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Ordered and deterministic cancer genome evolution after p53 loss
Nature ( IF 64.8 ) Pub Date : 2022-08-17 , DOI: 10.1038/s41586-022-05082-5
Timour Baslan 1 , John P Morris 1, 2, 3 , Zhen Zhao 1, 4 , Jose Reyes 1, 5, 6 , Yu-Jui Ho 1 , Kaloyan M Tsanov 1 , Jonathan Bermeo 7 , Sha Tian 1 , Sean Zhang 1 , Gokce Askan 7 , Aslihan Yavas 7 , Nicolas Lecomte 7 , Amanda Erakky 7 , Anna M Varghese 7 , Amy Zhang 8 , Jude Kendall 9 , Elena Ghiban 9 , Lubomir Chorbadjiev 10 , Jie Wu 11 , Nevenka Dimitrova 11 , Kalyani Chadalavada 12 , Gouri J Nanjangud 12 , Chaitanya Bandlamudi 13 , Yixiao Gong 13 , Mark T A Donoghue 13 , Nicholas D Socci 13 , Alex Krasnitz 9 , Faiyaz Notta 8 , Steve D Leach 7, 14 , Christine A Iacobuzio-Donahue 7 , Scott W Lowe 1, 6
Affiliation  

Although p53 inactivation promotes genomic instability1 and presents a route to malignancy for more than half of all human cancers2,3, the patterns through which heterogenous TP53 (encoding human p53) mutant genomes emerge and influence tumorigenesis remain poorly understood. Here, in a mouse model of pancreatic ductal adenocarcinoma that reports sporadic p53 loss of heterozygosity before cancer onset, we find that malignant properties enabled by p53 inactivation are acquired through a predictable pattern of genome evolution. Single-cell sequencing and in situ genotyping of cells from the point of p53 inactivation through progression to frank cancer reveal that this deterministic behaviour involves four sequential phases—Trp53 (encoding mouse p53) loss of heterozygosity, accumulation of deletions, genome doubling, and the emergence of gains and amplifications—each associated with specific histological stages across the premalignant and malignant spectrum. Despite rampant heterogeneity, the deletion events that follow p53 inactivation target functionally relevant pathways that can shape genomic evolution and remain fixed as homogenous events in diverse malignant populations. Thus, loss of p53—the ‘guardian of the genome’—is not merely a gateway to genetic chaos but, rather, can enable deterministic patterns of genome evolution that may point to new strategies for the treatment of TP53-mutant tumours.



中文翻译:

p53 丢失后有序且确定的癌症基因组进化

尽管 p53 失活会促进基因组不稳定性1并为超过一半的人类癌症提供恶性肿瘤2,3,但异源TP53(编码人类 p53)突变基因组出现并影响肿瘤发生的模式仍然知之甚少。在这里,在一个胰腺导管腺癌小鼠模型中,该模型报告癌症发生前偶发性 p53 杂合性缺失,我们发现 p53 失活导致的恶性特性是通过可预测的基因组进化模式获得的。从 p53 失活到进展到明显癌症的细胞单细胞测序和原位基因分型表明,这种确定性行为涉及四个连续阶段——Trp53(编码小鼠 p53)杂合性丢失、缺失积累、基因组加倍以及增益和扩增的出现——每一个都与癌前和恶性范围内的特定组织学阶段相关。尽管存在猖獗的异质性,但 p53 失活后的缺失事件靶向功能相关的途径,这些途径可以影响基因组进化并在不同的恶性群体中保持固定为同质事件。因此,p53——“基因组的守护者”——的丢失不仅是通向遗传混乱的途径,而且可以使基因组进化的确定性模式成为可能,这可能指向治疗TP53突变肿瘤的新策略。

更新日期:2022-08-18
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