The Southern Ocean (SO) is the least understood environment on earth, but anthropogenic impacts related to climate change, fishing activities and tourism are already well-established in the region. Herein, we investigate biodiversity patterns in the Atlantic Sector of the SO by investigating a considerable number of samples collected from a wide depth range (89–6224 m). Three topics are addressed:

AbstractProtists are probably the most species-rich eukaryotes, yet their systematics are inaccurate, leading to an underestimation of their actual diversity. Arcellinida (= lobose testate amoebae) are amoebozoans that build a test (a hard shell) whose shape and composition are taxonomically informative. One of the most successful groups is Arcellidae, a family found worldwide in many freshwater and

AbstractWe present a phylogeny of Chrysopidae inferred from combining molecular and morphological data. Apochrysinae were recovered as sister to the rest of the family (Nothochrysinae and Chrysopinae). The monogeneric tribe Nothancylini is confirmed as sister to the remaining Chrysopinae. The other four tribes are grouped in two clades: Belonopterygini + Leucochrysini and Ankylopterygini + Chrysopini

AbstractAfter more than one-hundred years of studies, there is still no consensus regarding the names for the nasal elements in Pipidae and their correspondence to that of other frogs. Names vary depending on authors’ preferences for an explanatory process associated with the observed state of the structure. Some of the names indicate absence, while others indicate fusion. As naming morphological structures

Several species of Cophomantini are known to have an enlarged prepollex, commonly modified as an osseous spine. We surveyed the osteology and myology of the prepollex and associated elements of 94 of the 190 species of Cophomantini, sampling all genera, except Nesorohyla. Two distinct prepollex morphologies were found: a blade-shaped and a spine-shaped morphology. We described the observed variation

AbstractIsodiametridae is a large family of Acoela with 22 nominal genera and nearly 100 species. Unfortunately, systematics of Isodiametridae, as it stands, is highly problematic. Genera frequently have been proposed without reference to an explicit phylogenetic hypothesis, such that the current classification system holds little or no predictive power. Many taxa do not fit with the family diagnosis

AbstractOceanic squids of the order Oegopsida are ecologically and economically important members of the pelagic environment. They are the most diverse group of cephalopods, with 24 families that are divergent morphologically. Despite their importance, knowledge of phylogenetic relationships among oegopsids is less than that among neritic cephalopods. Here, we provide the complete mitogenomes and the

AbstractHexactinellid sponges are important members of deep-sea benthic ecosystems because they provide available hard substrate habitats for filter-feeding invertebrates. However, symbioses between hexactinellid sponges and their symbionts are poorly known. Zoantharians associated with hexactinellid sponges have been reported widely from deep-sea marine ecosystems, either on the bodies or stalks of

The mammalian order Carnivora is characterized by a broad taxonomic and ecological diversity. By using a large sample of extant species, we tested the impact of ecological factors on carnivoran skull (cranium and mandible) morphology, taking advantage of a combined geometric morphometrics and comparative method approach. We implemented several evolutionary models to account for different tempo and

AbstractBrachycephaloidea (composed of 1183 species) is the most diverse superfamily of amphibians. In recent years, molecular techniques utilizing genetic markers have significantly improved our understanding of the phylogeny of this superfamily. However, with the expansion of molecular techniques, phenotypic characters have received increasingly less attention. In an effort to highlight the contributions

More than half the ray-finned fishes and about one-quarter of all living vertebrates belong to Percomorphacea. Among its 30 orders, Stromateiformes encompass 77 species in 16 genera and six families. Stromateiform monophyly has never been tested using morphology, and it has been rejected by molecular analyses. This comprehensive revision of Stromateiformes includes all its valid genera of all percomorph

AbstractEnchytraeid worms collected in South Africa and on the Marion, South Orkney, South Georgia and South Shetland Islands during 2008–2015 were studied using morphology and seven genetic markers. Nine species were recognized: one terrestrial (Christensenidrilus blocki) and all the others marine littoral (five Lumbricillus and three Marionina s.s.). An estimated phylogeny including other enchytraeids

