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Selection and truncation of aptamers as fluorescence sensing platforms for selective and sensitive detection of nitrofurazone
Analytica Chimica Acta ( IF 5.7 ) Pub Date : 2023-03-08 , DOI: 10.1016/j.aca.2023.341044
Xu Wen 1 , Xueling Yan 1 , Xiaoling Zheng 1 , Qiming Kou 1 , Lulan Yang 1 , Jiaming Tang 1 , Xingyue Chen 1 , Yong Xie 2 , Tao Le 1
Affiliation  

Nitrofurazone (NFZ) is an antibiotic banned in many countries, as its residue seriously harms the human body. Herein, anti-NFZ aptamers were selected and identified based on the magnetic bead SELEX technique using a ssDNA library with a full length of 90 nucleotides (nt). Five full sequence candidate aptamers (NFZ8, NFZ24, NFZ28, NFZ34, and NFZ70) were obtained by secondary structure analysis. We optimized the entire sequence to obtain a truncated aptamer, a 16 nt sequence (NFZ8-1:5′-GTTCTATTGAAAAAAC-3′) that showed the highest affinity for NFZ (Kd = 76.11 nM). The binding site of NFZ and aptamer NFZ8-1 was found to be "GAA" by molecular docking. In addition, utilizing the most special truncated aptamer NFZ8-1 as the identification probe, a graphene oxide fluorescent aptasensor is an innovative for the detection of NFZ residue that showed a wide linear reach from 1.25 to 160 ng/mL and a low limit of detection of 1.13 ng/mL. In the actual water environment sample detection, the recovery rate ranged from 95.21 to 113.66%, and the coefficient of variation ranged from 3.53 to 11.24%. These results demonstrate that the NFZ-truncated aptamer applied to the aptasensor provides a novel methodology for recognizing NFZ residues.



中文翻译:

选择和截短作为荧光传感平台的适体用于选择性和灵敏地检测呋喃西林

呋喃西林(NFZ)是一种被许多国家禁用的抗生素,因为它的残留物对人体有严重的危害。在此,使用全长 90 个核苷酸 (nt) 的 ssDNA 文库,基于磁珠 SELEX 技术选择和鉴定抗 NFZ 适体。通过二级结构分析获得了五个全序列候选适体(NFZ8、NFZ24、NFZ28、NFZ34 和 NFZ70)。我们优化了整个序列以获得截短的适配体,这是一个 16 nt 序列 (NFZ8-1:5'-GTTCTATTGAAAAAAC-3'),它显示出对 NFZ (K d)的最高亲和力 = 76.11 纳米)。通过分子对接发现NFZ与适体NFZ8-1的结合位点为“GAA”。此外,利用最特殊的截短适配体NFZ8-1作为识别探针,氧化石墨烯荧光适体传感器是检测NFZ残留物的创新,具有1.25至160 ng / mL的宽线性范围和低检测限1.13 纳克/毫升。在实际水环境样品检测中,回收率为95.21~113.66%,变异系数为3.53~11.24%。这些结果表明,应用于适体传感器的 NFZ 截短适体提供了一种识别 NFZ 残基的新方法。

更新日期:2023-03-13
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