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Effect of the his residue on the cyclization of b ions
Journal of the American Society for Mass Spectrometry ( IF 3.2 ) Pub Date : 2010 Aug , DOI: 10.1016/j.jasms.2010.05.006
Benjamin J Bythell 1 , Michaela Knapp-Mohammady , Béla Paizs , Alex G Harrison
Affiliation  

The MSn spectra of the [M + H]+ and b 5 peaks derived from the peptides HAAAAA, AHAAAA, AAHAAA, AAAHAA, and AAAAHA have been measured, as have the spectra of the b 4 ions derived from the first four peptides. The MS2 spectra of the [M + H]+ ions show a substantial series of bn ions with enhanced cleavage at the amide bond C-terminal to His and substantial cleavage at the amide bond N-terminal to His (when there are at least two residues N-terminal to the His residue). There is compelling experimental and theoretical evidence for formation of nondirect sequence ions via cyclization/reopening chemistry in the CID spectra of the b tons when the His residue is near the C-terminus. The experimental evidence is less clear for ions when the His residue is near the N-terminus, although this may be due to the use of multiple alanine residues in the peptide making identifying scrambled peaks more difficult. The product ion mass spectra of the b 4 and b 5 ions from these isomeric peptides with cyclically permuted amino acid sequences are similar, but also show clear differences. This indicates less active cyclization/reopening followed by fragmentation of common structures for b n ions containing His than for sequences of solely aliphatic residues. Despite more energetically favorable cyclization barriers for the b 5 structures, the b 4 ions experimental data show more clear evidence of cyclization and sequence scrambling before fragmentation. For both b 4 and b 5 the energetically most favored structure is a macrocyclic isomer protonated at the His side chain.



中文翻译:

His残基对b离子环化的影响

已经测量了源自肽 HAAAAA、AHAAAA、AAHAAA、AAAHAA 和 AAAAHA的 [M + H] +b 5峰的 MS n光谱,以及源自前四种肽的b 4离子的光谱。[M + H] +离子的 MS 2光谱显示了大量 b n离子,在 His 的酰胺键 C-末端处的裂解增强,在 His 的酰胺键 N-末端处出现大量裂解(当存在于His 残基 N 端至少有两个残基)。有令人信服的实验和理论证据表明,在 CID 光谱中通过环化/重新打开化学形成非直接序列离子。 当 His 残基靠近 C 端时b吨。当 His 残基靠近 N 端时,离子的实验证据不太清楚,尽管这可能是由于在肽中使用了多个丙氨酸残基,使得识别杂乱的峰变得更加困难。这些具有循环置换氨基酸序列的异构肽的b 4b 5离子的产物离子质谱相似,但也显示出明显的差异。这表明,与仅脂肪族残基的序列相比,含有 His 的b n离子的环化/重新打开活性较低,随后常见结构的断裂。尽管b 5在能量上更有利于环化障碍 结构方面,b 4离子实验数据显示了更清晰的环化和碎裂前序列扰乱的证据。对于b 4b 5 而言,能量上最有利的结构是在His侧链质子化的大环异构体。

更新日期:2020-03-01
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