当前位置: X-MOL 学术Virus Genes › 论文详情
Our official English website, www.x-mol.net, welcomes your feedback! (Note: you will need to create a separate account there.)
Genome characterization of fig umbra-like virus
Virus Genes ( IF 1.9 ) Pub Date : 2021-09-15 , DOI: 10.1007/s11262-021-01867-4
Xupeng Wang 1 , Alejandro Olmedo-Velarde 1 , Adriana Larrea-Sarmiento 1 , Anne E Simon 2 , Alexandra Kong 1 , Wayne Borth 1 , Jon Y Suzuki 3 , Marisa M Wall 3 , John Hu 1 , Michael Melzer 1
Affiliation  

The complete genome of a new umbra-like virus from edible fig (Ficus carica) was identified by high-throughput sequencing. Based on its similarity to umbra-like virus genome sequences available in GenBank, the proposed name of this new virus is “fig umbra-like virus” (FULV). The genome of full-length FULV-1 consists of 3049 nucleotides organized into three open reading frames (ORFs). Pairwise comparisons showed that the complete nucleotide sequence of the virus had the highest identity (71.3%) to citrus yellow vein-associated virus (CYVaV). In addition, phylogenetic trees based on whole-genome nucleotide sequences and amino acid sequences of the RNA-dependent RNA polymerase showed that FULV forms a monophyletic lineage with CYVaV and other umbra-like viruses. Based on the demarcation criteria of the genus Umbravirus, and lack of two umbravirus ORFs, we propose that FULV is a putative new member of the umbra-like virus clade within the family Tombusviridae.



中文翻译:

无花果树影病毒的基因组特征

通过高通量测序鉴定了来自食用无花果( Ficus carica )的一种新的本影样病毒的完整基因组。基于其与 GenBank 中可用的类本影病毒基因组序列的相似性,这种新病毒的建议名称为“无花果类本影病毒”(FULV)。全长 FULV-1 的基因组由 3049 个核苷酸组成,这些核苷酸被组织成三个开放阅读框 (ORF)。两两比较表明,该病毒的完整核苷酸序列与柑橘黄脉相关病毒(CYVaV)具有最高的同一性(71.3%)。此外,基于全基因组核苷酸序列和依赖于 RNA 的 RNA 聚合酶的氨基酸序列的系统发育树表明,FULV 与 CYVaV 和其他本影样病毒形成单系谱系。基于属的划分标准由于 Umbravirus和缺乏两个 Umbravirus ORF,我们提出 FULV 是 Tombusviridae 家族中的Umbra样病毒进化枝的推定新成员。

更新日期:2021-09-16
down
wechat
bug