-
An all-atom molecular dynamics study of the anti-interferon signaling of Ebola virus: interaction mechanisms of EBOV VP24 binding to Karyopherin alpha5. Mol. Biosyst. Pub Date : 2017-04-19 Jing-Na Ding,Yan-Jun Zhang,Hui Zhong,Cheng-Cheng Ao,Jing Li,Ju-Guang Han
Ebola virus (EBOV) is highly lethal due to virally encoded immune antagonists, and the combination of EBOV VP24 with karyopherin alpha (KPNA) will trigger anti-interferon (IFN) signaling. The crystal structure of VP24-KPNA5 has been proposed in recent studies, but the precise binding mechanisms are still unclear. In order to explore the VP24-KPNA5 protein binding micro-mechanisms, Molecular Dynamic
-
A structural bioinformatics investigation on protein-DNA complexes delineates their modes of interaction. Mol. Biosyst. Pub Date : 2017-04-19 Simone Gardini,Simone Furini,Annalisa Santucci,Neri Niccolai
The lifetimes of protein-DNA adducts are strictly related to the various protein functions. This feature must be encoded by the amino acids located at the protein-DNA interface. The large number of structurally characterized protein-DNA complexes now available from the Protein Data Bank (PDB) allows extensive structural bioinformatics investigations on protein-DNA interfaces. The modes of protein binding
-
Correction: Dynamic properties of dipeptidyl peptidase III from Bacteroides thetaiotaomicron and the structural basis for its substrate specificity – a computational study Mol. Biosyst. Pub Date : 2017-11-13 M. Tomin,S. Tomić
Correction for ‘Dynamic properties of dipeptidyl peptidase III from Bacteroides thetaiotaomicron and the structural basis for its substrate specificity – a computational study’ by M. Tomin et al., Mol. BioSyst., 2017, 13, 2407–2417.
-
Pharmacology of predatory and defensive venom peptides in cone snails Mol. Biosyst. Pub Date : 2017-11-01 Jutty Rajan Prashanth,Sebastien Dutertre,Richard James Lewis
-
Staphylococcus aureus extracellular vesicles (EVs): surface-binding antagonists of biofilm formation Mol. Biosyst. Pub Date : 2017-10-30 Hansol Im,Sujin Lee,Steven A. Soper,Robert J. Mitchell
-
Mechanism of the formation of the RecA–ssDNA nucleoprotein filament structure: a coarse-grained approach Mol. Biosyst. Pub Date : 2017-10-27 Goutam Mukherjee,Arumay Pal,Yaakov Levy
-
Conformational heterogeneity in tails of DNA-binding proteins is augmented by proline containing repeats Mol. Biosyst. Pub Date : 2017-10-26 Harshavardhan Khare,Debayan Dey,Chilakapati Madhu,Dillip Senapati,Srinivasarao Raghothama,Thimmaiah Govindaraju,Suryanarayanarao Ramakumar
-
Imbalance in amino acid and purine metabolisms at the hypothalamus in inflammation-associated depression by GC-MS Mol. Biosyst. Pub Date : 2017-10-25 Yu Wu,Yonghong Li,Yanjuan Jia,Chaojun Wei,Hui Xu,Rui Guo,Yuanting Li,Jing Jia,Xiaoming Qi,Xiaoling Gao
-
Development of an AlphaLISA high throughput technique to screen for small molecule inhibitors targeting protein arginine methyltransferases Mol. Biosyst. Pub Date : 2017-10-25 Lakshmi Prabhu,Lan Chen,Han Wei,Özlem Demir,Ahmad Safa,Lifan Zeng,Rommie E. Amaro,Bert H. O’Neil,Zhon-Yin Zhang,Tao Lu
-
Host immune evasion strategies of malaria blood stage parasite Mol. Biosyst. Pub Date : 2017-10-23 Xue Yan Yam,Peter R. Preiser
-
An interaction network approach to study the correlation between endocrine disrupting chemicals and breast cancer Mol. Biosyst. Pub Date : 2017-10-20 Andrea Polo,Chiara Nittoli,Anna Crispo,Teresa Langastro,Stefania Cocco,Lorella Severino,Michelino De Laurentiis,Gennaro Ciliberto,Maurizio Montella,Alfredo Budillon,Susan Costantini
-
Model system based proteomics to understand the host response during bacterial infections Mol. Biosyst. Pub Date : 2017-10-19 Arumugam Kamaladevi,Shanmugam Marudhupandiyan,Krishnaswamy Balamurugan
