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Identification of nosZ-expressing microorganisms consuming trace N2O in microaerobic chemostat consortia dominated by an uncultured Burkholderiales
The ISME Journal ( IF 10.8 ) Pub Date : 2022-06-08 , DOI: 10.1038/s41396-022-01260-5
Daehyun D Kim 1 , Heejoo Han 1 , Taeho Yun 1 , Min Joon Song 1 , Akihiko Terada 2 , Michele Laureni 3, 4 , Sukhwan Yoon 1
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Microorganisms possessing N2O reductases (NosZ) are the only known environmental sink of N2O. While oxygen inhibition of NosZ activity is widely known, environments where N2O reduction occurs are often not devoid of O2. However, little is known regarding N2O reduction in microoxic systems. Here, 1.6-L chemostat cultures inoculated with activated sludge samples were sustained for ca. 100 days with low concentration (<2 ppmv) and feed rate (<1.44 µmoles h−1) of N2O, and the resulting microbial consortia were analyzed via quantitative PCR (qPCR) and metagenomic/metatranscriptomic analyses. Unintended but quantified intrusion of O2 sustained dissolved oxygen concentration above 4 µM; however, complete N2O reduction of influent N2O persisted throughout incubation. Metagenomic investigations indicated that the microbiomes were dominated by an uncultured taxon affiliated to Burkholderiales, and, along with the qPCR results, suggested coexistence of clade I and II N2O reducers. Contrastingly, metatranscriptomic nosZ pools were dominated by the Dechloromonas-like nosZ subclade, suggesting the importance of the microorganisms possessing this nosZ subclade in reduction of trace N2O. Further, co-expression of nosZ and ccoNO/cydAB genes found in the metagenome-assembled genomes representing these putative N2O-reducers implies a survival strategy to maximize utilization of scarcely available electron acceptors in microoxic environmental niches.



中文翻译:

在由未培养的伯克霍尔德氏菌属主导的微需氧恒化器联合体中鉴定消耗微量 N2O 的表达 nosZ 的微生物

拥有 N 2 O 还原酶 (NosZ) 的微生物是唯一已知的 N 2 O 环境汇。虽然氧对 NosZ 活性的抑制是众所周知的,但发生 N 2 O 还原的环境通常并非没有 O 2。然而,关于微氧系统中 N 2 O 的减少知之甚少。在这里,接种活性污泥样品的 1.6 L 恒化器培养物持续了约 10 年。通过定量 PCR (qPCR) 和宏基因组/宏转录组分析对低浓度 (<2 ppmv) 和进料速率 (<1.44 µmoles h -1 ) 的 N 2 O 进行 100 天分析,并分析由此产生的微生物群落。O 2的意外但量化的入侵持续溶解氧浓度高于 4 µM;然而,在整个孵化过程中,流入的 N 2 O完全减少了 N 2 O。宏基因组研究表明,微生物组主要由隶属于伯克霍尔德氏菌目 (Burkholderiales) 的未培养分类群主导,并且与 qPCR 结果一起,表明进化枝 I 和进化枝 II N 2 O 还原剂共存。相比之下,元转录组nosZ池由脱氯单胞菌样nosZ亚枝主导,表明拥有该nosZ亚枝的微生物在减少痕量 N 2 O 方面的重要性。此外,nosZ的共表达在代表这些推定的 N 2 O 还原剂的宏基因组组装基因组中发现的和ccoNO / cydAB基因暗示了一种生存策略,以最大限度地利用微氧环境生态位中稀缺的电子受体。

更新日期:2022-06-08
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