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Global scale assessment of urban precipitation anomalies Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-09 Xinxin Sui, Zong-Liang Yang, Marshall Shepherd, Dev Niyogi
Urbanization has accelerated dramatically across the world over the past decades. Urban influence on surface temperatures is now being considered as a correction term in climatological datasets. Although prior research has investigated urban influences on precipitation for specific cities or selected thunderstorm cases, a comprehensive examination of urban precipitation anomalies on a global scale
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Dynamically adjusted cell fate decisions and resilience to mutant invasion during steady-state hematopoiesis revealed by an experimentally parameterized mathematical model Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-09 Natalia L. Komarova, Chiara Rignot, Angela G. Fleischman, Dominik Wodarz
A major next step in hematopoietic stem cell (HSC) biology is to enhance our quantitative understanding of cellular and evolutionary dynamics involved in undisturbed hematopoiesis. Mathematical models have been and continue to be key in this respect, and are most powerful when parameterized experimentally and containing sufficient biological complexity. In this paper, we use data from label propagation
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Microbial richness and air chemistry in aerosols above the PBL confirm 2,000-km long-distance transport of potential human pathogens Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-09 Xavier Rodó, Sofya Pozdniakova, Sílvia Borràs, Atsushi Matsuki, Hiroshi Tanimoto, Maria-Pilar Armengol, Irina Pey, Jordi Vila, Laura Muñoz, Samuel Santamaria, Lidia Cañas, Josep-Anton Morguí, Alejandro Fontal, Roger Curcoll
The existence of viable human pathogens in bioaerosols which can cause infection or affect human health has been the subject of little research. In this study, data provided by 10 tropospheric aircraft surveys over Japan in 2014 confirm the existence of a vast diversity of microbial species up to 3,000 m height, which can be dispersed above the planetary boundary layer over distances of up to 2,000
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Iron: Life’s primeval transition metal Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-09 Jena E. Johnson, Theodore M. Present, Joan Selverstone Valentine
Modern life requires many different metal ions, which enable diverse biochemical functions. It is commonly assumed that metal ions’ environmental availabilities controlled the evolution of early life. We argue that evolution can only explore the chemistry that life encounters, and fortuitous chemical interactions between metal ions and biological compounds can only be selected for if they first occur
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COVID-19 lockdown effects on adolescent brain structure suggest accelerated maturation that is more pronounced in females than in males Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-09 Neva M. Corrigan, Ariel Rokem, Patricia K. Kuhl
Adolescence is a period of substantial social–emotional development, accompanied by dramatic changes to brain structure and function. Social isolation due to lockdowns that were imposed because of the COVID-19 pandemic had a detrimental impact on adolescent mental health, with the mental health of females more affected than males. We assessed the impact of the COVID-19 pandemic lockdowns on adolescent
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Rethinking livestock encroachment at a protected area boundary Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-09 Wenjing Xu, Bilal Butt
The presence of livestock inside protected areas, or “livestock encroachment,” is a global conservation concern because livestock is broadly thought to negatively affect wildlife. The Maasai Mara National Reserve (MMNR), Kenya, exemplifies this tension as livestock is believed to have resulted in the declining wildlife populations, contributing to the strict and sometimes violent exclusion measures
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Effects of system-sanctioned framing on climate awareness and environmental action in the United States and beyond Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-09 Katherine A. Mason, Madalina Vlasceanu, John T. Jost
Despite growing scientific alarm about anthropogenic climate change, the world is not on track to solve the crisis. Inaction may be partially explained by skepticism about climate change and resistance to proenvironmental policies from people who are motivated to maintain the status quo (i.e., conservative-rightists). Therefore, practical interventions are needed. In the present research program, we
