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From AI to the Y chromosome (and everything in between) Nat. Biotechnol. (IF 46.9) Pub Date : 2023-12-04
Nature Biotechnology editors pick their favorite research articles from 2023.
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Nature Biotechnology’s academic spinouts 2022 Nat. Biotechnol. (IF 46.9) Pub Date : 2023-12-04
Nature Biotechnology’s annual survey highlights academic start ups that are, among other things, correcting misfolded or disordered proteins, creating second-generation GPCR agonists, building a new gene delivery platform and mining cancer genomes for novel targets.
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Tracing the fate of AAV vectors in the body Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-27 Nerea Zabaleta, Irene Gil-Farina
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Top ten news stories in 2023 Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-27
Our ranking is out, and it has a few surprises. In pole position — predictably — is Wegovy, the weight-slashing GLP-1 agonist, with AI-hallucinated proteins a close second. These are followed by drugging options for RNA. The dark horses are virus-free gene therapies and a sweet protein.
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Encapsulated stem cell–derived β cells exert glucose control in patients with type 1 diabetes Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-27 Bart Keymeulen, Kaat De Groot, Daniel Jacobs-Tulleneers-Thevissen, David M. Thompson, Melena D. Bellin, Evert J. Kroon, Mark Daniels, Richard Wang, Manasi Jaiman, Timothy J. Kieffer, Howard L. Foyt, Daniel Pipeleers
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The world’s first CRISPR therapy is approved: who will receive it? Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-21
The go-ahead for Vertex’s gene editing therapy in sickle cell disease and β-thalassemia is a historic milestone, but this one-time treatment is costly.
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Spatial metatranscriptomics resolves host–bacteria–fungi interactomes Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-20 Sami Saarenpää, Or Shalev, Haim Ashkenazy, Vanessa Carlos, Derek Severi Lundberg, Detlef Weigel, Stefania Giacomello
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Spatial methods for microbiome–host interactions Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-20 Ioannis Ntekas, Iwijn De Vlaminck
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Spatial host–microbiome sequencing reveals niches in the mouse gut Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-20 Britta Lötstedt, Martin Stražar, Ramnik Xavier, Aviv Regev, Sanja Vickovic
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Modeling human trunk development Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-16 Yuchuan Miao, Olivier Pourquié
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Antibiotic nanoparticles boost antitumor immunity Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-16 Kai Han, Young Seok Cho, James J. Moon
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Generation of locus coeruleus norepinephrine neurons from human pluripotent stem cells Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-16 Yunlong Tao, Xueyan Li, Qiping Dong, Linghai Kong, Andrew J. Petersen, Yuanwei Yan, Ke Xu, Seth Zima, Yanru Li, Danielle K. Schmidt, Melvin Ayala, Sakthikumar Mathivanan, Andre M. M. Sousa, Qiang Chang, Su-Chun Zhang
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Brain imaging turned inside out Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-13 Shahrzad Askari, Thomas Misgeld
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A bacterial assist for CAR-T cells Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-10 Kathryn Aschheim
Cancer therapy with chimeric antigen receptor (CAR)-T cells has achieved impressive remissions in certain hematologic malignancies, and extending the approach to other types of cancer is a key goal of immunotherapy research. Solid tumors have proved particularly challenging because of immunosuppressive mechanisms in the tumor microenvironment. Writing in Science, Danino and colleagues outline a new
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Precise intraoperative brain tumor classification Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-10 Rong Li
Central nervous system (CNS) tumors are a leading cause of cancer-related deaths, particularly among children, and the primary treatment is neurosurgical resection. Precisely identifying the tumor type is crucial for developing an effective surgical plan. However, the current methods of histological assessment and molecular analysis face challenges in providing a clear diagnosis during surgery. In
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Antibody engineering Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-10
Recent patents relating to the manufacture and design of engineered immunoglobulin polypeptides.
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NKs for lupus poised for trial Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-10
Nkarta is charting a course for its allogeneic chimeric antigen receptor (CAR) natural killer cell (NK) therapy in autoimmune lupus nephritis after receiving approval from the US Food and Drug Administration (FDA) to test NKX019. The cell therapy specialist becomes the second to get FDA go-ahead for an NK product in a chronic autoimmune disease, following Artiva Biotherapeutics’ AlloNK. In August 2023
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Chan Zuckerberg hubs multiply Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-10
In October, the Chan Zuckerberg Initiative (CZI) launched two new biohubs: one in New York and another in Chicago. The biohubs will bring together academic researchers at leading institutions to solve scientific challenges that could result in better prevention, detection and treatment of disease. The CZ Biohub NY received, in addition to undisclosed CZI support, $10 million each from the State of
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Most effective malaria vaccine yet Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-10
A new malaria vaccine for children is the first to meet the World Health Organization’s (WHO) 75% protection target. The vaccine, called R21 and developed and produced by Oxford University and the Serum Institute of India, is the second recommended by the WHO. The first was Mosquirix (RTS,S/AS01) made by London-based GlaxoSmithKline (GSK), which is 50% protective. At $3.90 per dose, R21 is cheaper
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Gene therapy for walking recovery after paralysis Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-10 Alexandra Despang
Despite the longstanding goal of reestablishing walking after spinal cord injury (SCI), existing strategies for axonal regeneration do not fully restore motor function. Now, as published in Science, Squair et al. use a targeted approach to promote axonal growth, leading to functional recovery of complete spinal cord damage in mice and restoring walking ability.
