large-scale phylogenomic analysis of freshwater, brackish, and marine quality-filtered metagenome-assembled
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Retarding solid-state reactions enable efficient and stable all-inorganic perovskite solar cells and modules Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Cheng Liu, Xiuhong Sun, Yi Yang, Olga A. Syzgantseva, Maria A. Syzgantseva, Bin Ding, Naoyuki Shibayama, Hiroyuki Kanda, Farzaneh Fadaei Tirani, Rosario Scopelliti, Shunlin Zhang, Keith G. Brooks, Songyuan Dai, Guanglei Cui, Michael D. Irwin, Zhipeng Shao, Yong Ding, Zhaofu Fei, Paul J. Dyson, Mohammad Khaja Nazeeruddin
All-inorganic CsPbI 3 perovskite solar cells (PSCs) with efficiencies exceeding 20% are ideal candidates for application in large-scale tandem solar cells. However, there are still two major obstacles hindering their scale-up: (i) the inhomogeneous solid-state synthesis process and (ii) the inferior stability of the photoactive CsPbI 3 black phase. Here, we have used a thermally stable ionic liquid
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Increased 3- O -sulfated heparan sulfate in Alzheimer’s disease brain is associated with genetic risk gene HS3ST1 Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Zhangjie Wang, Vaishali N. Patel, Xuehong Song, Yongmei Xu, Andrea M. Kaminski, Vivien Uyen Doan, Guowei Su, Yien Liao, Dylan Mah, Fuming Zhang, Vijayakanth Pagadala, Chunyu Wang, Lars C. Pedersen, Lianchun Wang, Matthew P. Hoffman, Marla Gearing, Jian Liu
HS3ST1 is a genetic risk gene associated with Alzheimer’s disease (AD) and overexpressed in patients, but how it contributes to the disease progression is unknown. We report the analysis of brain heparan sulfate (HS) from AD and other tauopathies using a LC-MS/MS method. A specific 3- O -sulfated HS displayed sevenfold increase in the AD group ( n = 14, P < 0.0005). Analysis of the HS modified by recombinant
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Miniature color camera via flat hybrid meta-optics Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Samuel Pinilla, Johannes E. Fröch, Seyyed Reza Miri Rostami, Vladimir Katkovnik, Igor Shevkunov, Arka Majumdar, Karen Egiazarian
The race for miniature color cameras using flat meta-optics has rapidly developed the end-to-end design framework using neural networks. Although a large body of work has shown the potential of this methodology, the reported performance is still limited due to fundamental limitations coming from meta-optics, mismatch between simulated and resultant experimental point spread functions, and calibration
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Functional binding of PD1 ligands predicts response to anti-PD1 treatment in patients with cancer Sci. Adv. (IF 14.957) Pub Date : 2023-05-26 Bar Kaufman, Orli Abramov, Anna Ievko, Daria Apple, Mark Shlapobersky, Irit Allon, Yariv Greenshpan, Baisali Bhattachrya, Ofir Cohen, Tatiana Charkovsky, Alexandra Gayster, Ruthy Shaco-Levy, Keren Rouvinov, Alejandro Livoff, Moshe Elkabets, Angel Porgador
Accurate predictive biomarkers of response to immune checkpoint inhibitors (ICIs) are required for better stratifying patients with cancer to ICI treatments. Here, we present a new concept for a bioassay to predict the response to anti-PD1 therapies, which is based on measuring the binding functionality of PDL1 and PDL2 to their receptor, PD1. In detail, we developed a cell-based reporting system,
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Efficient deep-blue luminescence based on dual-channel intra/intermolecular exciplexes Sci. Adv. (IF 14.957) Pub Date : 2023-05-25 Zhen Zhang, Dehai Dou, Rongrong Xia, Peng Wu, Eduard Spuling, Ke Wang, Jin Cao, Bin Wei, Xifeng Li, Jianhua Zhang, Stefan Bräse, Zixing Wang
Highly efficient and stable blue organic light-emitting diodes (OLEDs) cannot be easily obtained simultaneously. In particular, the efficiency roll-off as a reference index to evaluate the lifetime of deep-blue OLED at high luminescence is still severe. A novel molecule ( CzSiTrz ) connected with carbazole and triazine fragments by a nonconjugated silicon atom is designed. An intramolecular charge
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Proton-mediated reversible switching of metastable ferroelectric phases with low operation voltages Sci. Adv. (IF 14.957) Pub Date : 2023-05-24 Xin He, Yinchang Ma, Chenhui Zhang, Aiping Fu, Weijin Hu, Yang Xu, Bin Yu, Kai Liu, Hua Wang, Xixiang Zhang, Fei Xue