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Sterol–lipids enable large-scale, liquid–liquid phase separation in bilayer membranes of only two components Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-09 Kent J. Wilson, Huy Q. Nguyen, Jacquelyn Gervay-Hague, Sarah L. Keller
Despite longstanding excitement and progress toward understanding liquid–liquid phase separation in natural and artificial membranes, fundamental questions have persisted about which molecules are required for this phenomenon. Except in extraordinary circumstances, the smallest number of components that has produced large-scale, liquid–liquid phase separation in bilayers has stubbornly remained at
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Rapid growth and the evolution of complete metamorphosis in insects Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-09 Christin Manthey, C. Jessica E. Metcalf, Michael T. Monaghan, Ulrich K. Steiner, Jens Rolff
More than 50% of all animal species are insects that undergo complete metamorphosis. The key innovation of these holometabolous insects is a pupal stage between the larva and adult when most structures are completely rebuilt. Why this extreme lifestyle evolved is unclear. Here, we test the hypothesis that a trade-off between growth and differentiation explains the evolution of this novelty. Using a
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People who share encounters with racism are silenced online by humans and machines, but a guideline-reframing intervention holds promise Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-09 Cinoo Lee, Kristina Gligorić, Pratyusha Ria Kalluri, Maggie Harrington, Esin Durmus, Kiara L. Sanchez, Nay San, Danny Tse, Xuan Zhao, MarYam G. Hamedani, Hazel Rose Markus, Dan Jurafsky, Jennifer L. Eberhardt
Are members of marginalized communities silenced on social media when they share personal experiences of racism? Here, we investigate the role of algorithms, humans, and platform guidelines in suppressing disclosures of racial discrimination. In a field study of actual posts from a neighborhood-based social media platform, we find that when users talk about their experiences as targets of racism, their
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Childhood PM 2.5 exposure and upward mobility in the United States Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-09 Sophie-An Kingsbury Lee, Luca Merlo, Francesca Dominici
Although it is well documented that exposure to fine particulate matter (PM 2.5 ) increases the risk of several adverse health outcomes, less is known about its relationship with economic opportunity. Previous studies have relied on regression modeling, which implied strict assumptions regarding confounding adjustments and did not explore geographical heterogeneity. We obtained data for 63,165 US census
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An electrochemical series for materials Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-09 Tim Mueller, Joseph Montoya, Weike Ye, Xiangyun Lei, Linda Hung, Jens Hummelshøj, Michael Puzon, Daniel Martinez, Chris Fajardo, Rachel Abela
The electrochemical series is a useful tool in electrochemistry, but its effectiveness in materials chemistry is limited by the fact that the standard electrochemical series is based on a relatively small set of reactions, many of which are measured in aqueous solutions. To address this problem, we have used machine learning to create an electrochemical series for inorganic materials from tens of thousands
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Interlayer synergistic reaction of radical precursors for ultraefficient 1 O 2 generation via quinone-based covalent organic framework Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-09 Yuan Tao, Yu Hou, Huangsheng Yang, Zeyu Gong, Jiaxing Yu, Huajie Zhong, Qi Fu, Junhui Wang, Fang Zhu, Gangfeng Ouyang
Singlet oxygen ( 1 O 2 ) is important in the environmental remediation field, however, its efficient production has been severely hindered by the ultrafast self-quenching of the as-generated radical precursors in the Fenton-like reactions. Herein, we elaborately designed lamellar anthraquinone-based covalent organic frameworks (DAQ-COF) with sequential localization of the active sites (C═O) at molecular
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Fluorescence-activated droplet sequencing (FAD-seq) directly provides sequences of screening hits in antibody discovery Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-06 Alexis Autour, Christoph A. Merten
Droplet microfluidics has become a very powerful tool in high-throughput screening, including antibody discovery. Screens are usually carried out by physically sorting droplets hosting cells of the desired phenotype, breaking them, recovering the encapsulated cells, and sequencing the paired antibody light and heavy chain genes at the single-cell level. This series of multiple consecutive manipulation