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Five questions with Isidro Cortés-Ciriano Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-10 Michael Francisco
After growing up collecting fossils and reading science books, this group leader’s research now lies at the interface of biology, artificial intelligence and genomics.
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People Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-10
Recent moves of note in and around the biotech and pharma industries.
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Drug pipeline 3Q23 — ERT, bispecifics and CRISPR in sickle cell disease Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-10
By the end of the quarter, the US Food and Drug Administration (FDA) had racked up 39 innovative drugs approvals, already exceeding last year’s total of 37. Among them are two bispecific antibodies redirecting T cells via the CD3 antigen to overexpressed tumor markers in multiple myeloma that received accelerated approvals in August: Talvey (talquetamab) from Johnson & Johnson links CD3 to GPCRC5D
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Do patent applications and Cooperative Research and Development Agreements between the National Cancer Institute and industry serve the public interest? Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-10 Austin Wesevich, Mark J. Ratain
Policy changes are needed to ensure that Cooperative Research and Development Agreements and patent applications filed by the US National Institutes of Health are aligned with the interests of the American public.
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ChatGPT and medicine: how AI language models are shaping the future and health related careers Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-10 Michael Yan, Giovanni G. Cerri, Fabio Y. Moraes
ChatGPT holds transformative potential for medicine across clinical, research and educational domains.
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3Q23 — VCs feed ‘older children’ as IPO markets stagnate Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-10
Seven US biotech IPOs got away in the quarter, but only early-stage Apogee Therapeutics (Waltham, MA) remained steady in the aftermarket. With precious little IPO interest for biotech, US venture capitalists (VCs) focused on making sure their existing portfolio companies could last out the drought. Six of the top-ten venture rounds in the quarter were series C rounds. Generate:Biomedicines (Somerville
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Integrated vector genomes may contribute to long-term expression in primate liver after AAV administration Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-06 Jenny A. Greig, Kelly M. Martins, Camilo Breton, R. Jason Lamontagne, Yanqing Zhu, Zhenning He, John White, Jing-Xu Zhu, Jessica A. Chichester, Qi Zheng, Zhe Zhang, Peter Bell, Lili Wang, James M. Wilson
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All that Nobel glitters is not biotech gold Nat. Biotechnol. (IF 46.9) Pub Date : 2023-11-02
Quantum dots won the Nobel Prize, but proved to be a miss in the biomedical space.
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Can gene editing drive out HIV and hepatitis viruses from inside cells? Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-30
Armed with gene technologies and CAR-Ts, scientists are attempting to eliminate viruses that escape immune detection and lurk in tissues for years.
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Soil microbiome engineering for sustainability in a changing environment Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-30 Janet K. Jansson, Ryan McClure, Robert G. Egbert
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Expanding access to CAR T cell therapies through local manufacturing Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-26 Magdi Elsallab, Marcela V. Maus
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DNA writing technologies moving toward synthetic genomes Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-26
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Scalable genetic screening for regulatory circuits using compressed Perturb-seq Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-23 Douglas Yao, Loic Binan, Jon Bezney, Brooke Simonton, Jahanara Freedman, Chris J. Frangieh, Kushal Dey, Kathryn Geiger-Schuller, Basak Eraslan, Alexander Gusev, Aviv Regev, Brian Cleary
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Imaging glycosylated RNAs at the subcellular scale Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-23 Petar Hristov, Ryan A. Flynn
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AI for drug discovery is booming, but who owns the patents? Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-23
Biopharma companies debate whether to patent their algorithms for finding medicines.
