当前位置: X-MOL 学术Nature › 论文详情
Our official English website, www.x-mol.net, welcomes your feedback! (Note: you will need to create a separate account there.)
De novo design of discrete, stable 310-helix peptide assemblies
Nature ( IF 50.5 ) Pub Date : 2022-06-22 , DOI: 10.1038/s41586-022-04868-x
Prasun Kumar 1 , Neil G Paterson 2 , Jonathan Clayden 1 , Derek N Woolfson 1, 3, 4
Affiliation  

The α-helix is pre-eminent in structural biology1 and widely exploited in protein folding2, design3 and engineering4. Although other helical peptide conformations do exist near to the α-helical region of conformational space—namely, 310-helices and π-helices5—these occur much less frequently in protein structures. Less favourable internal energies and reduced tendencies to pack into higher-order structures mean that 310-helices rarely exceed six residues in length in natural proteins, and that they tend not to form normal supersecondary, tertiary or quaternary interactions. Here we show that despite their absence in nature, synthetic peptide assemblies can be built from 310-helices. We report the rational design, solution-phase characterization and an X-ray crystal structure for water-soluble bundles of 310-helices with consolidated hydrophobic cores. The design uses six-residue repeats informed by analysing 310-helical conformations in known protein structures, and incorporates α-aminoisobutyric acid residues. Design iterations reveal a tipping point between α-helical and 310-helical folding, and identify features required for stabilizing assemblies of 310-helices. This work provides principles and rules to open opportunities for designing into this hitherto unexplored region of protein-structure space.



中文翻译:

离散、稳定的 310 螺旋肽组件的从头设计

α-螺旋在结构生物学1中表现突出,并在蛋白质折叠2、设计3和工程4中得到广泛利用。尽管其他螺旋肽构象确实存在于构象空间的 α-螺旋区域附近——即 3个 10-螺旋和 π-螺旋5——它们在蛋白质结构中的出现频率要低得多。不太有利的内部能量和减少进入高阶结构的趋势意味着 3 10- 在天然蛋白质中,螺旋的长度很少超过六个残基,并且它们往往不会形成正常的超二级、三级或四级相互作用。在这里,我们表明尽管它们在自然界中不存在,但可以从 3个 10 -螺旋构建合成肽组件。我们报告了具有固结疏水核心的 3个 10-螺旋水溶性束的合理设计、溶液相表征和 X 射线晶体结构。该设计使用通过分析已知蛋白质结构中的 3个 10螺旋构象获得的六残基重复序列,并结合了 α-氨基异丁酸残基。设计迭代揭示了 α 螺旋和 3 10之间的转折点-螺旋折叠,并确定稳定 3个 10 -螺旋组件所需的特征。这项工作提供了原则和规则,为设计这个迄今为止尚未探索的蛋白质结构空间区域提供了机会。

更新日期:2022-06-23
down
wechat
bug