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Genome-wide association study in individuals of European and African ancestry and multi-trait analysis of opioid use disorder identifies 19 independent genome-wide significant risk loci
Molecular Psychiatry ( IF 9.6 ) Pub Date : 2022-07-25 , DOI: 10.1038/s41380-022-01709-1
Joseph D Deak 1, 2 , Hang Zhou 1, 2 , Marco Galimberti 1, 2 , Daniel F Levey 1, 2 , Frank R Wendt 1, 2 , Sandra Sanchez-Roige 3, 4 , Alexander S Hatoum 5 , Emma C Johnson 5 , Yaira Z Nunez 1, 2 , Ditte Demontis 6, 7, 8 , Anders D Børglum 6, 7, 8 , Veera M Rajagopal 6, 7, 8 , Mariela V Jennings 3 , Rachel L Kember 9, 10 , Amy C Justice 1, 2 , Howard J Edenberg 11 , Arpana Agrawal 5 , Renato Polimanti 1, 2 , Henry R Kranzler 9, 10 , Joel Gelernter 1, 2
Affiliation  

Despite the large toll of opioid use disorder (OUD), genome-wide association studies (GWAS) of OUD to date have yielded few susceptibility loci. We performed a large-scale GWAS of OUD in individuals of European (EUR) and African (AFR) ancestry, optimizing genetic informativeness by performing MTAG (Multi-trait analysis of GWAS) with genetically correlated substance use disorders (SUDs). Meta-analysis included seven cohorts: the Million Veteran Program, Psychiatric Genomics Consortium, iPSYCH, FinnGen, Partners Biobank, BioVU, and Yale-Penn 3, resulting in a total N = 639,063 (Ncases = 20,686;Neffective = 77,026) across ancestries. OUD cases were defined as having a lifetime OUD diagnosis, and controls as anyone not known to meet OUD criteria. We estimated SNP-heritability (h2SNP) and genetic correlations (rg). Based on genetic correlation, we performed MTAG on OUD, alcohol use disorder (AUD), and cannabis use disorder (CanUD). A leave-one-out polygenic risk score (PRS) analysis was performed to compare OUD and OUD-MTAG PRS as predictors of OUD case status in Yale-Penn 3. The EUR meta-analysis identified three genome-wide significant (GWS; p ≤ 5 × 108) lead SNPs—one at FURIN (rs11372849; p = 9.54 × 1010) and two OPRM1 variants (rs1799971, p = 4.92 × 1009; rs79704991, p = 1.11 × 1008; r2 = 0.02). Rs1799971 (p = 4.91 × 1008) and another OPRM1 variant (rs9478500; p = 1.95 × 1008; r2 = 0.03) were identified in the cross-ancestry meta-analysis. Estimated h2SNP was 12.75%, with strong rg with CanUD (rg = 0.82; p = 1.14 × 1047) and AUD (rg = 0.77; p = 6.36 × 1078). The OUD-MTAG resulted in a GWAS Nequivalent = 128,748 and 18 independent GWS loci, some mapping to genes or gene regions that have previously been associated with psychiatric or addiction phenotypes. The OUD-MTAG PRS accounted for 3.81% of OUD variance (beta = 0.61;s.e. = 0.066; p = 2.00 × 1016) compared to 2.41% (beta = 0.45; s.e. = 0.058; p = 2.90 × 1013) explained by the OUD PRS. The current study identified OUD variant associations at OPRM1, single variant associations with FURIN, and 18 GWS associations in the OUD-MTAG. The genetic architecture of OUD is likely influenced by both OUD-specific loci and loci shared across SUDs.



中文翻译:


对欧洲和非洲血统个体的全基因组关联研究以及阿片​​类药物使用障碍的多特征分析确定了 19 个独立的全基因组显着风险位点



尽管阿片类药物使用障碍 (OUD) 造成了巨大损失,但迄今为止 OUD 的全基因组关联研究 (GWAS) 几乎没有发现易感位点。我们对欧洲 (EUR) 和非洲 (AFR) 血统的个体进行了大规模的 OUD GWAS,通过对遗传相关物质使用障碍 (SUD) 进行 MTAG(GWAS 多特征分析)来优化遗传信息。荟萃分析包括七个队列:百万退伍军人计划、精神病学基因组学联盟、iPSYCH、FinnGen、Partners Biobank、BioVU 和耶鲁-宾夕法尼亚大学 3,结果总计N = 639,063( N= 20,686;N有效= 77,026)祖先。 OUD 病例被定义为终生 OUD 诊断,对照组为未知符合 OUD 标准的任何人。我们估计了 SNP 遗传力 (h 2 SNP ) 和遗传相关性 (r g )。基于遗传相关性,我们对 OUD、酒精使用障碍 (AUD) 和大麻使用障碍 (CanUD) 进行了 MTAG。进行了留一法多基因风险评分 (PRS) 分析,以比较 OUD 和 OUD-MTAG PRS 作为耶鲁-宾夕法尼亚大学 OUD 病例状态的预测因子 3。EUR 荟萃分析确定了三个全基因组显着性 (GWS; p ≤ 5 × 10 8 ) 先导 SNP — 一个位于FURIN (rs11372849; p = 9.54 × 10 10 ) 和两个OPRM1变体 (rs1799971, p = 4.92 × 10 09 ;rs79704991, p = 1.11 × 10 08 ;r 2 = 0.02)。 Rs1799971 (p = 4.91 × 10 08 ) 和另一个OPRM1变体 (rs9478500; p = 1。95× 10-08 r 2 = 0.03)在跨血统荟萃分析中被确定。估计 h 2 SNP为 12.75%,CanUD 具有较强的 r g (r g = 0.82; p = 1.14 × 10 47 ) 和 AUD (r g = 0.77; p = 6.36 × 10 78 )。 OUD-MTAG 产生了 GWAS N等效值= 128,748 和 18 个独立的 GWS 位点,其中一些映射到先前与精神病或成瘾表型相关的基因或基因区域。 OUD-MTAG PRS 占 OUD 方差的 3.81%(beta = 0.61;se = 0.066; p = 2.00 × 10 16 ),而 OUD-MTAG PRS 占 OUD 方差的 2.41%(beta = 0.45;se = 0.058; p = 2.90 × 10 13 )由 OUD PRS 解释。目前的研究确定了OPRM1中的 OUD 变异关联、与FURIN的单一变异关联以及 OUD-MTAG 中的 18 个 GWS 关联。 OUD 的遗传结构可能受到 OUD 特异性基因座和 SUD 共享基因座的影响。

更新日期:2022-07-25
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