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A canopy photosynthesis model based on a highly generalizable artificial neural network incorporated with a mechanistic understanding of single-leaf photosynthesis
Agricultural and Forest Meteorology ( IF 5.6 ) Pub Date : 2022-06-08 , DOI: 10.1016/j.agrformet.2022.109036
Takahiro Kaneko , Koichi Nomura , Daisuke Yasutake , Tadashige Iwao , Takashi Okayasu , Yukio Ozaki , Makito Mori , Tomoyoshi Hirota , Masaharu Kitano

Crop productivity is largely dependent on canopy photosynthesis, which is difficult to measure at farming sites. Therefore, real-time estimation of the canopy photosynthetic rate (Ac) is expected to facilitate effective farm management. For the estimation of Ac, two types of mathematical models (i.e., process-based models and empirical models) have been used, although both types have their own weaknesses. Process-based models inevitably require many model parameters that are difficult to identify, while empirical models, including artificial neural network (ANN) models, have a low predictive ability outside of the range of training datasets. To overcome these weaknesses, we developed a hybrid canopy photosynthesis model that included components of both process-based models and ANN models. In this hybrid model, the single-leaf photosynthetic rate (AL) and leaf area index (LAI) were first estimated from information easily obtainable at farming sites: AL was estimated by the process-based model of AL (i.e., the biochemical photosynthesis model of Farquhar et al. (1980)) from environmental data (photosynthetic photon flux density (PPFD), air temperature (Ta), humidity, and atmospheric CO2 concentration (Ca)), and the LAI was estimated by an analysis of crop canopy imagery. As highly explainable information for Ac, the estimated AL and LAI were input into the ANN model to estimate Ac. As such, the ANN model learned the logical relationships between the inputs (AL and LAI) and the output (Ac). Detailed validation analysis using nine spinach Ac datasets revealed that the hybrid ANN model can estimate Ac accurately throughout the whole growth period, even when training and test datasets were obtained in different seasons under different CO2 concentrations and based on training datasets of only three days. This study highlights the high generalizability of the hybrid ANN model, which is a prerequisite for practical application in environmentally controlled crop production.



中文翻译:

基于高度概括的人工神经网络的冠层光合作用模型,结合对单叶光合作用的机械理解

作物生产力很大程度上取决于冠层光合作用,这在农田很难测量。因此,实时估计冠层光合速率 ( A c ) 有望促进有效的农场管理。对于A c的估计,有两种数学模型(.、基于过程的模型和经验模型)已被使用,尽管这两种类型都有自己的弱点。基于过程的模型不可避免地需要许多难以识别的模型参数,而经验模型,包括人工神经网络 (ANN) 模型,在训练数据集范围之外具有较低的预测能力。为了克服这些弱点,我们开发了一种混合冠层光合作用模型,其中包括基于过程的模型和 ANN 模型的组件。在这个混合模型中,单叶光合速率 ( A L ) 和叶面积指数 (LAI) 首先是根据在农田容易获得的信息估算的:A L是通过基于过程的A L模型估算的(., Farquhar等人的生化光合作用模型。(1980)) 来自环境数据(光合光子通量密度 (PPFD)、气温 ( T a )、湿度和大气 CO 2浓度 (C一个)),并通过分析作物冠层图像来估计 LAI。作为A c的高度可解释信息,估计的 A L和 LAI 被输入到 ANN 模型中以估计A c。因此,ANN 模型学习了输入(A L和 LAI)和输出(A c)之间的逻辑关系。使用九个菠菜A c数据集的详细验证分析表明,混合 ANN 模型可以在整个生长期准确估计A c ,即使在不同季节获得不同 CO 2下的训练和测试数据集也是如此浓度并基于仅三天的训练数据集。本研究强调了混合人工神经网络模型的高度概括性,这是在环境控制作物生产中实际应用的先决条件。

更新日期:2022-06-09
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