An early warning system for emerging SARS-CoV-2 variants,Nature Medicine

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An early warning system for emerging SARS-CoV-2 variants
Nature Medicine ( IF 82.9 ) Pub Date : 2022-05-30 , DOI: 10.1038/s41591-022-01836-w
Lorenzo Subissi ₁ , Anne von Gottberg _{2,

3} , Lipi Thukral ₄ , Nathalie Worp _{5,

6} , Bas B Oude Munnink _{5,

6} , Surabhi Rathore ₄ , Laith J Abu-Raddad ₇ , Ximena Aguilera ₈ , Erik Alm ₉ , Brett N Archer ₁ , Homa Attar Cohen ₁ , Amal Barakat ₁₀ , Wendy S Barclay ₁₁ , Jinal N Bhiman _{2,

3} , Leon Caly ₁₂ , Meera Chand ₁₃ , Mark Chen ₁₄ , Ann Cullinane ₁₅ , Tulio de Oliveira ₁₆ , Christian Drosten ₁₇ , Julian Druce ₈ , Paul Effler ₁₈ , Ihab El Masry ₁₉ , Adama Faye ₂₀ , Simani Gaseitsiwe _{21,

22} , Elodie Ghedin ₂₃ , Rebecca Grant ₁ , Bart L Haagmans _{5,

6} , Belinda L Herring ₂₄ , Shilpa S Iyer ₂₅ , Zyleen Kassamali ₁ , Manish Kakkar ₂₆ , Rebecca J Kondor ₂₇ , Juliana A Leite ₂₈ , Yee-Sin Leo ₁₄ , Gabriel M Leung ₂₉ , Marco Marklewitz ₃₀ , Sikhulile Moyo _{21,

22} , Jairo Mendez-Rico ₂₈ , Nada M Melhem ₃₁ , Vincent Munster ₃₂ , Karen Nahapetyan ₃₀ , Djin-Ye Oh ₃₃ , Boris I Pavlin ₁ , Thomas P Peacock _{11,

13} , Malik Peiris ₂₉ , Zhibin Peng ₃₄ , Leo L M Poon ₂₉ , Andrew Rambaut ₃₅ , Jilian Sacks ₁ , Yinzhong Shen ₃₆ , Marilda M Siqueira ₃₇ , Sofonias K Tessema ₃₈ , Erik M Volz ₁₁ , Volker Thiel _{39,

40} , Sylvie van der Werf ₄₁ , Sylvie Briand ₁ , Mark D Perkins ₁ , Maria D Van Kerkhove ₁ , Marion P G Koopmans _{5,

6} , Anurag Agrawal ₄₂

Affiliation

World Health Organization, Geneva, Switzerland.
National Institute for Communicable Diseases, Johannesburg, South Africa.
School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
CSIR Institute of Genomics and Integrative Biology, Delhi, India.
Erasmus Medical Centre, Rotterdam, the Netherlands.
Pandemic and Disaster Preparedness Research Centre, Rotterdam/Delft, the Netherlands.
Weill Cornell Medicine - Qatar of Cornell University, Doha, Qatar.
Epidemiology and Health Policy Centre, Universidad del Desarollo, Santiago, Chile.
European Centre for Disease Prevention and Control, Stockholm, Sweden.
World Health Organization Regional Office for the Eastern Mediterranean, Cairo, Egypt.
Imperial College London, London, UK.
Victorian Infectious Diseases Reference Laboratory, Melbourne, Victoria, Australia.
UK Health Security Agency, London, UK.
National Centre for Infectious Diseases, Singapore, Singapore.
World Organisation for Animal Health, Paris, France.
Centre for Epidemic Response and Innovation, Stellenbosch University, Stellenbosch, South Africa.
Charité Medical Center, Berlin, Germany.
University of Western Australia, Perth, Western Australia, Australia.
Food and Agriculture Organization, Rome, Italy.
Institut de Santé et Développement, Université Cheikh Anta Diop, Dakar, Senegal.
Botswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Harvard T.H Chan School of Public Health, Department of Immunology & Infectious Diseases, Boston, MA, USA.
National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
World Health Organization Regional Office for Africa, Brazzaville, Republic of Congo.
World Health Organization Regional Office for Western Pacific, Manila, The Philippines.
World Health Organization Regional Office for South-East Asia, New Delhi, India.
United States Centers for Disease Control and Prevention, Atlanta, GA, USA.
World Health Organization Regional Office for the Americas, Washington, DC, USA.
School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, The People's Republic of China.
World Health Organization Regional Office for Europe, Copenhagen, Denmark.
American University of Beirut, Beirut, Lebanon.
National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rocky Mountain Laboratories, Hamilton, MT, USA.
Robert Koch Institute, Berlin, Germany.
Chinese Center for Disease Control and Prevention, Beijing, The People's Republic of China.
University of Edinburgh, Edinburgh, UK.
Shanghai Public Health Clinical Center, Fudan University, Shanghai, The People's Republic of China.
Oswaldo Cruz Institute, Fiocruz, Rio de Janeiro, Brazil.
Africa Centers for Disease Control and Prevention, Addis Ababa, Ethiopia.
Multidisciplinary Center for Infectious Diseases, University of Bern, Bern, Switzerland.
Institute of Virology and Immunology, Mittelhäusern and Bern, Switzerland.
Institut Pasteur, Université Paris Cité, Paris, France.
Trivedi School of Biosciences, Ashoka University, Sonipat, India.

Global sequencing and surveillance capacity for SARS-CoV-2 must be strengthened and combined with multidisciplinary studies of infectivity, virulence and immune escape, in order to track the unpredictable evolution of the ongoing COVID-19 pandemic.

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