For almost 30 years, there have been active discussions about the taxonomic impediment and the challenge this represents to address the current human-induced biodiversity crisis. From the start (Systematics Agenda 2000, 1994), the term ‘taxonomic impediment’ has been ambiguous, designating both the insufficiency and inadequacy of the resources put to the service of taxonomy (the taxonomic impediment

AbstractThis investigation of the application of shell protein information to gastropod systematics initially utilized available Lottia gigantea sequences and a transcriptome of Patelloida mimula developed here. Levels of differentiation between predicted sequences of reciprocal best-hit potential homologues in P. mimula and L. gigantea suggested that they could be useful within families, and possibly

AbstractIn 2016, three specimens of Caymanostella were collected from the Kuril-Kamchatka Trench area at depths of 5101–5134 m. Comparative morphological analysis revealed that the new specimens are similar to Caymanostella spinimarginata, the most geographically distant species (Atlantic Ocean). The new specimens were identified as C. cf. spinimarginata. Multilocus genetic data were obtained for the

AbstractOften the first point of contact between predator and prey, mammalian canine teeth are essential for killing, dismembering and consuming prey. Yet despite their importance, few associations among shape, function and phylogeny are established. We undertook the first comprehensive analysis of canine tooth shape across predatory mammals (Carnivora, Didelphimorphia and Dasyuromorphia), integrating

AbstractHuman-mediated pressures, including bioinvasions, threaten the biotas of every continent. Hybridization and introgression between invasive and native species may result in loss of genetic integrity of native taxa but, in many cases, these events are hard to detect because the invader is impossible to tell apart from the native taxon. The problem of cryptic invasive taxa and its importance for

AbstractWhy do some genera radiate, whereas others do not? The genetic structure of present-day populations can provide clues for developing hypotheses. In New Zealand, three Cicadidae genera are depauperate [Amphipsalta (three species), Notopsalta (one species) and Rhodopsalta (three species)], whereas two have speciated extensively [Kikihia (~30 species/subspecies) and Maoricicada (~20 species/subspecies)

AbstractThe skink genus Lobulia is endemic to New Guinea, the largest and highest tropical island in the world. Lobulia and its related genera represent an important component of the montane herpetofauna of New Guinea, but it remains understudied and poorly known. We here provide the first, large-scale, systematic revision of Lobulia, using molecular phylogenetic and morphological comparisons to assess

The cranial appendage (headgear) is an iconic structure of modern ruminants, and four of the five extant pecoran families display morphological and physiological specialties. They probably share one origin from the same genetic basis, whereas the evolution of the cranial appendages is still debatable, especially in consideration of fossil taxa lacking headgear. Amphimoschus is an enigmatic pecoran

Species richness in the genus Pristimantis is underestimated due to the existence of morphologically cryptic species. This is worsened by the low sampling effort and the lack of studies using genetic markers. Here, we use molecular and morphological data to determine the phylogenetic relationships of a clade of Pristimantis distributed throughout montane tropical forests in the eastern Andes, from

The cosmetids are conspicuous harvestmen, remarkably diverse in size, shape and colour. However, the effectiveness of all these morphological traits for diagnosing groups is scarcely explored in the literature. Since the early 20th century, the family Cosmetidae has been divided into two subfamilies, Cosmetinae and Discosomaticinae, and there has been no further effort to delimit additional or alternative

AbstractTaxonomic distinction of species forms the foundation of biodiversity assessments and conservation priorities. However, traditional morphological and/or genetics-based taxonomic assessments frequently miss the opportunity of elaborating on the ecological and functional context of species diversification. Here, we used 3D geometric morphometrics of the cranium to improve taxonomic differentiation

Haustoriid amphipods have received little recent attention and their systematics and phylogenetics are largely unresolved. Some efforts have been made at classifying the family within the broader Amphipoda, but there is persistent incongruence in its placement among different authors and techniques. Furthermore, there exists no phylogenetic hypothesis of intrafamilial relationships. In this work, we

