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Variational methods for a singular SPDE yielding the universality of the magnetization ripple Comm. Pure Appl. Math. (IF 2.774) Pub Date : 2023-06-02 Radu Ignat, Felix Otto, Tobias Ried, Pavlos Tsatsoulis
The magnetization ripple is a microstructure formed in thin ferromagnetic films. It can be described by minimizers of a nonconvex energy functional leading to a nonlocal and nonlinear elliptic SPDE in two dimensions driven by white noise, which is singular. We address the universal character of the magnetization ripple using variational methods based on Γ-convergence. Due to the infinite energy of
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Gut microbiota: a magical multifunctional target regulated by medicine food homology species J. Adv. Res. (IF 12.822) Pub Date : 2023-06-02 Wei-Fang Zuo, Qiwen Pang, Lai-Ping Yao, Yang Zhang, Cheng Peng, Wei Huang, Bo Han
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Novel ray of hope for diabetic wound healing: hydrogen sulfide and its releasing agents J. Adv. Res. (IF 12.822) Pub Date : 2023-05-27 Xinyi Shi, Haonan Li, Fengrui Guo, Dahong Li, Fanxing Xu
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Insights into modifiable risk factors of erectile dysfunction, a wide-angled Mendelian randomization study J. Adv. Res. (IF 12.822) Pub Date : 2023-05-25 Yang Xiong, Fuxun Zhang, Yangchang Zhang, Wei Wang, Yuxin Ran, Changjing Wu, Shiyu Zhu, Feng Qin, Jiuhong Yuan
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Genomic loci associated with leaf abscission contribute to machine picking and environmental adaptability in upland cotton (Gossypium hirsutum L.) J. Adv. Res. (IF 12.822) Pub Date : 2023-05-24 Hongge Li, Xiangru Wang, Ning Qin, Daowu Hu, Yinhua Jia, Gaofei Sun, Liangrong He, Hengheng Zhang, Panhong Dai, Zhen Peng, Nianchang Pang, Zhaoe Pan, Xiaomeng Zhang, Qiang Dong, Baojun Chen, Huiping Gui, Baoyin Pang, Xiling Zhang, Shoupu He, Meizhen Song, Xiongming Du
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Zearalenone-14-Glucoside Specifically Promotes Dysplasia of Gut-Associated Lymphoid Tissue: A Natural Product for Constructing Intestinal Nodular Lymphatic Hyperplasia Model J. Adv. Res. (IF 12.822) Pub Date : 2023-05-23 Haonan Ruan, Yunyun Wang, Jing Zhang, Ying Huang, Yanan Yang, Chongming Wu, Mengyue Guo, Jiaoyang Luo, Meihua Yang
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J-shaped Association Between LDL Cholesterol and Cardiovascular Events: A Longitudinal Primary Prevention Cohort of over 2.4 Million People Nationwide J. Adv. Res. (IF 12.822) Pub Date : 2023-05-22 Chan Soon Park, Han-Mo Yang, Kyung-Do Han, Hee-Sun Lee, Jeehoon Kang, Jung-Kyu Han, Kyung Woo Park, Hyun-Jae Kang, Bon-Kwon Koo, Hyo-Soo Kim
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Genomics comparisons of three chromosome-level mudskipper genome assemblies reveal molecular clues for water-to-land evolution and adaptation J. Adv. Res. (IF 12.822) Pub Date : 2023-05-21 Chao Bian, Yu Huang, Ruihan Li, Pengwei Xu, Xinxin You, Yunyun Lv, Zhiqiang Ruan, Jieming Chen, Junmin Xu, Qiong Shi
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Transcriptional and translational landscape fine-tune genome annotation and explores translation control in cotton J. Adv. Res. (IF 12.822) Pub Date : 2023-05-18 Ghulam Qanmber, Qi You, Zhaoen Yang, Liqiang Fang, Zhibin Zhang, Mao Chai, Baibai Gao, Fuguang Li, Zuoren Yang
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Modulating autophagy to treat diseases: A revisited review on in silico methods J. Adv. Res. (IF 12.822) Pub Date : 2023-05-14 Lifeng Wu, Wenke Jin, Haiyang Yu, Bo Liu
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PIBF1 regulates multiple gene expression via impeding long-range chromatin interaction to drive the malignant transformation of HPV16 integration epithelial cells J. Adv. Res. (IF 12.822) Pub Date : 2023-05-13 Xiaomin Li, Ci Ren, Anni Huang, Yue Zhao, Liming Wang, Hui Shen, Chun Gao, Bingxin Chen, Tong Zhu, Jinfeng Xiong, Da Zhu, Yafei Huang, Jianlin Ding, Zan Yuan, Wencheng Ding, Hui Wang
