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Using multiband multi-echo imaging to improve the robustness and repeatability of co-activation pattern analysis for dynamic functional connectivity
NeuroImage ( IF 4.7 ) Pub Date : 2021-09-04 , DOI: 10.1016/j.neuroimage.2021.118555
Alexander D Cohen 1 , Catie Chang 2 , Yang Wang 1
Affiliation  

Emerging evidence has shown that functional connectivity is dynamic and changes over the course of a scan. Furthermore, connectivity patterns can arise from short periods of co-activation on the order of seconds. Recently, a dynamic co-activation patterns (CAPs) analysis was introduced to examine the co-activation of voxels resulting from individual timepoints. The goal of this study was to apply CAPs analysis on resting state fMRI data collected using an advanced multiband multi-echo (MBME) sequence, in comparison with a multiband (MB) sequence with a single echo. Data from 28 healthy control subjects were examined. Subjects underwent two resting state scans, one MBME and one MB, and 19 subjects returned within two weeks for a repeat scan session. Data preprocessing included advanced denoising namely multi-echo independent component analysis (ME-ICA) for the MBME data and an ICA-based strategy for Automatic Removal of Motion Artifacts (ICA-AROMA) for the MB data. The CAPs analysis was conducted using the newly published TbCAPs toolbox. CAPs were extracted using both seed-based and seed-free approaches. Timepoints were clustered using k-means clustering. The following metrics were compared between MBME and MB datasets: mean activation in each CAP, the spatial correlation and mean squared error (MSE) between each timepoint and the centroid CAP it was assigned to, within-dataset variance across timepoints assigned to the same CAP, and the between-session spatial correlation of each CAP. Co-activation was heightened for MBME data for the majority of CAPs. Spatial correlation and MSE between each timepoint and its assigned centroid CAP were higher and lower respectively for MBME data. The within-dataset variance was also lower for MBME data. Finally, the between-session spatial correlation was higher for MBME data. Overall, our findings suggest that the advanced MBME sequence is a promising avenue for the measurement of dynamic co-activation patterns by increasing the robustness and reproducibility of the CAPs.



中文翻译:

使用多波段多回波成像提高动态功能连接共激活模式分析的鲁棒性和可重复性

新出现的证据表明,功能连接是动态的,并且会在扫描过程中发生变化。此外,连接模式可能源于以秒为单位的短时间共同激活。最近,引入了动态共激活模式 (CAP) 分析来检查由各个时间点产生的体素的共激活。本研究的目的是将 CAP 分析应用于使用高级多波段多回波 (MBME) 序列收集的静息状态 fMRI 数据,并与具有单个回波的多波段 (MB) 序列进行比较。检查了来自 28 名健康对照受试者的数据。受试者接受了两次静息状态扫描,一次 MBME 和一次 MB,并且 19 名受试者在两周内返回进行重复扫描。数据预处理包括高级去噪,即针对 MBME 数据的多回波独立分量分析 (ME-ICA) 和针对 MB 数据的基于 ICA 的运动伪影自动去除策略 (ICA-AROMA)。CAPs 分析是使用新发布的 TbCAPs 工具箱进行的。使用基于种子和无种子的方法提取 CAP。使用 k 均值聚类对时间点进行聚类。在 MBME 和 MB 数据集之间比较了以下指标:每个 CAP 中的平均激活、每个时间点和它分配给的质心 CAP 之间的空间相关性和均方误差 (MSE)、分配给同一 CAP 的时间点之间的数据集内方差,以及每个 CAP 的会话间空间相关性。大多数 CAP 的 MBME 数据的共激活得到加强。对于 MBME 数据,每个时间点与其分配的质心 CAP 之间的空间相关性和 MSE 分别较高和较低。MBME 数据的数据集内方差也较低。最后,MBME 数据的会话间空间相关性更高。总体而言,我们的研究结果表明,高级 MBME 序列是通过提高 CAP 的稳健性和可重复性来测量动态共激活模式的有前途的途径。

更新日期:2021-09-07
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