AbstractThe present contribution addresses the phylogeny and biogeography of the pantropical whip spider family Charinidae Quintero, 1986, the most species-rich in the arachnid order Amblypygi Thorell, 1883, based on morphology and multilocus DNA sequences, analysed simultaneously using parsimony, maximum likelihood and Bayesian inference. The morphological matrix comprises 138 characters, scored for

The tribe Tomarini is represented by the sole genus Tomares, comprising about eight species distributed from the western Mediterranean to Central Asia. We carried out a multilocus phylogenetic and a biogeographical analysis to test the taxonomy of the genus by several molecular species delimitation methods and reveal patterns shaping the current distribution of Tomares. The phylogenetic analysis based

Mites of the genus Analges (Acariformes: Analgidae) inhabit the down feathers of passeriform birds. The evolutionary history of Analges and the co-phylogentic relationships between these mites and their hosts are unknown. Our phylogenetic analysis supported the monophyly of the genus, but it did not support previous taxonomic hypotheses subdividing the genus into the subgenera Analges and Analgopsis

AbstractIndividual identification is crucial for studying animal ecology and evolution. In birds this is often achieved by capturing and tagging. However, these methods are insufficient for identifying individuals/species that are secretive or difficult to catch. Here, we employ an automatic analytical approach to predict the identity of bird females based on the appearance of their eggs, using the

AbstractAlthough molecular methods and bioacoustical analysis have been used to uncover cryptic species, the combination of both methodologies is still rare. The humbug damselfish complex, Dascyllus aruanus, is composed of at least two species with Dascyllus aruanus in the Pacific Ocean and Dascyllus abudafur in the Indian Ocean. However, genetic data suggest that additional species could be found

Vermileonidae (wormlions) comprises 61 described species in 12 genera and is one of the oddest and most rarely collected dipteran families. Larvae of Vermileonidae are famous for their pitfall prey behaviour, whereas the adults are rarely seen. Here we report, for the first time, the complete mitochondrial genome from members of Vermileonidae. Phylogenetic reconstruction based on a representative sampling

Genetic and morphological analyses were used to revise historical controversies in identities of Beroe species in the southern seas of Europe. DNA analyses with ITS sequences were used to explore their phylogenetic relationships. Three species of Beroe were initially listed as occurring in the Mediterranean Sea. Recently, the specimens were often re-identified using genetic analyses, causing confusions

AbstractAs a result of numerous fossil and subfossil finds of ostriches, there is great demand for a comprehensive osteometric dataset for the living species and subspecies of the genus Struthio. We meet this demand by providing a set of > 100 measurements for a sample of 18 sexed skeletons, including all living and recently extinct species and subspecies of ostriches. We provide the first mensural

The genus Anax is a group of cosmopolitan dragonflies noted for its conspicuous migratory behaviours and large size. Here we present the first dated, species-level, multigene, molecular phylogeny for the group to test generic and species-limits, as well as the evolution of migration and range size. Using five mitochondrial and nuclear gene regions (COI, COI/COII, CYTB/ND1, ITS1 and PRMT) from 20 species

AbstractWe studied the bone and dental histology of the tri-dactyl equid Eurygnathohippus hooijeri, one of the most iconic mammals found at the world-renowned Pliocene site of Langebaanweg, South Africa, to reconstruct important features of its life history. Our results show that key life-history events, such as weaning, skeletal maturity and reproductive maturity, occurred later in this African hipparionine

Vocal diversity might reflect the social organization and sustain the coexistence of cryptic species in sympatry. To test the extent to which vocal behaviour separates sympatric, cryptic species of a bat radiation, we compared vocalizations of genetically confirmed Carollia castanea, Carollia sowelli and Carollia perspicillata emitted by intraspecific dyads of identified individuals during corresponding

AbstractThe hyperdiverse shrew genus Crocidura is one of few small mammal genera distributed across Sundaland and all of its boundaries. This represents a rare opportunity to study the geological history of this region through the evolutionary history of these shrews. We generate a phylogeny of all recognized species of Sundaland Crocidura and show that most speciation events took place during the