-
The nucleosomal surface is the main target of histone ADP-ribosylation in response to DNA damage Mol. Biosyst. Pub Date : 2017-10-16 Kelly R. Karch,Marie-France Langelier,John M. Pascal,Benjamin A. Garcia
-
Methods for monitoring and measurement of protein translation in time and space Mol. Biosyst. Pub Date : 2017-10-12 Maria Dermit,Martin Dodel,Faraz K. Mardakheh
-
Prediction of drug–pathway interaction pairs with a disease-combined LSA-PU-KNN method Mol. Biosyst. Pub Date : 2017-10-12 Fan-Shu Chen,Hui-Yan Jiang,Zhenran Jiang
-
Insights into human intrinsically disordered proteins from their gene expression profile Mol. Biosyst. Pub Date : 2017-10-11 Arup Panda,Debarun Acharya,Tapash Chandra Ghosh
-
Pre-steady-state kinetic analysis of damage recognition by human single-strand selective monofunctional uracil-DNA glycosylase SMUG1 Mol. Biosyst. Pub Date : 2017-10-11 Alexandra A. Kuznetsova,Danila A. Iakovlev,Inna V. Misovets,Alexander A. Ishchenko,Murat K. Saparbaev,Nikita A. Kuznetsov,Olga S. Fedorova
-
MicroRNA-590-5p regulates cell viability, apoptosis, migration and invasion of renal cell carcinoma cell lines through targeting ARHGAP24 Mol. Biosyst. Pub Date : 2017-10-11 Lei Wang,Wan-qing Wei,Zi-yu Wu,Gong-cheng Wang
-
NARRMDA: negative-aware and rating-based recommendation algorithm for miRNA–disease association prediction Mol. Biosyst. Pub Date : 2017-10-11 Lihong Peng,Yeqing Chen,Ning Ma,Xing Chen
-
Molecular dynamics simulations of β2-microglobulin interaction with hydrophobic surfaces Mol. Biosyst. Pub Date : 2017-10-09 Cedrix J. Dongmo Foumthuim,Alessandra Corazza,Gennaro Esposito,Federico Fogolari
-
Exploring the role of GS–GOGAT cycle in microcystin synthesis and regulation – a model based analysis Mol. Biosyst. Pub Date : 2017-10-05 Swarnendu Banerjee,Abhishek Subramanian,Joydev Chattopadhyay,Ram Rup Sarkar
-
A Bayesian approach for estimating protein–protein interactions by integrating structural and non-structural biological data Mol. Biosyst. Pub Date : 2017-10-05 Hafeez Ur Rehman,Inam Bari,Anwar Ali,Haroon Mahmood
-
Protein–protein interaction networks as a new perspective to evaluate distinct functional roles of voltage-dependent anion channel isoforms Mol. Biosyst. Pub Date : 2017-10-04 Marianna Caterino,Margherita Ruoppolo,Annalisa Mandola,Michele Costanzo,Stefania Orrù,Esther Imperlini
-
Hybrid deterministic/stochastic simulation of complex biochemical systems Mol. Biosyst. Pub Date : 2017-09-29 Paola Lecca,Fabio Bagagiolo,Marina Scarpa
-
Evaluation and optimization of reduction and alkylation methods to maximize peptide identification with MS-based proteomics Mol. Biosyst. Pub Date : 2017-09-20 Suttipong Suttapitugsakul,Haopeng Xiao,Johanna Smeekens,Ronghu Wu
-
Role of solvent properties of water in crowding effects induced by macromolecular agents and osmolytes Mol. Biosyst. Pub Date : 2017-09-20 L. A. Ferreira,V. N. Uversky,B. Y. Zaslavsky
-
Computational identification of protein S-sulfenylation sites by incorporating the multiple sequence features information Mol. Biosyst. Pub Date : 2017-09-18 Md. Mehedi Hasan,Dianjing Guo,Hiroyuki Kurata
-
Hedgehog-mesenchyme gene signature identifies bi-modal prognosis in luminal and basal breast cancer sub-types Mol. Biosyst. Pub Date : 2017-09-07 Wandaliz Torres-García,Maribella Domenech
-
Correction: Dynamic properties of dipeptidyl peptidase III from Bacteroides thetaiotaomicron and the structural basis for its substrate specificity – a computational study Mol. Biosyst. Pub Date : 2017-11-13 M. Tomin,S. Tomić
Correction for ‘Dynamic properties of dipeptidyl peptidase III from Bacteroides thetaiotaomicron and the structural basis for its substrate specificity – a computational study’ by M. Tomin et al., Mol. BioSyst., 2017, 13, 2407–2417.
