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Identification of pyroptosis-related lncRNA signature and AC005253.1 as a pyroptosis-related oncogene in prostate cancer
Frontiers in Oncology ( IF 3.5 ) Pub Date : 2022-09-29 , DOI: 10.3389/fonc.2022.991165
JiangFan Yu 1 , Rui Tang 2 , JinYu Li 3
Affiliation  

Background

Pyroptosis and prostate cancer (PCa) are closely related. The role of pyroptosis-related long non-coding RNAs (lncRNAs) (PRLs) in PCa remains elusive. This study aimed to explore the relationship between PRL and PCa prognosis.

Methods

Gene expression and clinical signatures were obtained from The Cancer Genome Atlas and Gene Expression Omnibus databases. A PRL risk prediction model was established by survival random forest analysis and least absolute shrinkage and selection operator regression. Functional enrichment, immune status, immune checkpoints, genetic mutations, and drug susceptibility analyses related to risk scores were performed by the single-sample gene set enrichment analysis, gene set variation analysis, and copy number variation analysis. PRL expression was verified in PCa cells. Cell Counting Kit-8, 5-ethynyl-2′-deoxyuridine, wound healing, transwell, and Western blotting assay were used to detect the proliferation, migration, invasion, and pyroptosis of PCa cells, respectively.

Results

Prognostic features based on six PRL (AC129507.1, AC005253.1, AC127502.2, AC068580.3, LIMD1-AS1, and LINC01852) were constructed, and patients in the high-score group had a worse prognosis than those in the low-score group. This feature was determined to be independent by Cox regression analysis, and the area under the curve of the 1-, 3-, and 5-year receiver operating characteristic curves in the testing cohort was 1, 0.93, and 0.92, respectively. Moreover, the external cohort validation confirmed the robustness of the PRL risk prediction model. There was a clear distinction between the immune status of the two groups. The expression of multiple immune checkpoints was also reduced in the high-score group. Gene mutation proportion in the high-score group increased, and the sensitivity to drugs increased significantly. Six PRLs were upregulated in PCa cells. Silencing of AC005253.1 inhibited cell proliferation, migration, and invasion in DU145 and PC-3 cells. Moreover, silencing of AC005253.1 promoted pyroptosis and inflammasome AIM2 expression.

Conclusions

Overall, we constructed a prognostic model of PCa with six PRLs and identified their expression in PCa cells. The experimental verification showed that AC005253.1 could affect the proliferation, migration, and invasion abilities of PCa cells. Meanwhile, AC005253.1 may play an important role in PCa by affecting pyroptosis through the AIM2 inflammasome. This result requires further research for verification.



中文翻译:

焦亡相关 lncRNA 特征和 AC005253.1 作为前列腺癌焦亡相关癌基因的鉴定

Background

焦亡与前列腺癌 (PCa) 密切相关。焦亡相关的长链非编码 RNA (lncRNA) (PRL) 在 PCa 中的作用仍然难以捉摸。本研究旨在探讨PRL与PCa预后的关系。

Methods

基因表达和临床特征来自癌症基因组图谱和基因表达综合数据库。通过生存随机森林分析和最小绝对收缩和选择算子回归建立PRL风险预测模型。通过单样本基因集富集分析、基因集变异分析、拷贝数变异分析,进行了与风险评分相关的功能富集、免疫状态、免疫检查点、基因突变和药物敏感性分析。PRL 表达在 PCa 细胞中得到验证。Cell Counting Kit-8、5-ethynyl-2'-deoxyuridine、创面愈合、transwell和Western blotting分别检测PCa细胞的增殖、迁移、侵袭和细胞焦亡。

Results

构建了基于 6 个 PRL(AC129507.1、AC005253.1、AC127502.2、AC068580.3、LIMD1-AS1 和 LINC01852)的预后特征,高分组患者的预后比低分组患者差-分数组。通过 Cox 回归分析确定该特征是独立的,测试队列中 1 年、3 年和 5 年接受者操作特征曲线的曲线下面积分别为 1、0.93 和 0.92。此外,外部队列验证证实了 PRL 风险预测模型的稳健性。两组的免疫状态有明显区别。高分组中多个免疫检查点的表达也降低。高分组基因突变比例增加,对药物的敏感性明显增加。六个 PRL 在 PCa 细胞中上调。AC005253.1 的沉默抑制了 DU145 和 PC-3 细胞中的细胞增殖、迁移和侵袭。此外,AC005253.1 的沉默促进了细胞焦亡和炎症小体 AIM2 的表达。

Conclusions

总体而言,我们构建了一个具有六个 PRL 的 PCa 预后模型,并确定了它们在 PCa 细胞中的表达。实验验证表明,AC005253.1可以影响PCa细胞的增殖、迁移和侵袭能力。同时,AC005253.1 可能通过 AIM2 炎症小体影响细胞焦亡,在 PCa 中发挥重要作用。这一结果需要进一步研究来验证。

更新日期:2022-09-29
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