A pan-African pathogen genomics data sharing platform to support disease outbreaks,Nature Medicine

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A pan-African pathogen genomics data sharing platform to support disease outbreaks
Nature Medicine ( IF 82.9 ) Pub Date : 2023-05-09 , DOI: 10.1038/s41591-023-02266-y
Alan Christoffels _{1,

2} , Gerald Mboowa ₁ , Peter van Heusden ₂ , Sello Makhubela ₃ , George Githinji ₄ , Sarah Mwangi ₁ , Harris Onywera ₁ , Ndodo Nnaemeka ₅ , Daniel Gyamfi Amoako _{6,

7} , Idowu Olawoye ₈ , Amadou Diallo ₉ , Placide Mbala-Kingebeni ₁₀ , Samuel O Oyola ₁₁ , Bright Adu ₁₂ , Christopher Mvelase ₁₃ , Pascale Ondoa ₁₄ , Fred Athanasius Dratibi ₁₅ , Abdourahmane Sow ₁₆ , Nicksy Gumede ₁₃ , Sofonias K Tessema ₁ , Ahmed Ogwell Ouma ₁ , Yenew Kebede Tebeje ₁

Affiliation

Africa Centres for Disease Control and Prevention (Africa CDC), African Union Commission, Addis Ababa, Ethiopia.
South African National Bioinformatics Institute, SAMRC Bioinformatics Unit, University of the Western Cape, Cape Town, South Africa.
Nomazangwa Consulting, Haartbeesport, South Africa.
KEMRI-Wellcome Trust Research Programme/KEMRI-CGMR-C, Kilifi, Kenya.
Nigeria Centre for Disease Control, Abuja, Nigeria.
National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa.
College of Health Sciences, University of KwaZulu Natal, Durban, South Africa.
African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.
Institut Pasteur of Dakar, Dakar, Senegal.
Institut National de Recherche Biomédicale, Université de Kinshasa, Kinshasa, Democratic Republic of the Congo.
International Livestock Research Institute (ILRI), Nairobi, Kenya.
Noguchi Memorial Institute for Medical Research, College of Health Sciences, University of Ghana, Accra, Ghana.
WHO Regional Office for Africa, Brazzaville, Republic of Congo.
African Society for Laboratory Medicine (ASLM), Addis Ababa, Ethiopia.
Regional Emergency Hub, WHO Regional Office for Africa, Nairobi, Kenya.
West African Health Organization, Bobo-Dioulasso, Burkina Faso.

High-income countries have a wealth of genomics expertise that can be rapidly activated to deal with disease threats. African countries should invest in a federated data-management system for genomics epidemiology to deal with such threats better.

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