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Structural insights into the function-modulating effects of nanobody binding to the integrin receptor αMβ2
Journal of Biological Chemistry ( IF 4.0 ) Pub Date : 2022-06-20 , DOI: 10.1016/j.jbc.2022.102168
Rasmus K Jensen 1 , Henrik Pedersen 1 , Josefine Lorentzen 1 , Nick Stub Laursen 2 , Thomas Vorup-Jensen 2 , Gregers Rom Andersen 1
Affiliation  

The integrin receptor αMβ2 mediates phagocytosis of complement-opsonized objects, adhesion to the extracellular matrix, and transendothelial migration of leukocytes. However, the mechanistic aspects of αMβ2 signaling upon ligand binding are unclear. Here, we present the first atomic structure of the human αMβ2 headpiece fragment in complex with the nanobody (Nb) hCD11bNb1 at a resolution of 3.2 Å. We show that the receptor headpiece adopts the closed conformation expected to exhibit low ligand affinity. The crystal structure indicates that in the R77H αM variant, associated with systemic lupus erythematosus, the modified allosteric relationship between ligand binding and integrin outside–inside signaling is due to subtle conformational effects transmitted over a distance of 40 Å. Furthermore, we found the Nb binds to the αI domain of the αM subunit in an Mg2+-independent manner with low nanomolar affinity. Biochemical and biophysical experiments with purified proteins demonstrated that the Nb acts as a competitive inhibitor through steric hindrance exerted on the thioester domain of complement component iC3b attempting to bind the αM subunit. Surprisingly, we show that the Nb stimulates the interaction of cell-bound αMβ2 with iC3b, suggesting that it may represent a novel high-affinity proteinaceous αMβ2-specific agonist. Taken together, our data suggest that the iC3b–αMβ2 complex may be more dynamic than predicted from the crystal structure of the core complex. We propose a model based on the conformational spectrum of the receptor to reconcile these observations regarding the functional consequences of hCD11bNb1 binding to αMβ2.



中文翻译:

纳米抗体与整合素受体αMβ2结合的功能调节作用的结构洞察

整合素受体 α M β 2介导补体调理物的吞噬作用、与细胞外基质的粘附以及白细胞的跨内皮迁移。然而,配体结合后 α M β 2信号传导的机制方面尚不清楚。在这里,我们展示了与纳米体 (Nb) hCD11bNb1 复合的人类 α M β 2头饰片段的第一个原子结构,分辨率为 3.2 Å。我们表明受体头件采用预期表现出低配体亲和力的封闭构象。晶体结构表明,在 R77H α M变体,与系统性红斑狼疮相关,配体结合和整合素内外信号之间的修饰变构关系是由于在 40 Å 距离上传输的微妙构象效应。此外,我们发现Nb以不依赖Mg 2+的方式与αM亚基的αI结构域结合,具有低纳摩尔亲和力。纯化蛋白质的生化和生物物理实验表明,Nb 通过施加在补体成分 iC3b 的硫酯结构域上的空间位阻作为竞争性抑制剂,试图结合 α M亚基。令人惊讶的是,我们表明 Nb 刺激细胞结合的 α M β 2的相互作用与 iC3b 结合,表明它可能代表一种新型的高亲和力蛋白质 α M β 2特异性激动剂。总之,我们的数据表明 iC3b-α M β 2复合物可能比核心复合物的晶体结构所预测的更具动态性。我们提出了一个基于受体构象谱的模型,以协调这些关于 hCD11bNb1 与 α M β 2结合的功能后果的观察结果。

更新日期:2022-06-20
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