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Screening of Protein–Ligand Binding Using a SABRE Hyperpolarized Reporter
Analytical Chemistry ( IF 7.4 ) Pub Date : 2022-08-03 , DOI: 10.1021/acs.analchem.2c02250
Ratnamala Mandal 1 , Pierce Pham 1 , Christian Hilty 1
Affiliation  

Hyperpolarization through signal amplification by reversible exchange (SABRE) provides a facile means to enhance nuclear magnetic resonance (NMR) signals of small molecules containing an N-heterocycle or other binding site for a polarization transfer catalyst. A purpose-designed reporter ligand, which is capable of binding both to a target protein and to the catalyst, makes the sensitivity enhancement by this technique compatible with the measurement of a range of biomolecular interactions. The 1H polarization of the reporter ligand 4-amidinopyridine, which is targeting trypsin, is used to screen ligands that are not themselves hyperpolarizable by SABRE. The respective protein–ligand dissociation constants (KD) are determined by an observed change in the R2 relaxation rate of the reporter. A calculation of expected signal changes indicates that the accessible ligand KD values extend over several orders of magnitude, while the concentrations of target proteins and ligands can be reduced considering the sensitivity gains from hyperpolarization. In general, the design of a single, weakly binding ligand for a target protein enables the use of SABRE hyperpolarization for ligand screening or other biophysical studies involving macromolecular interactions.

中文翻译:

使用 SABRE 超极化报告基因筛选蛋白质-配体结合

通过可逆交换信号放大实现超极化 (SABRE) 提供了一种简便的方法来增强包含 N-杂环或其他极化转移催化剂结合位点的小分子的核磁共振 (NMR) 信号。一种专门设计的报告配体,能够与靶蛋白和催化剂结合,通过这种技术提高灵敏度,与测量一系列生物分子相互作用相兼容。靶向胰蛋白酶的报告配体 4-脒基吡啶的1 H 极化用于筛选本身不能被 SABRE 超极化的配体。各自的蛋白质-配体解离常数 ( K D ) 由观察到的R变化决定2记者的放松率。对预期信号变化的计算表明,可接近的配体K D值扩展了几个数量级,而考虑到超极化的灵敏度增益,可以降低靶蛋白和配体的浓度。一般来说,针对靶蛋白设计单一的弱结合配体,可以使用 SABRE 超极化进行配体筛选或其他涉及大分子相互作用的生物物理研究。
更新日期:2022-08-03
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