Runcinida is a small heterobranch order of sea slugs with 61 known species distributed worldwide across temperate and tropical latitudes with two established families (Ilbiidae and Runcinidae). Little is known about the phylogenetic relationships within Runcinida. Here, we present the first molecular phylogeny of the order with an emphasis on European species and we discuss the taxonomic status of

The West-Palaearctic Colobopsis ant populations have long been considered a single species (Colobopsis truncata). We studied the diversity of this species by employing a multidisciplinary approach and combining data from our surveys, museum and private collections, and citizen science platforms. As a result, we have revealed the existence of a second species, which we describe as Colobopsis imitans

The superfamily Buccinoidea is distributed across the oceans of the world from the Arctic Ocean to the Antarctic and from intertidal to abyssal depths. It encompasses 3351 recent species in 337 genera. The latest taxonomic account recognized eight full families. For the first time, the monophyly of the superfamily and the relationships among the families are tested with molecular data supplemented

AbstractDespite increased use of genomic data in phylogenetics, morphological information remains vital for resolving evolutionary relationships, particularly for fossil taxa. The properties and models of evolution of molecular sequence data are well characterized and mature, relative to those of morphological data. Furthermore, heterogeneity, integration and relative homoplasy of empirical morphological

AbstractUsing a fossilized birth–death model, a new phylogeny of the superfamily Evanioidea (including ensign wasps, nightshade wasps and hatchet wasps) is proposed, with estimates of divergence times for its constitutive families and for corroborating the monophyly of Evanioidea. Additionally, our Bayesian analyses demonstrate the monophyly of †Anomopterellidae, †Othniodellithidae, †Andreneliidae

Skeletal development in salamanders is greatly influenced by their complex life history. Although the relationship between skull development and life history has been investigated in a variety of salamander species, few studies have compared skull development among lineages. Here, we describe the cranial skeletogenesis of the Japanese giant salamander, Andrias japonicus (family Cryptobranchidae), for

AbstractIn non-mammalian synapsids and early mammals, evolutionary transformations in the feeding and hearing apparatuses are posited to have been prerequisites for the radiation of extant mammals. Unlike most vertebrates, including many early synapsids, mammals have precise dental occlusion, a lower jaw composed of one bone, and middle ear ossicles derived from ancestral jaw bones. We illuminate a

The present phylogeographic pattern of red deer in Eurasia is not only a result of the contraction of their distribution range into glacial refugia and postglacial expansion, but probably also an effect of replacement of some red deer s.l. mtDNA lineages by others during the last 50 000 years. To better recognize this process, we analysed 501 sequences of mtDNA cytochrome b, including 194 ancient and

AbstractThe ‘tooth-tailed’ scorpions of the buthid genus Odontobuthus comprises six species with an allopatric or parapatric pattern of distribution in the Middle East, but the diversity of Odontobuthus in Iran appears to be underestimated, with the limits of several species remaining unclear. In the present contribution, an integrative approach to the systematics of Odontobuthus was applied, to determine

Stenochiinae is a subfamily of Tenebrionidae with a mainly pantropical distribution, but with a few species distributed at higher latitudes. In general, Stenochiinae has been little studied, and the taxonomic effort been insufficient to understand all its diversity. Recently, a new taxon of Stenochiinae from Central Chile with remarkable morphological characters was collected. Based on phylogenetic

AbstractCollections of the amphipod genus Oedicerina were obtained during six expeditions devoted to the study of deep-sea environments of the Pacific Ocean. The material revealed four species new to science. Two species (Oedicerina henrici sp. nov. and sp. nov.) were found at abyssal depths of the central eastern Pacific in the Clarion-Clipperton Zone; one species (sp. nov.) (Oedicerina claudei sp

New lagonomegopid spiders are described from Mid-Cretaceous Myanmar (Burmese) amber. Two new genera and species based on single specimens, Scopomegops fax gen. & sp. nov. and Hiatomegops spinalis gen. & sp. nov. are described. Two specimens belonging to Lineaburmops beigeli are further described. Additionally, after re-examining the holotype of Odontomegops titan, a detailed description of its basal

