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Nitrogen transfer and cross-feeding between Azotobacter chroococcum and Paracoccus aminovorans promotes pyrene degradation ISME J. (IF 11.0) Pub Date : 2023-09-29 Xia Wang, Ying Teng, Xiaomi Wang, Yongfeng Xu, Ran Li, Yi Sun, Shixiang Dai, Wenbo Hu, Hongzhe Wang, Yanning Li, Yan Fang, Yongming Luo
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Microbial controls over soil priming effects under chronic nitrogen and phosphorus additions in subtropical forests ISME J. (IF 11.0) Pub Date : 2023-09-29 Jian Li, Zhan-Feng Liu, Ming-Kang Jin, Wei Zhang, Hans Lambers, Dafeng Hui, Chao Liang, Jing Zhang, Donghai Wu, Jordi Sardans, Josep Peñuelas, Daniel F. Petticord, David W. Frey, Yong-Guan Zhu
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Cultivation and genomic characterization of novel and ubiquitous marine nitrite-oxidizing bacteria from the Nitrospirales ISME J. (IF 11.0) Pub Date : 2023-09-25 Anna J. Mueller, Anne Daebeler, Craig W. Herbold, Rasmus H. Kirkegaard, Holger Daims
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Resource partitioning and amino acid assimilation in a terrestrial geothermal spring ISME J. (IF 11.0) Pub Date : 2023-09-23 Dengxun Lai, Brian P. Hedlund, Rebecca L. Mau, Jian-Yu Jiao, Junhui Li, Michaela Hayer, Paul Dijkstra, Egbert Schwartz, Wen-Jun Li, Hailiang Dong, Marike Palmer, Jeremy A. Dodsworth, En-Min Zhou, Bruce A. Hungate
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Humic acid-dependent respiratory growth of Methanosarcina acetivorans involves pyrroloquinoline quinone ISME J. (IF 11.0) Pub Date : 2023-09-22 Yuanxu Song, Rui Huang, Ling Li, Kaifeng Du, Fanping Zhu, Chao Song, Xianzheng Yuan, Mingyu Wang, Shuguang Wang, James G. Ferry, Shungui Zhou, Zhen Yan
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Two-tiered mutualism improves survival and competitiveness of cross-feeding soil bacteria ISME J. (IF 11.0) Pub Date : 2023-09-22 Zhan-Biao Ge, Zhi-Qiang Zhai, Wan-Ying Xie, Jun Dai, Ke Huang, David R. Johnson, Fang-Jie Zhao, Peng Wang
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Dispersal, habitat filtering, and eco-evolutionary dynamics as drivers of local and global wetland viral biogeography ISME J. (IF 11.0) Pub Date : 2023-09-21 Anneliek M. ter Horst, Jane D. Fudyma, Jacqueline L. Sones, Joanne B. Emerson
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Microbial metabolomic responses to changes in temperature and salinity along the western Antarctic Peninsula ISME J. (IF 11.0) Pub Date : 2023-09-15 H. M. Dawson, E. Connors, N. G. Erazo, J. S. Sacks, V. Mierzejewski, S. M. Rundell, L. T. Carlson, J. W. Deming, A. E. Ingalls, J. S. Bowman, J. N. Young
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Single cell dynamics and nitrogen transformations in the chain forming diatom Chaetoceros affinis ISME J. (IF 11.0) Pub Date : 2023-09-18 Rickard Stenow, Elizabeth K. Robertson, Martin J. Whitehouse, Helle Ploug
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Frequency of change determines effectiveness of microbial response strategies ISME J. (IF 11.0) Pub Date : 2023-09-18 Shengjie Li, Damon Mosier, Xiaoli Dong, Angela Kouris, Guodong Ji, Marc Strous, Muhe Diao
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Regulatory fine-tuning of mcr-1 increases bacterial fitness and stabilises antibiotic resistance in agricultural settings ISME J. (IF 11.0) Pub Date : 2023-09-18 Lois Ogunlana, Divjot Kaur, Liam P. Shaw, Pramod Jangir, Timothy Walsh, Stephan Uphoff, R. C. MacLean
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Trophic interactions shape the spatial organization of medium-chain carboxylic acid producing granular biofilm communities ISME J. (IF 11.0) Pub Date : 2023-09-15 Pieter Candry, Grayson L. Chadwick, José Maria Caravajal-Arroyo, Tim Lacoere, Mari-Karoliina Henriikka Winkler, Ramon Ganigué, Victoria J. Orphan, Korneel Rabaey