The exploration of ferroelectric phase transitions enables an in-depth understanding of ferroelectric switching and promising applications in information storage. However, controllably tuning the dynamics of ferroelectric phase transitions remains challenging owing to inaccessible hidden phases. Here, using protonic gating technology, we create a series of metastable ferroelectric phases and demonstrate
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Living microecological hydrogels for wound healing Sci. Adv. (IF 14.957) Pub Date : 2023-05-24 Guopu Chen, Fengyuan Wang, Xiaoxuan Zhang, Yixuan Shang, Yuanjin Zhao
Chronic hard-to-heal wounds draw great attention worldwide, as their treatments are limited by infections and hypoxia. Inspired by the natural oxygen production capacity of algae and the competitive advantage of beneficial bacteria over other microbes, we presented a living microecological hydrogel (LMH) with functionalized Chlorella and Bacillus subtilis encapsulation to realize continuous oxygen
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Transcriptomics reveals amygdala neuron regulation by fasting and ghrelin thereby promoting feeding Sci. Adv. (IF 14.957) Pub Date : 2023-05-24 Christian Peters, Songwei He, Federica Fermani, Hansol Lim, Wenyu Ding, Christian Mayer, Rüdiger Klein
The central amygdala (CeA) consists of numerous genetically defined inhibitory neurons that control defensive and appetitive behaviors including feeding. Transcriptomic signatures of cell types and their links to function remain poorly understood. Using single-nucleus RNA sequencing, we describe nine CeA cell clusters, of which four are mostly associated with appetitive and two with aversive behaviors
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Higher depression risks in medium- than in high-density urban form across Denmark Sci. Adv. (IF 14.957) Pub Date : 2023-05-24 Tzu-Hsin Karen Chen, Henriette Thisted Horsdal, Karl Samuelsson, Ane Marie Closter, Megan Davies, Stephan Barthel, Carsten Bøcker Pedersen, Alexander V. Prishchepov, Clive E. Sabel
Urban areas are associated with higher depression risks than rural areas. However, less is known about how different types of urban environments relate to depression risk. Here, we use satellite imagery and machine learning to quantify three-dimensional (3D) urban form (i.e., building density and height) over time. Combining satellite-derived urban form data and individual-level residential addresses
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Mitophagy restricts BAX/BAK-independent, Parkin-mediated apoptosis Sci. Adv. (IF 14.957) Pub Date : 2023-05-24 Giovanni Quarato, Luigi Mari, Nicholas J. Barrows, Mao Yang, Sebastian Ruehl, Mark J. Chen, Cliff S. Guy, Jonathan Low, Taosheng Chen, Douglas R. Green
Degradation of defective mitochondria is an essential process to maintain cellular homeostasis and it is strictly regulated by the ubiquitin-proteasome system (UPS) and lysosomal activities. Here, using genome-wide CRISPR and small interference RNA screens, we identified a critical contribution of the lysosomal system in controlling aberrant induction of apoptosis following mitochondrial damage. After
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Proteomic identification of beer brewing products in the ground layer of Danish Golden Age paintings Sci. Adv. (IF 14.957) Pub Date : 2023-05-24 Fabiana Di Gianvincenzo, Cecil Krarup Andersen, Troels Filtenborg, Meaghan Mackie, Madeleine Ernst, Jazmín Ramos Madrigal, Jesper V. Olsen, Jørgen Wadum, Enrico Cappellini
The application of mass spectrometry–based proteomics to artworks provides accurate and detailed characterization of protein-based materials used in their production. This is highly valuable to plan conservation strategies and reconstruct the artwork’s history. In this work, the proteomic analysis of canvas paintings from the Danish Golden Age led to the confident identification of cereal and yeast
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Peptidomimetic antibiotics disrupt the lipopolysaccharide transport bridge of drug-resistant Enterobacteriaceae Sci. Adv. (IF 14.957) Pub Date : 2023-05-24 Matthias Schuster, Emile Brabet, Kathryn K. Oi, Nicolas Desjonquères, Kerstin Moehle, Karen Le Poupon, Sophie Hell, Stéphane Gable, Virginie Rithié, Séverine Dillinger, Peter Zbinden, Anatol Luther, Claudia Li, Sarah Stiegeler, Carolin D’Arco, Hans Locher, Tobias Remus, Selena DiMaio, Paola Motta, Achim Wach, Françoise Jung, Grégory Upert, Daniel Obrecht, Mohammed Benghezal, Oliver Zerbe
