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Complete genome sequence of a novel lytic phage infecting Aeromonas hydrophila, an infectious agent in striped catfish (Pangasianodon hypophthalmus).
Archives of Virology ( IF 2.5 ) Pub Date : 2020-09-04 , DOI: 10.1007/s00705-020-04793-2
Vinh Q Tu 1, 2 , Tan-Trung Nguyen 1, 2, 3 , Xuan T T Tran 1, 2 , Andrew D Millard 4 , Huyen T Phan 1, 2 , Nga P Le 1, 2 , Oanh T H Dang 5 , Hoang A Hoang 1, 2
Affiliation  

The bacteriophage vB_AhM_PVN02 (PVN02), infecting Aeromonas hydrophila, was isolated from a striped catfish pond water sample in Can Tho City, Vietnam. The phage had high lytic activity with a latent period and burst size of approximately 20 min and 105 plaque-forming units per cell, respectively. Observation of the phage by transmission electron microscopy indicated that PVN02 belongs to the family Myoviridae. The genome of PVN02 is a double-stranded linear DNA with a length in 51,668 bp and a content of 52% GC. Among the 64 genes, 16 were predicted to encode proteins with predicted functions. No virulence or antibiotic resistance genes were found in the genome, suggesting it would be a useful biocontrol agent. Classification of the phage based on sequence comparisons, phylogenetic analysis, and gene-sharing networks was carried out, and it was found to be the first representative of a new species within a previously undefined genus in the family Myoviridae. This study confirmed that PVN02 is a novel lytic phage that could potentially be used as an agent to control Aeromonas hydrophila in striped catfish in the Mekong Delta, Vietnam.



中文翻译:

新型溶菌噬菌体感染嗜水气单胞菌(一种条纹cat鱼(Pangasianodon hypophthalmus)的传染因子)的完整基因组序列。

感染气单胞菌的噬菌体vB_AhM_PVN02(PVN02)是从越南芹T市的一条条纹cat鱼池塘水样本中分离出来的。该噬菌体具有高的裂解活性,潜伏期和破裂大小分别约为每个细胞20分钟和105个噬菌斑形成单位。通过透射电子显微镜观察噬菌体表明PVN02属于肌病毒。PVN02的基因组是双链线性DNA,长度为51,668 bp,GC含量为52%。在这64个基因中,有16个被预测为编码具有预测功能的蛋白质。在基因组中未发现任何毒性或抗生素抗性基因,表明它将是有用的生物防治剂。根据序列比较,系统发育分析和基因共享网络对噬菌体进行了分类,发现它是肌病毒科以前未定义属中新物种的第一个代表。这项研究证实,PVN02是一种新型的裂解噬菌体,可以潜在地用作控制湄公河三角洲条纹striped鱼中嗜水气单胞菌的药剂。

更新日期:2020-09-05
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