AbstractHere we provide evidence for the presence of non-biting midges of the subfamily Chironominae in the Mesozoic, based on descriptions of exceptionally rare amber inclusions. The subfamily has already been reported, but based on a single and unspecified record from Late Cretaceous Taimyr amber (~84 Mya). That record is here revised and confirmed. Moreover, a new find in Burmese amber locates the

The nearly 150 species of Anostomidae comprise one of the most diverse and taxonomically dynamic families of Neotropical freshwater fishes. A recent revision of the enigmatic and poorly diagnosed genus Anostomoides demonstrated that it contains two valid species, each with complicated taxonomic histories; however, that study did not address their phylogenetic placement. Herein, we integrate molecular

The woolly flying squirrel, Eupetaurus cinereus, is among the rarest and least studied mammals in the world. For much of the 20th century it was thought to be extinct, until it was rediscovered in 1994 in northern Pakistan. This study outlines the first taxonomic and biogeographical review of the genus Eupetaurus, which until now has contained only a single species. Careful review of museum specimens

A new medium-sized canid, Eucyon khoikhoi sp. nov., is described from the early Pliocene site of Langebaanweg ‘E’ Quarry (South Africa). It possesses a robust dentition with large upper- and lower-second molars, an m1 talonid without a transverse cristid between the entoconid and the hypoconid, and a well-developed hypoconulid shelf. Our cladistic analysis of the earliest better-known African canini

Extant baleen whales (Mysticeti) have a deciduous foetal dentition, but are edentulous at birth. Fossils reveal that the earliest mysticetes possessed an adult dentition. Aetiocetids, a diverse clade of Oligocene toothed mysticetes, have a series of small palatal foramina and associated sulci medial to the postcanine dentition. The openings have been homologized with lateral palatal foramina that transmit

AbstractRhinoceroses are among the most endangered mammalian species today. Their past diversity is well documented from the Eocene onward, although their evolutionary history is far from being fully understood. Here, we elucidate the systematic affinities of a Pleistocene rhinoceros species represented by a partial skeleton from 709 ± 68 kya archaeological deposits in Luzon Island, Philippines. We

Linnean shortfalls, or the discrepancy between formally described species and the number of existing species, imply noteworthy biodiversity conservation constraints. The case of Argentinian reptiles is unique in this context. The genus Liolaemus represents ~60% of the Argentine reptile fauna and has a current species description rate of 3.25 spp./year, leading to a significant increase in the number

AbstractPelecanimimus polyodon was discovered in 1993 in the Spanish Barremian fossil site of Las Hoyas, being the first ornithomimosaur described from Europe. So far, there has been no detailed description of the holotype of Pelecanimimus, which is composed of the anterior-half of an articulated skeleton. Here we report a new, detailed, revised and more accurate osteological description of its postcranial

AbstractThe Western Indian Ocean Province is reckoned for its rich marine diversity; however, sponges of the Mascarene Islands ecoregion are still poorly known. In La Réunion, only three species of class Calcarea have been registered. Hence, calcareous sponges were searched in seven sites representing various habitats of the Western coast of La Réunion, but found in only three of them. A total of 23

Exaggerated morphologies present challenges for understanding the factors that enable, prevent or compel lineages to evolve unusual functional traits. Here, I examine the case of gastropods whose adult shells are bottom heavy by virtue of a thick, often broad, convex ventral callus deposit on the inner lip and adapical to the aperture. Data on the spatial, temporal and phylogenetic distribution of

In the originally published version of this manuscript, Figure 2 appeared twice and Figure 1 was omitted. The duplicate Figure 2 has been removed and the correct Figure 1 reinstated.

We present the first multigene phylogeny focused on Eristalinae (Diptera: Syrphidae) utilizing a dataset containing 120 flower fly species from across all four subfamilies and representing 13 out of 16 tribes. Eight genes were used in the construction of the phylogeny: mitochondrial cytochrome c oxidase subunit I and the nuclear genes 28S ribosomal DNA, Alanylt RNA Synthetase, the carbamoyl phosphate