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Low-rank tensor methods for partial differential equations Acta Numer. (IF 15.583) Pub Date : 2023-05-11 Markus Bachmayr
Low-rank tensor representations can provide highly compressed approximations of functions. These concepts, which essentially amount to generalizations of classical techniques of separation of variables, have proved to be particularly fruitful for functions of many variables. We focus here on problems where the target function is given only implicitly as the solution of a partial differential equation
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The virtual element method Acta Numer. (IF 15.583) Pub Date : 2023-05-11 Lourenço Beirão Da Veiga, Franco Brezzi, L. Donatella Marini, Alessandro Russo
The present review paper has several objectives. Its primary aim is to give an idea of the general features of virtual element methods (VEMs), which were introduced about a decade ago in the field of numerical methods for partial differential equations, in order to allow decompositions of the computational domain into polygons or polyhedra of a very general shape.Nonetheless, the paper is also addressed
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Floating-point arithmetic Acta Numer. (IF 15.583) Pub Date : 2023-05-11 Sylvie Boldo, Claude-Pierre Jeannerod, Guillaume Melquiond, Jean-Michel Muller
Floating-point numbers have an intuitive meaning when it comes to physics-based numerical computations, and they have thus become the most common way of approximating real numbers in computers. The IEEE-754 Standard has played a large part in making floating-point arithmetic ubiquitous today, by specifying its semantics in a strict yet useful way as early as 1985. In particular, floating-point operations
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Compatible finite element methods for geophysical fluid dynamics Acta Numer. (IF 15.583) Pub Date : 2023-05-11 Colin J. Cotter
This article surveys research on the application of compatible finite element methods to large-scale atmosphere and ocean simulation. Compatible finite element methods extend Arakawa’s C-grid finite difference scheme to the finite element world. They are constructed from a discrete de Rham complex, which is a sequence of finite element spaces linked by the operators of differential calculus. The use
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Control of port-Hamiltonian differential-algebraic systems and applications Acta Numer. (IF 15.583) Pub Date : 2023-05-11 Volker Mehrmann, Benjamin Unger
We discuss the modelling framework of port-Hamiltonian descriptor systems and their use in numerical simulation and control. The structure is ideal for automated network-based modelling since it is invariant under power-conserving interconnection, congruence transformations and Galerkin projection. Moreover, stability and passivity properties are easily shown. Condensed forms under orthogonal transformations
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Overcoming the timescale barrier in molecular dynamics: Transfer operators, variational principles and machine learning Acta Numer. (IF 15.583) Pub Date : 2023-05-11 Christof Schütte, Stefan Klus, Carsten Hartmann
One of the main challenges in molecular dynamics is overcoming the ‘timescale barrier’: in many realistic molecular systems, biologically important rare transitions occur on timescales that are not accessible to direct numerical simulation, even on the largest or specifically dedicated supercomputers. This article discusses how to circumvent the timescale barrier by a collection of transfer operator-based
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Linear optimization over homogeneous matrix cones Acta Numer. (IF 15.583) Pub Date : 2023-05-11 Levent Tunçel, Lieven Vandenberghe
A convex cone is homogeneous if its automorphism group acts transitively on the interior of the cone. Cones that are homogeneous and self-dual are called symmetric. Conic optimization problems over symmetric cones have been extensively studied, particularly in the literature on interior-point algorithms, and as the foundation of modelling tools for convex optimization. In this paper we consider the
