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Thermococcus indicus sp. nov., a Fe(III)-reducing hyperthermophilic archaeon isolated from the Onnuri Vent Field of the Central Indian Ocean ridge.
Journal of Microbiology ( IF 3.3 ) Pub Date : 2020-04-01 , DOI: 10.1007/s12275-020-9424-9
Jae Kyu Lim 1, 2 , Yun Jae Kim 1, 2 , Jhung-Ahn Yang 1 , Teddy Namirimu 1 , Sung-Hyun Yang 1 , Mi-Jeong Park 1, 2 , Yong Min Kwon 3 , Hyun Sook Lee 1, 2 , Sung Gyun Kang 1, 2 , Jung-Hyun Lee 1, 2 , Kae Kyoung Kwon 1, 2
Affiliation  

A strictly anaerobic, dissimilatory Fe(III)-reducing hyperthermophilic archaeon, designated as strain IOH1T, was isolated from a new deep-sea hydrothermal vent (Onnuri Vent Field) area in the Central Indian Ocean ridge. Strain IOH1T showed > 99% 16S rRNA gene sequence similarity with Thermococcus celericrescens TS2T (99.4%) and T. siculi DSM 12349T (99.2%). Additional three species T. barossii SHCK-94T (99.0%), T. celer Vu13T (98.8%), and T. piezophilus (98.6%) showed > 98.6% of 16S rRNA gene sequence similarity, however, the maximum OrthoANI value is 89.8% for the genome of T. celericrescens TS2T. Strain IOH1T cells are coccoid, 1.2–1.8 μm in diameter, and motile by flagella. Growth was at 70–82°C (optimum 80°C), pH 5.4–8.0 (optimum pH 6.0) with 2–4% (optimum 3%) NaCl. Growth of strain IOH1T was enhanced by starch, pyruvate, D(+)-maltose and maltodextrin as a carbon sources, and elemental sulfur as an electron acceptor; clearly different from those of related species T. celecrescens DSM 17994T and T. siculi DSM 12349T. Strain IOH1T, T. celercrescence DSM 17994T, and T. siculi DSM 12349T reduced soluble Fe(III)-citrate present in the medium, whereas the amount of total cellular proteins increased with the concomitant accumulation of Fe(II). We determined a circular chromosome of 2,234 kb with an extra-chromosomal archaeal plasmid, pTI1, of 7.7 kb and predicted 2,425 genes. The DNA G + C content was 54.9 mol%. Based on physiological properties, phylogenetic, and genome analysis, we proposed that strain IOH1T (= KCTC 15844T = JCM 39077T) is assigned to a new species in the genus Thermococcus and named Thermococcus indicus sp. nov.

中文翻译:

印度热球菌 nov。,一种从中印度洋洋脊的Onnuri通风孔田野中分离出的还原Fe(III)的超高温古细菌。

一个严格厌氧,异化Fe(III)还原热古细菌,命名为菌株IOH1牛逼,从一个新的深海热液喷口(Onnuri喷口区),面积在印度洋脊隔离。菌株IOH1 T显示与芹菜热球菌TS2 T(99.4%)和细圆线虫DSM 12349 T(99.2%)的> 99%的16S rRNA基因序列相似性。另外三个物种T. barossii SHCK-94 Ť(99.0%),T. CELER Vu13 Ť(98.8%),和T. piezophilus(98.6%)表现出> 98.6%的16S rRNA基因序列相似性,但是,芹菜丁香TS2 T基因组的最大OrthoANI值为89.8%。菌株IOH1 T细胞呈球状,直径1.2–1.8μm ,能被鞭毛游动。生长在70–82°C(最佳80°C),pH 5.4–8.0(最佳pH 6.0)和2-4%(最佳3%)NaCl的条件下。淀粉,丙酮酸,D(+)-麦芽糖和麦芽糊精为碳源,元素硫为电子受体,促进了菌株IOH1T的生长。从这些相关物种的明显不同T. celecrescens DSM 17994 ŤT. siculi DSM 12349 Ť。菌株IOH1 TT.DSM 17994 TT. siculi DSM 12349 T还原了培养基中存在的可溶性柠檬酸Fe(III),而总细胞蛋白的量随Fe(II)的积累而增加。我们确定了一个2234 kb的圆染色体,带有7.7 kb的染色体外古细菌质粒pTI1,并预测了2425个基因。DNA G + C含量为54.9mol%。基于生理特性,系统发育和基因组分析,我们提出将菌株IOH1 T(= KCTC 15844 T = JCM 39077 T)分配给Thermococcus属中的一个新物种,并将其命名为Thermococcus indicus sp。十一月
更新日期:2020-04-01
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