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Enhanced triplet superconductivity in next-generation ultraclean UTe 2 Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-06 Z. Wu, T. I. Weinberger, J. Chen, A. Cabala, D. V. Chichinadze, D. Shaffer, J. Pospíšil, J. Prokleška, T. Haidamak, G. Bastien, V. Sechovský, A. J. Hickey, M. J. Mancera-Ugarte, S. Benjamin, D. E. Graf, Y. Skourski, G. G. Lonzarich, M. Vališka, F. M. Grosche, A. G. Eaton
The unconventional superconductor UTe 2 exhibits numerous signatures of spin-triplet superconductivity—a rare state of matter which could enable quantum computation protected against decoherence. UTe 2 possesses a complex phase landscape comprising two magnetic field-induced superconducting phases, a metamagnetic transition to a field-polarized state, along with pair- and charge-density wave orders
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Sugar signaling modulates SHOOT MERISTEMLESS expression and meristem function in Arabidopsis Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-06 Filipa L. Lopes, Pau Formosa-Jordan, Alice Malivert, Leonor Margalha, Ana Confraria, Regina Feil, John E. Lunn, Henrik Jönsson, Benoît Landrein, Elena Baena-González
In plants, development of all above-ground tissues relies on the shoot apical meristem (SAM) which balances cell proliferation and differentiation to allow life-long growth. To maximize fitness and survival, meristem activity is adjusted to the prevailing conditions through a poorly understood integration of developmental signals with environmental and nutritional information. Here, we show that sugar
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Phenoxyacetic acid enhances nodulation symbiosis during the rapid growth stage of soybean Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-06 Weijun Li, Xinfang Zhu, Mengyue Zhang, Xifeng Yan, Junchen Leng, Yuhong Zhou, Like Liu, Dajian Zhang, Xianzheng Yuan, Dawei Xue, Huiyu Tian, Zhaojun Ding
Root exudates are known signaling agents that influence legume root nodulation, but the molecular mechanisms for nonflavonoid molecules remain largely unexplored. The number of soybean root nodules during the initial growth phase shows substantial discrepancies at distinct developmental junctures. Using a combination of metabolomics analyses on root exudates and nodulation experiments, we identify
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Structural basis for surface activation of the classical complement cascade by the short pentraxin C-reactive protein Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-06 Dylan P. Noone, Marjolein M. E. Isendoorn, Sebastiaan M. W. R. Hamers, Mariska E. Keizer, Jip Wulffelé, Tijn T. van der Velden, Douwe J. Dijkstra, Leendert A. Trouw, Dmitri V. Filippov, Thomas H. Sharp
Human C-reactive protein (CRP) is a pentameric complex involved in immune defense and regulation of autoimmunity. CRP is also a therapeutic target, with both administration and depletion of serum CRP being pursued as a possible treatment for autoimmune and cardiovascular diseases, among others. CRP binds to phosphocholine (PC) moieties on membranes to activate the complement system via the C1 complex
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Achieving metal-like catalysis from semiconductor for on-surface synthesis Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-06 Wenlong E, Wei Yi, Honghe Ding, Junfa Zhu, Federico Rosei, Xueming Yang, Miao Yu
Free of posttransfer, on-surface synthesis (OSS) of single-atomic-layer nanostructures directly on semiconductors holds considerable potential for next-generation devices. However, due to the high diffusion barrier and abundant defects on semiconductor surfaces, extended and well-defined OSS on semiconductors has major difficulty. Furthermore, given semiconductors’ limited thermal catalytic activity
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Efficient asymmetric diffusion channel in MnCo 2 O 4 spinel for ammonium-ion batteries Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-06 Kang Xiao, Bo-Hao Xiao, Jian-Xi Li, Shunsheng Cao, Zhao-Qing Liu
Transition metal oxides ion diffusion channels have been developed for ammonium-ion batteries (AIBs). However, the influence of microstructural features of diffusion channels on the storage and diffusion behavior of NH 4 + is not fully unveiled. In this study, by using MnCo 2 O 4 spinel as a model electrode, the asymmetric ion diffusion channels of MnCo 2 O 4 have been regulated through bond length
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High-level succinic acid production by overexpressing a magnesium transporter in Mannheimia succiniciproducens Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-06 Ji Yeon Kim, Jong An Lee, Jung Ho Ahn, Sang Yup Lee