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Infusion of GMSCs relieves autoimmune arthritis by suppressing the externalization of neutrophil extracellular traps via PGE2-PKA-ERK axis J. Adv. Res. (IF 12.822) Pub Date : 2023-05-09 Jun Zhao, Yan Liu, Xiaoyi Shi, Junlong Dang, Yu Liu, Siwen Li, Wei Cai, Yuluan Hou, Donglan Zeng, Ye Chen, Jia Yuan, Yiding Xiong, Wenbin Wu, Peihong Cai, Jingrong Chen, Jianbo Sun, Yimin Shao, David D. Brand, Song Guo Zheng
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Structural assessment of OsNIP2;1 highlighted critical residues defining solute specificity and functionality of NIP class aquaporins J. Adv. Res. (IF 12.822) Pub Date : 2023-05-08 Yogesh Sharma, Vandana Thakral, Gaurav Raturi, Kshatresh Dutta Dubey, Humira Sonah, Ashwani Pareek, Tilak Raj Sharma, Rupesh Deshmukh
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Physiology, Genomics, and Evolutionary Aspects of Desert Plants J. Adv. Res. (IF 12.822) Pub Date : 2023-05-07 Tapan Kumar Mohanta, Yugal Kishore Mohanta, Prashant Kaushik, Jitesh Kumar
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Book Reviews SIAM Rev. (IF 7.24) Pub Date : 2023-05-09 Volker H. Schulz
SIAM Review, Volume 65, Issue 2, Page 591-598, May 2023. We begin the section with Alexander Mamonov's review on the book An Introduction to the Mathematical Theory of Inverse Problems, written by Andreas Kirsch. Our reviewer describes it as a classic in the field of inverse problems and recommends it to all readers inclined to the theory and solution of inverse problems. The next review discusses
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A Comprehensive Proof of Bertrand's Theorem SIAM Rev. (IF 7.24) Pub Date : 2023-05-09 Patrick De Leenheer, John Musgrove, Tyler Schimleck
SIAM Review, Volume 65, Issue 2, Page 563-588, May 2023. A cornerstone result in Newtonian mechanics is Bertrand's Theorem concerning the behavior of the solutions of the classical two-body problem. It states that among all possible gravitational laws there are only two exhibiting the property that all bounded orbits are closed. One of these is Newtonian gravitation, the other being Hookean gravitation
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Nesterov's Method for Convex Optimization SIAM Rev. (IF 7.24) Pub Date : 2023-05-09 Noel J. Walkington
SIAM Review, Volume 65, Issue 2, Page 539-562, May 2023. While Nesterov's algorithm for computing the minimum of a convex function is now over forty years old, it is rarely presented in texts for a first course in optimization. This is unfortunate since for many problems this algorithm is superior to the ubiquitous steepest descent algorithm, and it is equally simple to implement. This article presents
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Education SIAM Rev. (IF 7.24) Pub Date : 2023-05-09 Hélène Frankowska
SIAM Review, Volume 65, Issue 2, Page 537-537, May 2023. The Education section in this issue presents two contributions. In `"Nesterov's Method for Convex Optimization," Noel J. Walkington proposes a teaching guide for a first course in optimization of this well-known algorithm for computing the minimum of a convex function. This algorithm, first proposed in 1983 by Yuri Nesterov, though well recognized
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Nonlinear Perron--Frobenius Theorems for Nonnegative Tensors SIAM Rev. (IF 7.24) Pub Date : 2023-05-09 Antoine Gautier, Francesco Tudisco, Matthias Hein
SIAM Review, Volume 65, Issue 2, Page 495-536, May 2023. We present a unifying Perron--Frobenius theory for nonlinear spectral problems defined in terms of nonnegative tensors. By using the concept of tensor shape partition, our results include, as a special case, a wide variety of particular tensor spectral problems considered in the literature and can be applied to a broad set of problems involving
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SIGEST SIAM Rev. (IF 7.24) Pub Date : 2023-05-09 The Editors
SIAM Review, Volume 65, Issue 2, Page 493-493, May 2023. The SIGEST article in this issue is “Nonlinear Perron--Frobenius Theorems for Nonnegative Tensors,” by Antoine Gautier, Francesco Tudisco, and Matthias Hein. Most computational and applied mathematicians will be aware of the results that Perron published in 1907 about the eigensystems of positive matrices, which were then extended by Frobenius