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Nitrogen fixation and diazotroph diversity in groundwater systems ISME J. (IF 11.0) Pub Date : 2023-09-15 Xiaohan Liu, Ping Li, Helin Wang, Li-Li Han, Kai Yang, Yanhong Wang, Zhou Jiang, Li Cui, Shuh-Ji Kao
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Oxytetracycline and heavy metals promote the migration of resistance genes in the intestinal microbiome by plasmid transfer ISME J. (IF 11.0) Pub Date : 2023-09-12 Xiaojun Lin, Chaonan Zhang, Ruiqi Han, Shoupeng Li, Huishi Peng, Xiao Zhou, Lu Huang, Yanbin Xu
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Differential effects of wastewater treatment plant effluents on the antibiotic resistomes of diverse river habitats ISME J. (IF 11.0) Pub Date : 2023-09-08 Jangwoo Lee, Feng Ju, Karin Beck, Helmut Bürgmann
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Plastoquinone synthesis inhibition by tetrabromo biphenyldiol as a widespread algicidal mechanism of marine bacteria ISME J. (IF 11.0) Pub Date : 2023-09-08 Zenghu Zhang, Dehai Li, Ruize Xie, Ruoyu Guo, Shailesh Nair, Huan Han, Guojian Zhang, Qun Zhao, Lihua Zhang, Nianzhi Jiao, Yongyu Zhang
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Syntrophic entanglements for propionate and acetate oxidation under thermophilic and high-ammonia conditions ISME J. (IF 11.0) Pub Date : 2023-09-07 Abhijeet Singh, Anna Schnürer, Jan Dolfing, Maria Westerholm
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Starvation responses impact interaction dynamics of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis ISME J. (IF 11.0) Pub Date : 2023-09-05 Bin Liu, Daniel Rios Garza, Didier Gonze, Anna Krzynowek, Kenneth Simoens, Kristel Bernaerts, Annelies Geirnaert, Karoline Faust
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Impact of transient acquired hypermutability on the inter- and intra-species competitiveness of Pseudomonas aeruginosa ISME J. (IF 11.0) Pub Date : 2023-09-04 Yue Yuan On, Wendy Figueroa, Catherine Fan, Pok-Man Ho, Éva Bernadett Bényei, Aaron Weimann, Christopher Ruis, Andres R. Floto, Martin Welch
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Host and microbiome jointly contribute to environmental adaptation ISME J. (IF 11.0) Pub Date : 2023-09-06 Carola Petersen, Inga K. Hamerich, Karen L. Adair, Hanne Griem-Krey, Montserrat Torres Oliva, Marc P. Hoeppner, Brendan J. M. Bohannan, Hinrich Schulenburg
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Functional conservation of microbial communities determines composition predictability in anaerobic digestion ISME J. (IF 11.0) Pub Date : 2023-09-04 Qiang Lin, Lingjuan Li, Jo De Vrieze, Chaonan Li, Xiaoyu Fang, Xiangzhen Li
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Impact of intraspecific variation in insect microbiomes on host phenotype and evolution ISME J. (IF 11.0) Pub Date : 2023-09-02 Claudia Lange, Stéphane Boyer, T. Martijn Bezemer, Marie-Caroline Lefort, Manpreet K. Dhami, Eva Biggs, Ronny Groenteman, Simon V. Fowler, Quentin Paynter, Arletys M. Verdecia Mogena, Martin Kaltenpoth
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Microbial gene expression in Guaymas Basin subsurface sediments responds to hydrothermal stress and energy limitation ISME J. (IF 11.0) Pub Date : 2023-09-01 Paraskevi Mara, Ying-Li Zhou, Andreas Teske, Yuki Morono, David Beaudoin, Virginia Edgcomb
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Emergence of putative energy parasites within Clostridia revealed by genome analysis of a novel endosymbiotic clade ISME J. (IF 11.0) Pub Date : 2023-08-31 Kazuki Takahashi, Hirokazu Kuwahara, Yutaro Horikawa, Kazuki Izawa, Daiki Kato, Tatsuya Inagaki, Masahiro Yuki, Moriya Ohkuma, Yuichi Hongoh