Succinic acid (SA), a dicarboxylic acid of industrial importance, can be efficiently produced by metabolically engineered Mannheimia succiniciproducens . Although the importance of magnesium (Mg 2+ ) ion on SA production has been evident from our previous studies, the role of Mg 2+ ion remains largely unexplored. In this study, we investigated the impact of Mg 2+ ion on SA production and developed
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Mechanical force matters in early T cell activation Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-06 Marco Fritzsche, Karsten Kruse
Mechanical force has repeatedly been highlighted to be involved in T cell activation. However, the biological significance of mechanical force for T cell receptor signaling remains under active consideration. Here, guided by theoretical analysis, we provide a perspective on how mechanical forces between a T cell and an antigen-presenting cell can influence the bond of a single T cell receptor major
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Gene length could be a critical factor in the aging of the genome. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Monique Brouillette
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Wildlife trade data capture: National policy is foundational to science. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Jamie K Reaser,Jonathan E Kolby
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Collaboration can preserve the integrity of gold standard carbon data from forest inventories. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Sara A Goeking,Christopher W Woodall,Renate Bush,Linda S Heath
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Toward a more credible assessment of the credibility of science by many-analyst studies Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Katrin Auspurg, Josef Brüderl
We discuss a relatively new meta-scientific research design: many-analyst studies that attempt to assess the replicability and credibility of research based on large-scale observational data. In these studies, a large number of analysts try to answer the same research question using the same data. The key idea is the greater the variation in results, the greater the uncertainty in answering the research
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High-skilled immigration enhances regional entrepreneurship Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Inara S. Tareque, Jorge Guzman, Dan Wang
Immigrants are highly entrepreneurial. But, what is the broader relationship between high-skilled immigration and regional entrepreneurship activity beyond the ventures that immigrants establish themselves? Using administrative data on newly awarded H-1B visas in the United States, we document a positive relationship between high-skilled immigration and regional entrepreneurship. A doubling of immigrants
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Gold nanorod–assisted theranostic solution for nonvisible residual disease in bladder cancer Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Paolo Armanetti, Irene Locatelli, Chiara Venegoni, Elisa Alchera, Beatrice Campanella, Filippo Pederzoli, Mirko Maturi, Erica Locatelli, Silvia Tortorella, Flavio Curnis, Angelo Corti, Roberta Lucianò, Massimo Onor, Andrea Salonia, Francesco Montorsi, Marco Moschini, Viktor Popov, Jithin Jose, Mauro Comes Franchini, Ean Hin Ooi, Luca Menichetti, Massimo Alfano
Residual nonvisible bladder cancer after proper treatment caused by technological and therapeutic limitations is responsible for tumor relapse and progression. This study aimed to demonstrate the feasibility of a solution for simultaneous detection and treatment of bladder cancer lesions smaller than one millimeter. The α5β1 integrin was identified as a specific marker in 81% of human high-grade nonmuscle
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Structural and virologic mechanism of the emergence of resistance to M pro inhibitors in SARS-CoV-2 Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Shin-ichiro Hattori, Haydar Bulut, Hironori Hayashi, Naoki Kishimoto, Nobutoki Takamune, Kazuya Hasegawa, Yuri Furusawa, Seiya Yamayoshi, Kazutaka Murayama, Hirokazu Tamamura, Mi Li, Alexander Wlodawer, Yoshihiro Kawaoka, Shogo Misumi, Hiroaki Mitsuya
We generated SARS-CoV-2 variants resistant to three SARS-CoV-2 main protease (M pro ) inhibitors (nirmatrelvir, TKB245, and 5h), by propagating the ancestral SARS-CoV-2 WK521 WT in VeroE6 TMPRSS2 cells with increasing concentrations of each inhibitor and examined their structural and virologic profiles. A predominant E166V-carrying variant (SARS-CoV-2 WK521 E166V ), which emerged when passaged with