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The Role of Directionality, Heterogeneity, and Correlations in Epidemic Risk and Spread SIAM Rev. (IF 7.24) Pub Date : 2023-05-09 Antoine Allard, Cristopher Moore, Samuel V. Scarpino, Benjamin M. Althouse, Laurent Hébert-Dufresne
SIAM Review, Volume 65, Issue 2, Page 471-492, May 2023. Most models of epidemic spread, including many designed specifically for COVID-19, implicitly assume mass-action contact patterns and undirected contact networks, meaning that the individuals most likely to spread the disease are also the most at risk of contracting it from others. Here, we review results from the theory of random directed graphs
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Contour Integral Methods for Nonlinear Eigenvalue Problems: A Systems Theoretic Approach SIAM Rev. (IF 7.24) Pub Date : 2023-05-09 Michael C. Brennan, Mark Embree, Serkan Gugercin
SIAM Review, Volume 65, Issue 2, Page 439-470, May 2023. Contour integral methods for eigenvalue problems seek to compute a subset of the spectrum in a bounded region of the complex plane. We briefly survey this class of algorithms, establishing a relationship to system realization and rational interpolation techniques in control theory. This connection casts contour integral methods for linear and
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Research Spotlights SIAM Rev. (IF 7.24) Pub Date : 2023-05-09 Stefan M. Wild
SIAM Review, Volume 65, Issue 2, Page 437-437, May 2023. As highlighted by Tisseur and Meerbergen in SIAM Review, 43 (2001), pp. 235--286, nonlinear eigenvalue problems arise in diverse applications such as acoustics of high-speed trains, the study of elastic materials, fluid mechanical control, and pedestrian-induced structural vibrations. In this issue's first Research Spotlights article, “Contour
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Proximal Splitting Algorithms for Convex Optimization: A Tour of Recent Advances, with New Twists SIAM Rev. (IF 7.24) Pub Date : 2023-05-09 Laurent Condat, Daichi Kitahara, Andrés Contreras, Akira Hirabayashi
SIAM Review, Volume 65, Issue 2, Page 375-435, May 2023. Convex nonsmooth optimization problems, whose solutions live in very high dimensional spaces, have become ubiquitous. To solve them, the class of first-order algorithms known as proximal splitting algorithms is particularly adequate: they consist of simple operations, handling the terms in the objective function separately. In this overview,
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Hawkes Processes Modeling, Inference, and Control: An Overview SIAM Rev. (IF 7.24) Pub Date : 2023-05-09 Rafael Lima
SIAM Review, Volume 65, Issue 2, Page 331-374, May 2023. Hawkes processes are a type of point process that models self-excitement among time events. They have been used in a myriad of applications, ranging from finance and earthquakes to crime rates and social network activity analysis. Recently, a variety of different tools and algorithms have been presented at top-tier machine learning conferences
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Survey and Review SIAM Rev. (IF 7.24) Pub Date : 2023-05-09 Marlis Hochbruck
SIAM Review, Volume 65, Issue 2, Page 329-329, May 2023. A point process is called self-exciting if the arrival of an event increases the probability of similar events for some period of time. Typical examples include earthquakes, which frequently cause aftershocks due to increased geological tension in their region; raised intrusion rates in the vicinity of a burglary; retweets in social media incited
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Immunoregulation in cancer-associated cachexia J. Adv. Res. (IF 12.822) Pub Date : 2023-05-06 Qi Wu, Zhou Liu, Bei Li, Yu-e Liu, Ping Wang
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Join the green team: inducers of plant immunity in the plant disease sustainable control toolbox J. Adv. Res. (IF 12.822) Pub Date : 2023-05-02 Feng Zhu, Meng-Yao Cao, Qi-Ping Zhang, Rajinikanth Mohan, Jacob Schar, Michaela Mitchell, Huan Chen, Fengquan Liu, Daowen Wang, Zheng Qing Fu