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Hydrogenotrophic methanogenesis is the key process in the obligately syntrophic consortium of the anaerobic ameba Pelomyxa schiedti ISME J. (IF 11.0) Pub Date : 2023-08-26 Sebastian C. Treitli, Pavla Hanousková, Vladimír Beneš, Andreas Brune, Ivan Čepička, Vladimír Hampl
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Novel T4ASS effector with quorum quenching activity ISME J. (IF 11.0) Pub Date : 2023-08-24 Vittorio Venturi, Cristina Bez
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Conversion of steppe to cropland increases spatial heterogeneity of soil functional genes ISME J. (IF 11.0) Pub Date : 2023-08-22 Junjie Liu, Yaping Guo, Haidong Gu, Zhuxiu Liu, Xiaojing Hu, Zhenhua Yu, Yansheng Li, Lujun Li, Yueyu Sui, Jian Jin, Xiaobing Liu, Jonathan M. Adams, Guanghua Wang
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Methylotrophic methanogens and bacteria synergistically demethylate dimethylarsenate in paddy soil and alleviate rice straighthead disease ISME J. (IF 11.0) Pub Date : 2023-08-21 Chuan Chen, Lingyan Li, Yanfen Wang, Xiuzhu Dong, Fang-Jie Zhao
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Palmitoleic acid as a coordinating molecule between the invasive pinewood nematode and its newly associated fungi ISME J. (IF 11.0) Pub Date : 2023-08-21 Jing Ning, Xiaoting Gu, Jiao Zhou, Hongxia Zhang, Jianghua Sun, Lilin Zhao
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Rethinking CSR theory to incorporate microbial metabolic diversity and foraging traits ISME J. (IF 11.0) Pub Date : 2023-08-18 J. L. Wood, A. A. Malik, C. Greening, P. T. Green, M. McGeoch, A. E. Franks
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Well-hidden methanogenesis in deep, organic-rich sediments of Guaymas Basin ISME J. (IF 11.0) Pub Date : 2023-08-18 Diana P. Bojanova, Valerie Y. De Anda, Mojhgan A. Haghnegahdar, Andreas P. Teske, Jeanine L. Ash, Edward D. Young, Brett J. Baker, Douglas E. LaRowe, Jan P. Amend
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Nitrogen and phosphorous acquisition strategies drive coexistence patterns among archaeal lineages in soil ISME J. (IF 11.0) Pub Date : 2023-08-18 Jun Zhao, Laibin Huang, Seemanti Chakrabarti, Jennifer Cooper, EunKyung Choi, Carolina Ganan, Bryn Tolchinsky, Eric W. Triplett, Samira H. Daroub, Willm Martens-Habbena
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Renaissance for magnetotactic bacteria in astrobiology ISME J. (IF 11.0) Pub Date : 2023-08-17 Jianxun Shen, Greig A. Paterson, Yinzhao Wang, Joseph L. Kirschvink, Yongxin Pan, Wei Lin
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Motility mediates satellite formation in confined biofilms ISME J. (IF 11.0) Pub Date : 2023-08-17 Mireia Cordero, Namiko Mitarai, Liselotte Jauffred
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Candidatus Nemesobacterales is a sponge-specific clade of the candidate phylum Desulfobacterota adapted to a symbiotic lifestyle ISME J. (IF 11.0) Pub Date : 2023-08-16 Asimenia Gavriilidou, Burak Avcı, Anastasia Galani, Michelle A. Schorn, Colin J. Ingham, Thijs J. G. Ettema, Hauke Smidt, Detmer Sipkema
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Viruses in deep-sea cold seep sediments harbor diverse survival mechanisms and remain genetically conserved within species ISME J. (IF 11.0) Pub Date : 2023-08-12 Yongyi Peng, Zijian Lu, Donald Pan, Ling-Dong Shi, Zhao Zhao, Qing Liu, Chuwen Zhang, Kuntong Jia, Jiwei Li, Casey R. J. Hubert, Xiyang Dong