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Biosynthesis of resolvin D1, resolvin D2, and RCTR1 from 7,8(S,S)-epoxytetraene in human neutrophils and macrophages Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Robert Nshimiyimana, Mélissa Simard, Tarvi Teder, Ana R. Rodriguez, Bernd W. Spur, Jesper Z. Haeggström, Charles N. Serhan
While the acute inflammatory response to harmful stimuli is protective, unrestrained neutrophil swarming drives collateral tissue damage and inflammation. Biosynthesized from omega-3 essential polyunsaturated fatty acids, resolvins are a family of signaling molecules produced by immune cells within the resolution phase to orchestrate return to homeostasis. Understanding the mechanisms that govern biosynthesis
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Breaking the activity–selectivity trade-off of CO 2 hydrogenation to light olefins Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Xiaoyue Wang, Ting Zeng, Xiaohong Guo, Zhiqiang Yan, Hongyan Ban, Ruwei Yao, Congming Li, Xiang-Kui Gu, Mingyue Ding
Catalytic hydrogenation of CO 2 to value-added fuels and chemicals is of great importance to carbon neutrality but suffers from an activity–selectivity trade-off, leading to limited catalytic performance. Herein, the ZnFeAlO 4 + SAPO-34 composite catalyst was designed, which can simultaneously achieve a CO 2 conversion of 42%, a CO selectivity of 50%, and a C 2 –C 4 = selectivity of 83%, resulting
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Molecular-level design of alternative media for energy-saving pilot-scale fibrillation of nanocellulose Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Shih-Hsien Liu, Shalini J. Rukmani, Mood Mohan, Yan Yu, Derya Vural, Donna A. Johnson, Katie Copenhaver, Samarthya Bhagia, Meghan E. Lamm, Kai Li, Jihua Chen, Monojoy Goswami, Micholas Dean Smith, Loukas Petridis, Soydan Ozcan, Jeremy C. Smith
The outstanding mechanical properties, light weight, and biodegradability of cellulose nanofibrils (CNFs) make them promising components of renewable and sustainable next-generation reinforced composite biomaterials and bioplastics. Manufacturing CNFs at a pilot scale requires disc-refining fibrillation of dilute cellulose fibers in aqueous pulp suspensions to shear the fibers apart into their nanodimensional
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Mechanical confinement prevents ectopic platelet release Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Ines Guinard, Noémie Brassard-Jollive, Laurie Ruch, Josiane Weber, Anita Eckly, Julie Boscher, Catherine Léon
Blood platelets are produced by megakaryocytes (MKs), their parent cells, which are in the bone marrow. Once mature, MK pierces through the sinusoid vessel, and the initial protrusion further elongates as proplatelet or buds to release platelets. The mechanisms controlling the decision to initiate proplatelet and platelet formation are unknown. Here, we show that the mechanical properties of the microenvironment
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Decoding the molecular mechanism of selective autophagy of glycogen mediated by autophagy receptor STBD1 Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Yuchao Zhang, Yishan Sun, Jungang Shi, Peng Xu, Yingli Wang, Jianping Liu, Xinyu Gong, Yaru Wang, Yubin Tang, Haobo Liu, Xindi Zhou, Zhiqiao Lin, Otto Baba, Tsuyoshi Morita, Biao Yu, Lifeng Pan
Autophagy of glycogen (glycophagy) is crucial for the maintenance of cellular glucose homeostasis and physiology in mammals. STBD1 can serve as an autophagy receptor to mediate glycophagy by specifically recognizing glycogen and relevant key autophagic factors, but with poorly understood mechanisms. Here, we systematically characterize the interactions of STBD1 with glycogen and related saccharides
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Single-molecule force spectroscopy reveals intra- and intermolecular interactions of Caenorhabditis elegans HMP-1 during mechanotransduction Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Shimin Le, Miao Yu, Chaoyu Fu, Jonathon A. Heier, Sterling Martin, Jeff Hardin, Jie Yan
The Caenorhabditis elegans HMP-2/HMP-1 complex, akin to the mammalian β -catenin- α -catenin complex, serves as a critical mechanosensor at cell–cell adherens junctions, transducing tension between HMR-1 (also known as cadherin in mammals) and the actin cytoskeleton. Essential for embryonic development and tissue integrity in C. elegans , this complex experiences tension from both internal actomyosin
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Presaccadic preview shapes postsaccadic processing more where perception is poor Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Xiaoyi Liu, David Melcher, Marisa Carrasco, Nina M. Hanning
