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The Lobed-Leaf Phenotype in Brassica juncea Is Associated with the BjLMI1 Locus as Evidenced Using GradedPool-Seq
Agronomy ( IF 3.3 ) Pub Date : 2022-10-30 , DOI: 10.3390/agronomy12112696
Wen-Yuan Fu , Jiu-Cui Teng , Bing Tang , Qing-Qing Wang , Wei Yang , Lian Tao , Zheng-Jie Wan , Kang-Yun Wu , Guo-Fei Tan , Ying Deng

The shape of the leaf is the primary phenotype which determines the commercial value of leaf mustard (Brassica juncea). However, there arefew reports on the lobed-leaf gene of B. juncea, and the molecular regulatory mechanisms underlying leaf margin formation are unknown. In this study, an F2 population derived from ‘MN001’ and ‘MU056’ was constructed. Genetic analysis revealed that the lobed-leaf trait is controlled by a major gene, and lobed leavesare dominant compared to round leaves. The GradedPool-Seq analysis combined with the re-sequencing results of parents identified a major interval on chromosome 10 of B. juncea’s genome A. The BjLMI1 gene (BjuA040054) was confirmed to be a candidate gene by gene ontology (GO) analysis, and it is homologous with LMI1 and encodes HD-Zip protein ATHB-51. A base substitution was observed in the conserved domain, and a 63 bp fragment deletion was found in the exon region between the two parents in the CDs region. The expression of BjLMI1 was significantly higher in the lobed-leaf parent than in the round-leaf parent. These findings provide insights into the molecular mechanism underlying leaf margin formation and will be valuable in the development of an ideal leaf shape in B. juncea.

中文翻译:

芥菜叶表型与 BjLMI1 基因座相关,使用 GradedPool-Seq 证明

叶子的形状是决定芥菜(芥菜)商业价值的主要表型。然而,关于芥菜分叶基因的报道较少,叶缘形成的分子调控机制尚不清楚。在这项研究中,构建了来自“MN001”和“MU056”的 F 2种群。遗传分析表明,裂叶性状由一个主要基因控制,与圆叶相比,裂叶占优势。GradedPool-Seq 分析结合父母的重测序结果确定了芥菜基因组 A. BjLMI1基因 ( BjuA040054 ) 的 10 号染色体上的一个主要区间)经基因本体(GO)分析证实为候选基因,与LMI1同源,编码HD-Zip蛋白ATHB-51。在保守结构域中观察到碱基替换,并且在 CDs 区域中两个亲本之间的外显子区域发现了一个 63 bp 的片段缺失。BjLMI1在裂叶亲本中的表达显着高于圆叶亲本。这些发现提供了对叶缘形成的分子机制的深入了解,并且对于在芥菜中开发理想的叶形具有重要价值。
更新日期:2022-10-30
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