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Interspecific competition can drive plasmid loss from a focal species in a microbial community ISME J. (IF 11.0) Pub Date : 2023-08-10 David Sünderhauf, Uli Klümper, William H. Gaze, Edze R. Westra, Stineke van Houte
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Physiological and evolutionary contexts of a new symbiotic species from the nitrogen-recycling gut community of turtle ants ISME J. (IF 11.0) Pub Date : 2023-08-09 Benoît Béchade, Christian S. Cabuslay, Yi Hu, Caroll M. Mendonca, Bahareh Hassanpour, Jonathan Y. Lin, Yangzhou Su, Valerie J. Fiers, Dharman Anandarajan, Richard Lu, Chandler J. Olson, Christophe Duplais, Gail L. Rosen, Corrie S. Moreau, Ludmilla Aristilde, John T. Wertz, Jacob A. Russell
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Potential effects of gut microbiota on host cancers: focus on immunity, DNA damage, cellular pathways, and anticancer therapy ISME J. (IF 11.0) Pub Date : 2023-08-08 Jiaao Sun, Feng Chen, Guangzhen Wu
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Differences in rectal amino acid levels determine bacteria-originated sex pheromone specificity in two closely related flies ISME J. (IF 11.0) Pub Date : 2023-08-07 Zijie Gao, Mingxue Xie, Shiyu Gui, Muyang He, Yongyue Lu, Luoluo Wang, Jingyuan Chen, Guy Smagghe, Jonathan Gershenzon, Daifeng Cheng
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Gut microbial genetic variation modulates host lifespan, sleep, and motor performance ISME J. (IF 11.0) Pub Date : 2023-08-07 Ying Li, Simin Xu, Liying Wang, Hao Shi, Han Wang, Ziyi Fang, Yufan Hu, Jiayu Jin, Yujie Du, Mengqiong Deng, Liang Wang, Zuobin Zhu
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Diversification during cross-kingdom microbial experimental evolution ISME J. (IF 11.0) Pub Date : 2023-07-31 Ákos T. Kovács
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Bacterial–fungal interactions promote parallel evolution of global transcriptional regulators in a widespread Staphylococcus species ISME J. (IF 11.0) Pub Date : 2023-07-31 Casey M. Cosetta, Brittany Niccum, Nick Kamkari, Michael Dente, Matthew Podniesinski, Benjamin E. Wolfe
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Virus–pathogen interactions improve water quality along the Middle Route of the South-to-North Water Diversion Canal ISME J. (IF 11.0) Pub Date : 2023-07-31 Tianyi Chen, Tang Liu, Zongzhi Wu, Bingxue Wang, Qian Chen, Mi Zhang, Enhang Liang, Jinren Ni
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Metabolically diverse microorganisms mediate methylmercury formation under nitrate-reducing conditions in a dynamic hydroelectric reservoir ISME J. (IF 11.0) Pub Date : 2023-07-26 Benjamin D. Peterson, Brett A. Poulin, David P. Krabbenhoft, Michael T. Tate, Austin K. Baldwin, Jesse Naymik, Nick Gastelecutto, Katherine D. McMahon
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Metabolism of plant-derived toxins from its insect host increases the success of the entomopathogenic fungus Beauveria bassiana ISME J. (IF 11.0) Pub Date : 2023-07-21 Ruo Sun, Benke Hong, Michael Reichelt, Katrin Luck, Duc Tam Mai, Xingcong Jiang, Jonathan Gershenzon, Daniel Giddings Vassão
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Spatio-functional organization in virocells of small uncultivated archaea from the deep biosphere ISME J. (IF 11.0) Pub Date : 2023-07-19 Indra Banas, Sarah P. Esser, Victoria Turzynski, André Soares, Polina Novikova, Patrick May, Cristina Moraru, Mike Hasenberg, Janina Rahlff, Paul Wilmes, Andreas Klingl, Alexander J. Probst
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Stepwise pathway for early evolutionary assembly of dissimilatory sulfite and sulfate reduction ISME J. (IF 11.0) Pub Date : 2023-07-19 Sinje Neukirchen, Inês A. C. Pereira, Filipa L. Sousa