The presaccadic preview of a peripheral target enhances the efficiency of its postsaccadic processing, termed the extrafoveal preview effect. Peripheral visual performance—and thus the quality of the preview—varies around the visual field, even at isoeccentric locations: It is better along the horizontal than vertical meridian and along the lower than upper vertical meridian. To investigate whether
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Performance enhancement and mechanism of electroenhanced peroxymonosulfate activation by single-atom Fe catalyst modified electrodes Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Shuaishuai Li, Wei Wang, Huizhong Wu, Xiuwu Zhang, Ruiheng Liang, Xuyang Zhang, Ge Song, Jiana Jing, Shasha Li, Minghua Zhou
Peroxymonosulfate-based electrochemical advanced oxidation processes (PMS-EAOPs) have great potential for sustainable water purification, so an in-depth understanding of its catalytic mechanism is imperative to facilitate its practical application. Herein, the performance enhancement and mechanism of electroenhanced PMS activation by single-atom Fe catalyst modified carbon felt was investigated. Compared
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Capillary regression leads to sustained local hypoperfusion by inducing constriction of upstream transitional vessels Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Stephanie K. Bonney, Cara D. Nielson, Maria J. Sosa, Orla Bonnar, Andy Y. Shih
In the brain, a microvascular sensory web coordinates oxygen delivery to regions of neuronal activity. This involves a dense network of capillaries that send conductive signals upstream to feeding arterioles to promote vasodilation and blood flow. Although this process is critical to the metabolic supply of healthy brain tissue, it may also be a point of vulnerability in disease. Deterioration of capillary
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Deep learning models map rapid plant species changes from citizen science and remote sensing data Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-05 Lauren E. Gillespie, Megan Ruffley, Moises Exposito-Alonso
Anthropogenic habitat destruction and climate change are reshaping the geographic distribution of plants worldwide. However, we are still unable to map species shifts at high spatial, temporal, and taxonomic resolution. Here, we develop a deep learning model trained using remote sensing images from California paired with half a million citizen science observations that can map the distribution of over
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High-resolution stereolithography: Negative spaces enabled by control of fluid mechanics Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-04 Ian A. Coates, William Pan, Max A. Saccone, Gabriel Lipkowitz, Dan Ilyin, Madison M. Driskill, Maria T. Dulay, Curtis W. Frank, Eric S. G. Shaqfeh, Joseph M. DeSimone
Stereolithography enables the fabrication of three-dimensional (3D) freeform structures via light-induced polymerization. However, the accumulation of ultraviolet dose within resin trapped in negative spaces, such as microfluidic channels or voids, can result in the unintended closing, referred to as overcuring, of these negative spaces. We report the use of injection continuous liquid interface production
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Inherited human RelB deficiency impairs innate and adaptive immunity to infection Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-04 Tom Le Voyer, Majistor Raj Luxman Maglorius Renkilaraj, Kunihiko Moriya, Malena Pérez Lorenzo, Tina Nguyen, Liwei Gao, Tamar Rubin, Axel Cederholm, Masato Ogishi, Carlos A. Arango-Franco, Vivien Béziat, Romain Lévy, Mélanie Migaud, Franck Rapaport, Yuval Itan, Elissa K. Deenick, Irene Cortese, Andrea Lisco, Kaan Boztug, Laurent Abel, Stéphanie Boisson-Dupuis, Bertrand Boisson, Patrick Frosk, Cindy
We report two unrelated adults with homozygous (P1) or compound heterozygous (P2) private loss-of-function variants of V-Rel Reticuloendotheliosis Viral Oncogene Homolog B ( RELB). The resulting deficiency of functional RelB impairs the induction of NFKB2 mRNA and NF-κB2 (p100/p52) protein by lymphotoxin in the fibroblasts of the patients. These defects are rescued by transduction with wild-type RELB
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Topology-driven collective dynamics of nematic colloidal entanglement Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-04 Jinghua Jiang, Oluwafemi Isaac Akomolafe, Xinyu Wang, Zhawure Asilehan, Wentao Tang, Jing Zhang, Zijun Chen, Ruijie Wang, Kamal Ranabhat, Rui Zhang, Chenhui Peng
Entanglement in a soft condensed matter system is enabled in the form of entangled disclination lines by using colloidal particles in nematic liquid crystals. These topological excitations are manifested as colloidal entanglement at equilibrium. How to further utilize nonequilibrium disclination lines to manipulate colloidal entanglement remains a nontrivial and challenging task. In this work, we use