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Two mutations at KRT74 and EDAR synergistically drive the fine-wool production in Chinese sheep J. Adv. Res. (IF 12.822) Pub Date : 2023-05-01 Benmeng Liang, Tianyou Bai, Yuhetian Zhao, Jiangang Han, Xiaohong He, Yabin Pu, Chunxin Wang, Wujun Liu, Qing Ma, Kechuan Tian, Wenxin Zheng, Nan Liu, Jianfeng Liu, Yuehui Ma, Lin Jiang
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Antimicrobial activities of lavandulylated flavonoids in Sophora flavences against methicillin-resistant Staphylococcus aureus via membrane disruption J. Adv. Res. (IF 12.822) Pub Date : 2023-05-01 Zebin Weng, Fei Zeng, Minxin Wang, Sheng Guo, Zhijuan Tang, Kiyoshi Itagaki, Yajuan Lin, Xinchun Shen, Yaqi Cao, Jin-ao Duan, Fang Wang
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Hypothesis testing for matched pairs with missing data by maximum mean discrepancy: An application to continuous glucose monitoring Am. Stat. (IF 8.325) Pub Date : 2023-04-27 Marcos Matabuena, Paulo Félix, Marc Ditzhaus, Juan Vidal, Francisco Gude
Abstract A frequent problem in statistical science is how to properly handle missing data in matched paired observations. There is a large body of literature coping with the univariate case. Yet, the ongoing technological progress in measuring biological systems raises the need for addressing more complex data, e.g., graphs, strings, and probability distributions. To fill this gap, this paper proposes
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Comment on “A Case for Nonparametrics” by Bower et al. Am. Stat. (IF 8.325) Pub Date : 2023-04-24 Kenneth Rice, Thomas Lumley
Published in The American Statistician (Vol. 77, No. 2, 2023)
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A Response to Rice and Lumley Am. Stat. (IF 8.325) Pub Date : 2023-04-24 Roy Bower, William Cipolli III
We recognize the careful reading of and thought-provoking commentary on our work by Rice and Lumley. Further, we appreciate the opportunity to respond and clarify our position regarding the three presented concerns. We address these points in three sections below and conclude with final remarks in Section 4.
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Graph Sampling Am. Stat. (IF 8.325) Pub Date : 2023-04-24 Jae-Kwang Kim
Published in The American Statistician (Vol. 77, No. 2, 2023)
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Handbook of Multiple Comparisons Am. Stat. (IF 8.325) Pub Date : 2023-04-24 Junyong Park
Published in The American Statistician (Vol. 77, No. 2, 2023)
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Long-Time Instability of the Couette Flow in Low Gevrey Spaces Comm. Pure Appl. Math. (IF 2.774) Pub Date : 2023-04-24 Yu Deng, Nader Masmoudi
We prove the instability of the Couette flow if the disturbances is less smooth than the Gevrey space of class 2. This shows that this is the critical regularity for this problem since it was proved in [5] that stability and inviscid damping hold for disturbances which are smoother than the Gevrey space of class 2. A big novelty is that this critical space is due to an instability mechanism which is
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The exoprotein Gbp of Fusobacterium nucleatum promotes THP-1 cell lipid deposition by binding to CypA and activating PI3K-AKT/MAPK/NF-κB pathways J. Adv. Res. (IF 12.822) Pub Date : 2023-04-24 Song Shen, Tianyong Sun, Xiangjiu Ding, Xiufeng Gu, Yushang Wang, Xiaomei Ma, Zixuan Li, Haiting Gao, Shaohua Ge, Qiang Feng
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The miR-7/EGFR axis controls the epithelial cell immunomodulation and regeneration and orchestrates the pathology in inflammatory bowel disease J. Adv. Res. (IF 12.822) Pub Date : 2023-04-23 Juanjuan Zhao, Mengmeng Guo, Yaping Yan, Ya Wang, Xu Zhao, Jing Yang, Jing Chen, Chao Chen, Lin Tang, Wenhuan Zeng, Yiting Liu, Ming Qin, Ya Zhou, Lin Xu
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Tumor-infiltrating mast cells stimulate ICOS+ regulatory T cells through an IL-33 and IL-2 axis to promote gastric cancer progression J. Adv. Res. (IF 12.822) Pub Date : 2023-04-20 Yipin Lv, Wenqing Tian, Yongsheng Teng, Pan Wang, Yongliang Zhao, Zhengyan Li, Shanhong Tang, Weisan Chen, Rui Xie, Muhan Lü, Yuan Zhuang
