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Streptomyces endocoffeicus sp. nov., an endophytic actinomycete isolated from Coffea arabica (L.)
Antonie van Leeuwenhoek ( IF 2.6 ) Pub Date : 2021-09-04 , DOI: 10.1007/s10482-021-01648-x
Achararak Nammali 1 , Chakapong Intaraudom 2 , Pattama Pittayakhajonwut 2 , Chanwit Suriyachadkun 3 , Sarin Tadtong 4 , Somboon Tanasupawat 5 , Chitti Thawai 1, 6
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An aerobic, non-motile, Gram-stain positive actinomycete, designated strain CA3R110T, was isolated from the surface-sterilised root of Coffea arabica L. collected from Lampang Province, Thailand. 16S rRNA gene sequence analysis indicated that strain CA3R110T was a member of the genus Streptomyces and showed the closest similarities to Streptomyces buecherae AC541T (99.2%), followed by Streptomyces rapamycinicus NRRL B-5491T (99.1%), Streptomyces luteoverticillatus NBRC 3840T (99.1%), Streptomyces coerulescens NBRC 12758T (99.1%), and Streptomyces iranensis HM 35T (99.0%). Strain CA3R110T contained LL-diaminopimelic acid in cell peptidoglycan, MK-9(H6), and MK-9(H8) as major menaquinone, iso-C16:0, iso-C15:0, C16:0 as major fatty acids. Diphosphatidylglycerol, phosphatidylethanolamine, hydroxy-phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositolmannoside were detected in the cell. The chemotaxonomic characteristics possessed the typical properties of the genus Streptomyces. A low digital DNA–DNA hybridization (< 55.7%) and average nucleotide identity-blast (ANIb) (< 92.2%) values revealed that strain CA3R110T could be distinguished from any known Streptomyces species. With the differences in phenotypic and genotypic data, strain CA3R110T represents a novel species of genus Streptomyces, for which the name Streptomyces endocoffeicus sp. nov. is proposed. The type strain is CA3R110T (= TBRC 11245T = NBRC 114296T).



中文翻译:

内科咖啡链霉菌属。nov.,一种从小粒咖啡 (L.) 中分离的内生放线菌

从泰国南邦省收集的阿拉比卡咖啡表面灭菌根中分离出一种需氧、非运动性、革兰氏染色阳性放线菌,命名为 CA3R110 T菌株。16S rRNA基因序列分析表明菌株CA3R110 Ť是属的成员链霉菌和显示最接近的相似性链霉菌buecherae AC541 Ť(99.2%),其次是链霉菌rapamycinicus NRRL B-5491 Ť(99.1%),链霉菌属luteoverticillatus NBRC 3840 T (99.1%),蓝斑链霉菌NBRC 12758 T(99.1%) 和伊朗链霉菌HM 35 T (99.0%)。菌株 CA3R110 T在细胞肽聚糖中含有LL-二氨基庚二酸、MK-9(H 6 ) 和 MK-9(H 8 ) 作为主要甲基萘醌、iso -C 16:0、 iso -C 15:0、 C 16:0作为主要的脂肪酸。在细胞中检测到二磷脂酰甘油、磷脂酰乙醇胺、羟基磷脂酰乙醇胺、磷脂酰甘油、磷脂酰肌醇、磷脂酰肌醇甘露糖苷。化学分类特征具有链霉菌属的典型特性. 低数字 DNA-DNA 杂交 (<55.7%) 和平均核苷酸同一性爆炸 (ANIb) (<92.2%) 值表明菌株 CA3R110 T可以与任何已知的链霉菌属物种区分开来。由于表型和基因型数据的差异,菌株 CA3R110 T代表了Streptomyces属的一个新物种,其名称为Streptomyces endocoffeicus sp。十一月 被提议。类型菌株是 CA3R110 T (= TBRC 11245 T  = NBRC 114296 T )。

更新日期:2021-09-04
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