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ERRα and ERRγ coordinate expression of genes associated with Alzheimer’s disease, inhibiting DKK1 to suppress tau phosphorylation Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-04 Kaoru Sato, Ken-ichi Takayama, Yuko Saito, Satoshi Inoue
Alzheimer’s disease (AD) is a prevalent neurodegenerative disease characterized by cognitive decline and learning/memory impairment associated with neuronal cell loss. Estrogen-related receptor α (ERRα) and ERRγ, which are highly expressed in the brain, have emerged as potential AD regulators, with unelucidated underlying mechanisms. Here, we identified genome-wide binding sites for ERRα and ERRγ in
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Structure-based design of a soluble human cytomegalovirus glycoprotein B antigen stabilized in a prefusion-like conformation Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-04 Madeline R. Sponholtz, Patrick O. Byrne, Alison G. Lee, Ajit R. Ramamohan, Jory A. Goldsmith, Ryan S. McCool, Ling Zhou, Nicole V. Johnson, Ching-Lin Hsieh, Megan Connors, Krithika P. Karthigeyan, Chelsea M. Crooks, Adelaide S. Fuller, John D. Campbell, Sallie R. Permar, Jennifer A. Maynard, Dong Yu, Matthew J. Bottomley, Jason S. McLellan
Human cytomegalovirus (HCMV) glycoprotein B (gB) is a class III membrane fusion protein required for viral entry. HCMV vaccine candidates containing gB have demonstrated moderate clinical efficacy, but no HCMV vaccine has been approved. Here, we used structure-based design to identify and characterize amino acid substitutions that stabilize gB in its metastable prefusion conformation. One variant containing
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Microevolutionary change in wild stickleback: Using integrative time-series data to infer responses to selection Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-04 Kasha Strickland, Blake Matthews, Zophonías O. Jónsson, Bjarni K. Kristjánsson, Joseph S. Phillips, Árni Einarsson, Katja Räsänen
A central goal in evolutionary biology is to understand how different evolutionary processes cause trait change in wild populations. However, quantifying evolutionary change in the wild requires linking trait change to shifts in allele frequencies at causal loci. Nevertheless, datasets that allow for such tests are extremely rare and existing theoretical approaches poorly account for the evolutionary
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The Mitotic Checkpoint Complex controls the association of Cdc20 regulatory protein with the ubiquitin ligase APC/C in mitosis Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-04 Danielle Sitry-Shevah, Shirly Miniowitz-Shemtov, Tanya Liburkin Dan, Avram Hershko
The ubiquitin ligase Anaphase-Promoting Complex/Cyclosome (APC/C) and its regulatory protein Cdc20 play important roles in the control of different stages of mitosis. APC/C associated with Cdc20 is active and promotes metaphase–anaphase transition by targeting for degradation inhibitors of anaphase initiation. Earlier in mitosis, premature action of APC/C is prevented by the mitotic checkpoint (or
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Time-resolved NMR detection of prolyl-hydroxylation in intrinsically disordered region of HIF-1α Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-04 Wenguang He, Geneviève M. C. Gasmi-Seabrook, Mitsuhiko Ikura, Jeffrey E. Lee, Michael Ohh
Prolyl-hydroxylation is an oxygen-dependent posttranslational modification (PTM) that is known to regulate fibril formation of collagenous proteins and modulate cellular expression of hypoxia-inducible factor (HIF) α subunits. However, our understanding of this important but relatively rare PTM has remained incomplete due to the lack of biophysical methodologies that can directly measure multiple
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Regulation of intercellular viscosity by E-cadherin-dependent phosphorylation of EGFR in collective cell migration Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-04 Chaoyu Fu, Florian Dilasser, Shao-Zhen Lin, Marc Karnat, Aditya Arora, Harini Rajendiran, Hui Ting Ong, Nai Mui Hoon Brenda, Sound Wai Phow, Tsuyoshi Hirashima, Michael Sheetz, Jean-François Rupprecht, Sham Tlili, Virgile Viasnoff
Collective cell migration is crucial in various physiological processes, including wound healing, morphogenesis, and cancer metastasis. Adherens Junctions (AJs) play a pivotal role in regulating cell cohesion and migration dynamics during tissue remodeling. While the role and origin of the junctional mechanical tension at AJs have been extensively studied, the influence of the actin cortex structure