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Dietary neoagarotetraose extends lifespan and impedes brain aging in mice via regulation of microbiota-gut-brain axis J. Adv. Res. (IF 12.822) Pub Date : 2023-04-20 Tao Li, Shaoqing Yang, Xiaoyan Liu, Yanxiao Li, Zhenglong Gu, Zhengqiang Jiang
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Response to Comment by Schilling Am. Stat. (IF 8.325) Pub Date : 2023-04-20 Jay Bartroff, Gary Lorden, Lijia Wang
Published in The American Statistician (Just accepted, 2023)
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Distribution-Free Location-Scale Regression Am. Stat. (IF 8.325) Pub Date : 2023-04-19 Sandra Siegfried, Lucas Kook, Torsten Hothorn
Abstract We introduce a generalized additive model for location, scale, and shape (GAMLSS) next of kin aiming at distribution-free and parsimonious regression modelling for arbitrary outcomes. We replace the strict parametric distribution formulating such a model by a transformation function, which in turn is estimated from data. Doing so not only makes the model distribution-free but also allows to
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Suppression of hepatocellular carcinoma by Ulva lactuca ulvan via gut microbiota and metabolite interactions J. Adv. Res. (IF 12.822) Pub Date : 2023-04-17 Yinghui Qiu, Jingxiang Xu, Wei Liao, Yuxi Wen, Shiyue Jiang, Jiahui Wen, Chao Zhao
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Environmental viromes reveal the global distribution signatures of deep-sea DNA viruses J. Adv. Res. (IF 12.822) Pub Date : 2023-04-17 Tianliang He, Min Jin, Pei Cui, Xumei Sun, Xuebao He, Yaqin Huang, Xi Xiao, Tingting Zhang, Xiaobo Zhang
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Disturbances of purine and lipid metabolism in the microbiota-gut-brain axis in male adolescent nonhuman primates with depressive-like behaviors J. Adv. Res. (IF 12.822) Pub Date : 2023-04-15 Teng Teng, Gerard Clarke, Jing Wu, Qingyuan Wu, Michael Maes, Jie Wang, Hongyan Wu, Bangmin Yin, Yuanliang Jiang, Xuemei Li, Xueer Liu, Ying Han, Jinlin Song, Xin Jin, Ping Ji, Yi Guo, Xinyu Zhou, Peng Xie
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Targeting benign prostate hyperplasia treatments: AR/TGF-β/NOX4 inhibition by apocynin suppresses inflammation and proliferation J. Adv. Res. (IF 12.822) Pub Date : 2023-04-14 Bo-Ram Jin, Hyo-Jung Kim, Jung-Hyun Na, Won-Kyu Lee, Hyo-Jin An
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ENOX2 inhibition enhances infiltration of effector memory T-cell and mediates response to chemotherapy in immune-quiescent cancer J. Adv. Res. (IF 12.822) Pub Date : 2023-04-13 Ngar-Woon Kam, Olivier Laczka, Xiang Li, John Wilkinson, Desmond Hung, Syrus Pak Hei Lai, Ka Chun Wu, Tsao Sai-Wa, Wei Dai, Che Chi Ming, Victor Ho-Fun Lee, Dora Lai-Wan Kwong
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Fusobacterium nucleatum outer membrane vesicles activate autophagy to promote oral cancer metastasis J. Adv. Res. (IF 12.822) Pub Date : 2023-04-13 Gang Chen, Chunna Gao, Shan Jiang, Qiaoling Cai, Rongrong Li, Qiang Sun, Can Xiao, Yubo Xu, Buling Wu, Hongwei Zhou
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Potential nutritional strategies to prevent and reverse sarcopenia in aging process: role of fish oil-derived ω-3 polyunsaturated fatty acids, wheat oligopeptide and their combined intervention J. Adv. Res. (IF 12.822) Pub Date : 2023-04-13 Da Pan, Ligang Yang, Xian Yang, Dengfeng Xu, Shaokang Wang, Han Gao, Hechun Liu, Hui Xia, Chao Yang, Yifei Lu, Jihan Sun, Yuanyuan Wang, Guiju Sun
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Effect of anisotropy on deformation and crack formation under the brittle removal of 6H-SiC during SPDT process J. Adv. Res. (IF 12.822) Pub Date : 2023-04-13 Binbin Meng, Chen Li
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Environmental viromes reveal global virosphere of deep-sea sediment RNA viruses J. Adv. Res. (IF 12.822) Pub Date : 2023-04-11 Xinyi Zhang, Haitao Wan, Min Jin, Liquan Huang, Xiaobo Zhang