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Compressed Perturb-seq enables highly efficient genetic screens Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-23
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Hypoimmune cells resist rejection in monkeys Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-23 Asuncion Borrero Borrego, Saar Gill
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Systematic discovery of neoepitope–HLA pairs for neoantigens shared among patients and tumor types Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-19 Hem R. Gurung, Amy J. Heidersbach, Martine Darwish, Pamela Pui Fung Chan, Jenny Li, Maureen Beresini, Oliver A. Zill, Andrew Wallace, Ann-Jay Tong, Dan Hascall, Eric Torres, Andy Chang, Kenny ‘Hei-Wai’ Lou, Yassan Abdolazimi, Christian Hammer, Ana Xavier-Magalhães, Ana Marcu, Samir Vaidya, Daniel D. Le, Ilseyar Akhmetzyanova, Soyoung A. Oh, Amanda J. Moore, Uzodinma N. Uche, Melanie B. Laur, Richard
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Author Correction: Greengenes2 unifies microbial data in a single reference tree. Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-18 Daniel McDonald,Yueyu Jiang,Metin Balaban,Kalen Cantrell,Qiyun Zhu,Antonio Gonzalez,James T Morton,Giorgia Nicolaou,Donovan H Parks,Søren M Karst,Mads Albertsen,Philip Hugenholtz,Todd DeSantis,Se Jin Song,Andrew Bartko,Aki S Havulinna,Pekka Jousilahti,Susan Cheng,Michael Inouye,Teemu Niiranen,Mohit Jain,Veikko Salomaa,Leo Lahti,Siavash Mirarab,Rob Knight
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Author Correction: Generation of accurate, expandable phylogenomic trees with uDance. Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-18 Metin Balaban,Yueyu Jiang,Qiyun Zhu,Daniel McDonald,Rob Knight,Siavash Mirarab
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Perfecting antibodies with language models Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-16 Carlos Outeiral, Charlotte M. Deane
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The chemistry of next-generation sequencing Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-16 Raphaël Rodriguez, Yamuna Krishnan
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Upswing in AI drug-discovery deals Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-12
AI startups have been at the center of a wave of deals driven by companies looking to enrich their drug discovery pipelines. In August, Exelixis paid $80 million to license a small-molecule inhibitor of USP1 from Insilico Medicine, an AI biotech headquartered in Hong Kong. The deal grants Exelixis the right to develop and commercialize lead molecule ISM3091, aimed at a synthetic lethal target implicated
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Autoimmune neuroinflammation newco Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-12
A new company, Arialys Therapeutics, has raised $58 million in seed funding to develop a therapy for a rare brain inflammation caused by autoimmune antibodies. If successful, the strategy could be applicable to other, more prevalent neuropsychiatric disorders. Although the received wisdom is that the central nervous system is shielded from immune responses, recent findings have identified B lymphocytes
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Monitoring protein proximity with fluorogens Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-12 Alexandra Despang
Chemically induced dimerization tools are used for actively perturbing signal transduction in live cells, but most existing methods are not able to be repeatedly reversed. In a study published in Nature Methods, Bottone et al. introduce a system called CATCHFIRE (chemically assisted tethering of chimera by fluorogenic-induced recognition), which allows the monitoring of reversibly induced protein proximity
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Implantable biosensor tracks temperature to detect early transplant rejection in rats Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-12 Anahita Bishop
Kidney transplant rejection is the main cause of graft failure, but detection of early-stage rejection is challenging. Current approaches are either invasive or can have false-positive or false-negative predictions owing to alteration of known rejection biomarkers due to diet, infections or medications unrelated to rejection. In a study published in Science, Madhavpathy and colleagues develop an implantable
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New guise ADCs couple antibodies to degraders Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-12
Nurix Therapeutics and biotech Seagen are combining their expertise to work on an emerging class of anticancer therapeutics known as degrader–antibody conjugates (DACs).
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Advancing missense variant pathogenicity prediction Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-12 Rong Li
Missense variants are DNA nucleotide alterations that result in a protein amino acid change. Of the 71 million possible missense variants in the human genome, only around 0.1% have been clinically classified as pathogenic or benign. In a publication in Science, Cheng and colleagues from Google DeepMind introduce their artificial intelligence (AI) model AlphaMissense, which aims to predict the pathogenicity
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A strategy to incentivize innovation in the health care system: the innovation RVU Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-12 Nathan V. Mallipeddi, Jay Chandra, Marc D. Succi
Encouraging innovation will allow physicians and their academic medical centers to pursue the development of technologies and healthcare practices that will improve patient care.
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Antimicrobials Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-12
Recent patents relating to the production of antimicrobial agents and materials.
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People Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-12
Recent moves of note in and around the biotech and pharma industries.
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Are ecological processes that select beneficial traits in agricultural microbes nature’s intellectual property rights? Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-12 David Kothamasi, Saskia Vermeylen, Sharma Deepika
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A mucin degrader for cancer therapy Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-09 Richard Beatson, Joy M. Burchell
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High-affinity one-step aptamer selection using a non-fouling porous hydrogel Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-05 Naveen K. Singh, Yixun Wang, Connie Wen, Brandon Davis, Xuelin Wang, Kyungsene Lee, Yong Wang
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Fast, instrument-free and low-cost selection of high-affinity aptamers Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-05
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Pheast Therapeutics: Another bite at the apple Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-05
The Weissman lab is taking another swing at ‘don’t eat me’ signaling. They think they have a new and better target.
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Photys Therapeutics: customizing phosphorylation via molecular matchmaking Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-04
Bifunctional molecules that link kinase enzymes with new targets could rewire disease-related cellular processes
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Cartography Biosciences and Nested Therapeutics: Diamonds in the rough Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-02
Two start-ups are taking a deep dive into cancer genomes to unearth new therapeutic targets.
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The community of the DAO Nat. Biotechnol. (IF 46.9) Pub Date : 2023-10-02
Decentralized autonomous organizations are growing as alternative research funding models, but are also strong scientific communities. We should get on board.