-
Imbalance in amino acid and purine metabolisms at the hypothalamus in inflammation-associated depression by GC-MS Mol. Biosyst. Pub Date : 2017-10-25 Yu Wu,Yonghong Li,Yanjuan Jia,Chaojun Wei,Hui Xu,Rui Guo,Yuanting Li,Jing Jia,Xiaoming Qi,Xiaoling Gao
-
Staphylococcus aureus extracellular vesicles (EVs): surface-binding antagonists of biofilm formation Mol. Biosyst. Pub Date : 2017-10-30 Hansol Im,Sujin Lee,Steven A. Soper,Robert J. Mitchell
-
Mechanism of the formation of the RecA–ssDNA nucleoprotein filament structure: a coarse-grained approach Mol. Biosyst. Pub Date : 2017-10-27 Goutam Mukherjee,Arumay Pal,Yaakov Levy
-
Conformational heterogeneity in tails of DNA-binding proteins is augmented by proline containing repeats Mol. Biosyst. Pub Date : 2017-10-26 Harshavardhan Khare,Debayan Dey,Chilakapati Madhu,Dillip Senapati,Srinivasarao Raghothama,Thimmaiah Govindaraju,Suryanarayanarao Ramakumar
-
Development of an AlphaLISA high throughput technique to screen for small molecule inhibitors targeting protein arginine methyltransferases Mol. Biosyst. Pub Date : 2017-10-25 Lakshmi Prabhu,Lan Chen,Han Wei,Özlem Demir,Ahmad Safa,Lifan Zeng,Rommie E. Amaro,Bert H. O’Neil,Zhon-Yin Zhang,Tao Lu
-
Pharmacology of predatory and defensive venom peptides in cone snails Mol. Biosyst. Pub Date : 2017-11-01 Jutty Rajan Prashanth,Sebastien Dutertre,Richard James Lewis
-
Host immune evasion strategies of malaria blood stage parasite Mol. Biosyst. Pub Date : 2017-10-23 Xue Yan Yam,Peter R. Preiser
-
Model system based proteomics to understand the host response during bacterial infections Mol. Biosyst. Pub Date : 2017-10-19 Arumugam Kamaladevi,Shanmugam Marudhupandiyan,Krishnaswamy Balamurugan
-
An interaction network approach to study the correlation between endocrine disrupting chemicals and breast cancer Mol. Biosyst. Pub Date : 2017-10-20 Andrea Polo,Chiara Nittoli,Anna Crispo,Teresa Langastro,Stefania Cocco,Lorella Severino,Michelino De Laurentiis,Gennaro Ciliberto,Maurizio Montella,Alfredo Budillon,Susan Costantini
-
The Henipavirus V protein is a prevalently unfolded protein with a zinc-finger domain involved in binding to DDB1 Mol. Biosyst. Pub Date : 2017-09-26 Edoardo Salladini,Vincent Delauzun,Sonia Longhi
-
PANDAR: a pivotal cancer-related long non-coding RNA in human cancers Mol. Biosyst. Pub Date : 2017-09-26 Jinglin Li,Zhenglong Li,Wangyang Zheng,Xinheng Li,Zhidong Wang,Yunfu Cui,Xingming Jiang
-
A computational method using differential gene expression to predict altered metabolism of multicellular organisms Mol. Biosyst. Pub Date : 2017-09-22 Lvxing Zhu,Haoran Zheng,Xinying Hu,Yang Xu
-
Lipidomic alterations of in vitro macrophage infection by L. infantum and L. amazonensis Mol. Biosyst. Pub Date : 2017-09-20 Fernanda Negrão,Daniel R. Abánades,Caroline F. Jaeeger,Daniele F. O. Rocha,Katia R. A. Belaz,Selma Giorgio,Marcos N. Eberlin,Célio F. F. Angolini
-
Modelling the propagation of a dynamical signature in gene expression mediated by the transport of extracellular microRNAs Mol. Biosyst. Pub Date : 2017-09-18 Alexis Grau Ribes,Yannick De Decker,Claude Gérard,Laurence Rongy
