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Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement
Nature Biotechnology ( IF 33.1 ) Pub Date : 2021-11-01 , DOI: 10.1038/s41587-021-01058-4
Kumar Gaurav 1 , Sanu Arora 1 , Paula Silva 2, 3 , Javier Sánchez-Martín 4 , Richard Horsnell 5 , Liangliang Gao 2 , Gurcharn S Brar 6, 7 , Victoria Widrig 4 , W John Raupp 2 , Narinder Singh 2, 8 , Shuangye Wu 2 , Sandip M Kale 9 , Catherine Chinoy 1 , Paul Nicholson 1 , Jesús Quiroz-Chávez 1 , James Simmonds 1 , Sadiye Hayta 1 , Mark A Smedley 1 , Wendy Harwood 1 , Suzannah Pearce 1 , David Gilbert 1 , Ngonidzashe Kangara 1 , Catherine Gardener 1 , Macarena Forner-Martínez 1 , Jiaqian Liu 1, 10 , Guotai Yu 1, 11 , Scott A Boden 1, 12 , Attilio Pascucci 1, 13 , Sreya Ghosh 1 , Amber N Hafeez 1 , Tom O'Hara 1 , Joshua Waites 1 , Jitender Cheema 1 , Burkhard Steuernagel 1 , Mehran Patpour 14 , Annemarie Fejer Justesen 14 , Shuyu Liu 15 , Jackie C Rudd 15 , Raz Avni 16 , Amir Sharon 16 , Barbara Steiner 17 , Rizky Pasthika Kirana 17, 18 , Hermann Buerstmayr 17 , Ali A Mehrabi 19 , Firuza Y Nasyrova 20 , Noam Chayut 21 , Oadi Matny 22 , Brian J Steffenson 22 , Nitika Sandhu 23 , Parveen Chhuneja 23 , Evans Lagudah 24 , Ahmed F Elkot 25 , Simon Tyrrell 26 , Xingdong Bian 26 , Robert P Davey 26 , Martin Simonsen 27 , Leif Schauser 27 , Vijay K Tiwari 28 , H Randy Kutcher 6 , Pierre Hucl 6 , Aili Li 29 , Deng-Cai Liu 30 , Long Mao 29 , Steven Xu 31 , Gina Brown-Guedira 32 , Justin Faris 31 , Jan Dvorak 33 , Ming-Cheng Luo 33 , Ksenia Krasileva 34 , Thomas Lux 35 , Susanne Artmeier 35 , Klaus F X Mayer 35, 36 , Cristobal Uauy 1 , Martin Mascher 9, 37 , Alison R Bentley 5, 38 , Beat Keller 4 , Jesse Poland 2, 11 , Brande B H Wulff 1, 11
Affiliation  

Aegilops tauschii, the diploid wild progenitor of the D subgenome of bread wheat, is a reservoir of genetic diversity for improving bread wheat performance and environmental resilience. Here we sequenced 242 Ae. tauschii accessions and compared them to the wheat D subgenome to characterize genomic diversity. We found that a rare lineage of Ae. tauschii geographically restricted to present-day Georgia contributed to the wheat D subgenome in the independent hybridizations that gave rise to modern bread wheat. Through k-mer-based association mapping, we identified discrete genomic regions with candidate genes for disease and pest resistance and demonstrated their functional transfer into wheat by transgenesis and wide crossing, including the generation of a library of hexaploids incorporating diverse Ae. tauschii genomes. Exploiting the genomic diversity of the Ae. tauschii ancestral diploid genome permits rapid trait discovery and functional genetic validation in a hexaploid background amenable to breeding.



中文翻译:

节节麦的种群基因组分析确定了面包小麦改良的目标

节节麦是面包小麦 D 亚基因组的二倍体野生祖细胞,是提高面包小麦性能和环境适应力的遗传多样性库。在这里,我们对 242 Ae 进行了测序。tauschii种质并将它们与小麦 D 亚基因组进行比较以表征基因组多样性。我们发现了一种罕见的Ae 谱系。tauschii在地理上仅限于当今的格鲁吉亚,在产生现代面包小麦的独立杂交中为小麦 D 亚基因组做出了贡献。通过k基于聚体的关联作图,我们确定了具有抗病虫害候选基因的离散基因组区域,并通过转基因和广泛杂交证明了它们在小麦中的功能转移,包括生成包含多种Ae 的六倍体文库。tauschii基因组。利用Ae 的基因组多样性。tauschii祖先二倍体基因组允许在适合育种的六倍体背景中快速发现性状和功能遗传验证。

更新日期:2021-11-01
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