The rise of antimicrobial resistance poses a substantial threat to our health system, and, hence, development of drugs against novel targets is urgently needed. The natural peptide thanatin kills Gram-negative bacteria by targeting proteins of the lipopolysaccharide transport (Lpt) machinery. Using the thanatin scaffold together with phenotypic medicinal chemistry, structural data, and a target-focused
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Cryo-EM analysis of scorpion toxin binding to Ryanodine Receptors reveals subconductance that is abolished by PKA phosphorylation Sci. Adv. (IF 14.957) Pub Date : 2023-05-24 Omid Haji-Ghassemi, Yu Seby Chen, Kellie Woll, Georgina B. Gurrola, Carmen R. Valdivia, Wenxuan Cai, Songhua Li, Hector H. Valdivia, Filip Van Petegem
Calcins are peptides from scorpion venom with the unique ability to cross cell membranes, gaining access to intracellular targets. Ryanodine Receptors (RyR) are intracellular ion channels that control release of Ca 2+ from the endoplasmic and sarcoplasmic reticulum. Calcins target RyRs and induce long-lived subconductance states, whereby single-channel currents are decreased. We used cryo–electron
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TrpA1 is a shear stress mechanosensing channel regulating intestinal stem cell proliferation in Drosophila Sci. Adv. (IF 14.957) Pub Date : 2023-05-24 Jiaxin Gong, Niraj K. Nirala, Jiazhang Chen, Fei Wang, Pengyu Gu, Qi Wen, Y. Tony Ip, Yang Xiang
Adult stem cells are essential for tissue maintenance and repair. Although genetic pathways for controlling adult stem cells are extensively investigated in various tissues, much less is known about how mechanosensing could regulate adult stem cells and tissue growth. Here, we demonstrate that shear stress sensing regulates intestine stem cell proliferation and epithelial cell number in adult Drosophila
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Paleomagnetic evidence for a long-lived, potentially reversing martian dynamo at ~3.9 Ga Sci. Adv. (IF 14.957) Pub Date : 2023-05-24 Sarah C. Steele, Roger R. Fu, Michael W. R. Volk, Thomas L. North, Alec R. Brenner, Adrian R. Muxworthy, Gareth S. Collins, Thomas M. Davison
The 4.1-billion-year-old meteorite Allan Hills 84001 (ALH 84001) may preserve a magnetic record of the extinct martian dynamo. However, previous paleomagnetic studies have reported heterogeneous, nonunidirectional magnetization in the meteorite at submillimeter scales, calling into question whether it records a dynamo field. We use the quantum diamond microscope to analyze igneous Fe-sulfides in ALH
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Multiomic signals associated with maternal epidemiological factors contributing to preterm birth in low- and middle-income countries Sci. Adv. (IF 14.957) Pub Date : 2023-05-24 Camilo A. Espinosa, Waqasuddin Khan, Rasheda Khanam, Sayan Das, Javairia Khalid, Jesmin Pervin, Margaret P. Kasaro, Kévin Contrepois, Alan L. Chang, Thanaphong Phongpreecha, Basil Michael, Mathew Ellenberger, Usma Mehmood, Aneeta Hotwani, Ambreen Nizar, Furqan Kabir, Ronald J. Wong, Martin Becker, Eloise Berson, Anthony Culos, Davide De Francesco, Samson Mataraso, Neal Ravindra, Melan Thuraiappah,
Preterm birth (PTB) is the leading cause of death in children under five, yet comprehensive studies are hindered by its multiple complex etiologies. Epidemiological associations between PTB and maternal characteristics have been previously described. This work used multiomic profiling and multivariate modeling to investigate the biological signatures of these characteristics. Maternal covariates were
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Environment-dependent epistasis increases phenotypic diversity in gene regulatory networks Sci. Adv. (IF 14.957) Pub Date : 2023-05-24 Florian Baier, Florence Gauye, Ruben Perez-Carrasco, Joshua L. Payne, Yolanda Schaerli
Mutations to gene regulatory networks can be maladaptive or a source of evolutionary novelty. Epistasis confounds our understanding of how mutations affect the expression patterns of gene regulatory networks, a challenge exacerbated by the dependence of epistasis on the environment. We used the toolkit of synthetic biology to systematically assay the effects of pairwise and triplet combinations of