-
HIV/HAART-associated oxidative stress is detectable by metabonomics Mol. Biosyst. Pub Date : 2017-09-18 Aurelia A. Williams,Lungile J. Sitole,Debra Meyer
-
Imperfect crowding adaptation of mammalian cells towards osmotic stress and its modulation by osmolytes Mol. Biosyst. Pub Date : 2017-09-14 David Gnutt,Oliver Brylski,Eugen Edengeiser,Martina Havenith,Simon Ebbinghaus
-
Metabolomics reveal mitochondrial and fatty acid metabolism disorders that contribute to the development of DKD in T2DM patients Mol. Biosyst. Pub Date : 2017-09-14 Ling Li,Chengshi Wang,Hongliu Yang,Shuyun Liu,Yanrong Lu,Ping Fu,Jingping Liu
-
Screening for concanavalin A binders from a mannose-modified α-helix peptide phage library Mol. Biosyst. Pub Date : 2017-09-13 Iou Ven Chang,Hiroshi Tsutsumi,Hisakazu Mihara
-
-
Gene co-opening network deciphers gene functional relationships Mol. Biosyst. Pub Date : 2017-09-12 Wenran Li,Meng Wang,Jinghao Sun,Yong Wang,Rui Jiang
-
Identification of a suitable promoter for the sigma factor of Mycobacterium tuberculosis Mol. Biosyst. Pub Date : 2017-09-12 A. Mallick Gupta,S. Mukherjee,A. Dutta,J. Mukhopadhyay,D. Bhattacharyya,S. Mandal
-
-
Methylglyoxal attenuates insulin signaling and downregulates the enzymes involved in cholesterol biosynthesis Mol. Biosyst. Pub Date : 2017-09-07 Arati B. Deshmukh,Shakuntala Bai,Aarthy T.,Rubina S. Kazi,Reema Banarjee,Rajeshwari Rathore,Vijayakumar MV,Thulasiram HV,Manoj Kumar Bhat,Kulkarni MJ
-
Computational study on the origin of the cancer immunotherapeutic potential of B and T cell epitope peptides Mol. Biosyst. Pub Date : 2017-09-07 Hao Li,Nalini Schaduangrat,Saw Simeon,Chanin Nantasenamat
-
A novel method for identifying potential disease-related miRNAs via a disease–miRNA–target heterogeneous network Mol. Biosyst. Pub Date : 2017-09-05 Liang Ding,Minghui Wang,Dongdong Sun,Ao Li
-
Real-time activity assays of β-lactamases in living bacterial cells: application to the inhibition of antibiotic-resistant E. coli strains Mol. Biosyst. Pub Date : 2017-09-04 Ying Ge,Ya-Jun Zhou,Ke-Wu Yang,Yi-Lin Zhang,Yang Xiang,Yue-Juan Zhang
-
Investigation of a common gene expression signature in gastrointestinal cancers using systems biology approaches Mol. Biosyst. Pub Date : 2017-09-04 Kaveh Baghaei,Nazanin Hosseinkhan,Hamid Asadzadeh Aghdaei,M. R. Zali
-
Long non-coding RNA SNHG17 is an unfavourable prognostic factor and promotes cell proliferation by epigenetically silencing P57 in colorectal cancer Mol. Biosyst. Pub Date : 2017-08-31 Zhonghua Ma,Shengying Gu,Min Song,Changsheng Yan,Bingqing Hui,Hao Ji,Jirong Wang,Jianping Zhang,Keming Wang,Qinghong Zhao
-
CarSite: identifying carbonylated sites of human proteins based on a one-sided selection resampling method Mol. Biosyst. Pub Date : 2017-08-31 Yun Zuo,Cang-Zhi Jia
-
Mass spectrometry based identification of galectin-3 interacting proteins potentially involved in lung melanoma metastasis Mol. Biosyst. Pub Date : 2017-08-25 Manohar C. Dange,Hemangi S. Bhonsle,Rashmi K. Godbole,Shyam K. More,Sanjay M. Bane,Mahesh J. Kulkarni,Rajiv D. Kalraiya
-