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Cellular and circuit remodeling of the primate foveal midget pathway after acute photoreceptor loss Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-04 Ryutaro Akiba, Shane Lind Boniec, Sharm Knecht, Hirofumi Uyama, Hung-Ya Tu, Takayuki Baba, Masayo Takahashi, Michiko Mandai, Rachel O. Wong
The retinal fovea in human and nonhuman primates is essential for high acuity and color vision. Within the fovea lies specialized circuitry in which signals from a single cone photoreceptor are largely conveyed to one ON and one OFF type midget bipolar cell (MBC), which in turn connect to a single ON or OFF midget ganglion cell (MGC), respectively. Restoring foveal vision requires not only photoreceptor
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Social evolution and reproductive castes in trematode parasites. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-03 Miriam H Richards
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Integrating life history and behavioral aging in the wild. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-03 Quinn Webber
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Evolution fails to rescue a population in an increasingly variable environment. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-03 Laure Olazcuaga,Ruth A Hufbauer
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Reply to Jautzy et al.: Considerations on methane equilibrium-do not forget to add the pepper. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-03 Anirban Chowdhury,Gregory T Ventura,Yaisa Owino,Ellen J Lalk,Natasha MacAdam,John M Dooma,Shuhei Ono,Martin Fowler,Adam MacDonald,R Andrew MacRae,Casey R J Hubert,Jeremy N Bentley,Mitchell J Kerr
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Diapiric controls on deep-biosphere oases: Take with a grain of salt. Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-03 Josué J Jautzy,Calvin Campbell,Pierre-Arnaud Desiage,Peter M J Douglas,Benjamin R Fosu,Stéphanie Larmagnat,Martine M Savard
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Interoceptive signals shape the earliest markers and neural pathway to awareness at the visual threshold Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-03 Viviana Leupin, Juliane Britz
Variations in interoceptive signals from the baroreceptors (BRs) across the cardiac and respiratory cycle can modulate cortical excitability and so affect awareness. It remains debated at what stages of processing they affect awareness-related event-related potentials (ERPs) in different sensory modalities. We investigated the influence of the cardiac (systole/diastole) and the respiratory (inhalation/exhalation)
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Joint trajectory inference for single-cell genomics using deep learning with a mixture prior Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-03 Jin-Hong Du, Tianyu Chen, Ming Gao, Jingshu Wang
Trajectory inference methods are essential for analyzing the developmental paths of cells in single-cell sequencing datasets. It provides insights into cellular differentiation, transitions, and lineage hierarchies, helping unravel the dynamic processes underlying development and disease progression. However, many existing tools lack a coherent statistical model and reliable uncertainty quantification
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Perpendicular crossing chains enable high mobility in a noncrystalline conjugated polymer Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-03 Jack F. Coker, Stefania Moro, Anders S. Gertsen, Xingyuan Shi, Drew Pearce, Martin P. van der Schelling, Yucheng Xu, Weimin Zhang, Jens W. Andreasen, Chad R. Snyder, Lee J. Richter, Matthew J. Bird, Iain McCulloch, Giovanni Costantini, Jarvist M. Frost, Jenny Nelson
The nature of interchain π-system contacts, and their relationship to hole transport, are elucidated for the high-mobility, noncrystalline conjugated polymer C16-IDTBT by the application of scanning tunneling microscopy, molecular dynamics, and quantum chemical calculations. The microstructure is shown to favor an unusual packing motif in which paired chains cross-over one another at near-perpendicular
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Tip extension and simultaneous multiple fission in a filamentous bacterium Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2024-09-03 Scott Chimileski, Gary G. Borisy, Floyd E. Dewhirst, Jessica L. Mark Welch
Organisms display an immense variety of shapes, sizes, and reproductive strategies. At microscopic scales, bacterial cell morphology and growth dynamics are adaptive traits that influence the spatial organization of microbial communities. In one such community—the human dental plaque biofilm—a network of filamentous Corynebacterium matruchotii cells forms the core of bacterial consortia known as hedgehogs