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Global scale phylogeography of functional traits and microdiversity in Prochlorococcus ISME J. (IF 11.0) Pub Date : 2023-07-15 Lucas J. Ustick, Alyse A. Larkin, Adam C. Martiny
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Novel pelagiphage isolate Polarivirus skadi is a polar specialist that dominates SAR11-associated bacteriophage communities at high latitudes ISME J. (IF 11.0) Pub Date : 2023-07-14 Holger H. Buchholz, Luis M. Bolaños, Ashley G. Bell, Michelle L. Michelsen, Michael J. Allen, Ben Temperton
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Nitrification and beyond: metabolic versatility of ammonia oxidising archaea ISME J. (IF 11.0) Pub Date : 2023-07-14 Chloe L. Wright, Laura E. Lehtovirta-Morley
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Mcr-dependent methanogenesis in Archaeoglobaceae enriched from a terrestrial hot spring ISME J. (IF 11.0) Pub Date : 2023-07-14 Steffen Buessecker, Grayson L. Chadwick, Melanie E. Quan, Brian P. Hedlund, Jeremy A. Dodsworth, Anne E. Dekas
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Hyphosphere microorganisms facilitate hyphal spreading and root colonization of plant symbiotic fungus in ammonium-enriched soil ISME J. (IF 11.0) Pub Date : 2023-07-13 Kai Sun, Hui-Jun Jiang, Yi-Tong Pan, Fan Lu, Qiang Zhu, Chen-Yu Ma, Ai-Yue Zhang, Jia-Yu Zhou, Wei Zhang, Chuan-Chao Dai
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Trichlorobacter ammonificans, a dedicated acetate-dependent ammonifier with a novel module for dissimilatory nitrate reduction to ammonia ISME J. (IF 11.0) Pub Date : 2023-07-13 Dimitry Y. Sorokin, Tamara V. Tikhonova, Hanna Koch, Eveline M. van den Berg, Renske S. Hinderks, Martin Pabst, Natalia I. Dergousova, Anastasia Y. Soloveva, Gijs J. Kuenen, Vladimir O. Popov, Mark C. M. van Loosdrecht, Sebastian Lücker
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Atlantic water influx and sea-ice cover drive taxonomic and functional shifts in Arctic marine bacterial communities ISME J. (IF 11.0) Pub Date : 2023-07-08 Taylor Priest, Wilken-Jon von Appen, Ellen Oldenburg, Ovidiu Popa, Sinhué Torres-Valdés, Christina Bienhold, Katja Metfies, William Boulton, Thomas Mock, Bernhard M. Fuchs, Rudolf Amann, Antje Boetius, Matthias Wietz
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Differential contribution of nitrifying prokaryotes to groundwater nitrification ISME J. (IF 11.0) Pub Date : 2023-07-08 Markus Krüger, Narendrakumar Chaudhari, Bo Thamdrup, Will A. Overholt, Laura A. Bristow, Martin Taubert, Kirsten Küsel, Nico Jehmlich, Martin von Bergen, Martina Herrmann
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Extreme summers impact cropland and grassland soil microbiomes ISME J. (IF 11.0) Pub Date : 2023-07-07 Qicheng Bei, Thomas Reitz, Beatrix Schnabel, Nico Eisenhauer, Martin Schädler, François Buscot, Anna Heintz-Buschart
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Prey preference in a kleptoplastic dinoflagellate is linked to photosynthetic performance ISME J. (IF 11.0) Pub Date : 2023-06-30 Norico Yamada, Bernard Lepetit, David G. Mann, Brittany N. Sprecher, Jochen M. Buck, Paavo Bergmann, Peter G. Kroth, John J. Bolton, Przemysław Dąbek, Andrzej Witkowski, So-Yeon Kim, Rosa Trobajo
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Antibiotic-degrading resistance changes bacterial community structure via species-specific responses ISME J. (IF 11.0) Pub Date : 2023-06-29 Ayush Pathak, Daniel C. Angst, Ricardo León-Sampedro, Alex R. Hall
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Functional convergence in slow-growing microbial communities arises from thermodynamic constraints ISME J. (IF 11.0) Pub Date : 2023-06-28 Ashish B. George, Tong Wang, Sergei Maslov