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Out of patterns, the euchromatic B chromosome of the grasshopper Abracris flavolineata is not enriched in high-copy repeats
Heredity ( IF 3.1 ) Pub Date : 2021-09-04 , DOI: 10.1038/s41437-021-00470-5
Diogo Milani 1 , Francisco J Ruiz-Ruano 2, 3 , Juan Pedro M Camacho 4 , Diogo C Cabral-de-Mello 1
Affiliation  

In addition to the normal set of standard (A) chromosomes, some eukaryote species harbor supernumerary (B) chromosomes. In most cases, B chromosomes show differential condensation with respect to A chromosomes and display dark C-bands of heterochromatin, and some of them are highly enriched in repetitive DNA. Here we perform a comprehensive NGS (next-generation sequencing) analysis of the repeatome in the grasshopper Abracris flavolineata aimed at uncovering the molecular composition and origin of its B chromosome. Our results have revealed that this B chromosome shows a DNA repeat content highly similar to the DNA repeat content observed for euchromatic (non-C-banded) regions of A chromosomes. Moreover, this B chromosome shows little enrichment for high-copy repeats, with only a few elements showing overabundance in B-carrying individuals compared to the 0B individuals. Consequently, the few satellite DNAs (satDNAs) mapping on the B chromosome were mostly restricted to its centromeric and telomeric regions, and they displayed much smaller bands than those observed on the A chromosomes. Our data support the intraspecific origin of the B chromosome from the longest autosome by misdivision, isochromosome formation, and additional restructuring, with accumulation of specific repeats in one or both B chromosome arms, yielding a submetacentric B. Finally, the absence of B-specific satDNAs, which are frequent in other species, along with its euchromatic nature, suggest that this B chromosome arose recently and might still be starting a heterochromatinization process. On this basis, it could be a good model to investigate the initial steps of B chromosome evolution.



中文翻译:

模式之外,黄蚱蜢的常染色质 B 染色体不富含高拷贝重复

除了正常的一组标准 (A) 染色体外,一些真核生物物种还含有多余的 (B) 染色体。在大多数情况下,B 染色体相对于 A 染色体显示出不同的凝聚,并显示出异染色质的深色 C 带,其中一些染色体高度富集重复 DNA。在这里,我们对蚱蜢Abracris flavolineata中的重复组进行了全面的 NGS(下一代测序)分析旨在揭示其B染色体的分子组成和起源。我们的研究结果表明,该 B 染色体显示的 DNA 重复内容与在 A 染色体的常染色质(非 C 带)区域观察到的 DNA 重复内容高度相似。此外,与 0B 个体相比,该 B 染色体几乎没有显示出高拷贝重复的富集,只有少数元素在携带 B 的个体中显示出过多。因此,B 染色体上的少数卫星 DNA (satDNA) 大多局限于其着丝粒和端粒区域,并且它们显示的条带比在 A 染色体上观察到的要小得多。我们的数据支持来自最长常染色体的 B 染色体的种内起源是通过错误分裂、等染色体形成和额外的重组,在一个或两个 B 染色体臂中积累特定重复序列,产生亚中着丝粒 B。最后,缺乏在其他物种中常见的 B 特异性 satDNA 及其常染色性,表明该 B 染色体最近出现并且可能仍在开始异染色质化过程。在此基础上,它可能是研究 B 染色体进化初始步骤的一个很好的模型。

更新日期:2021-09-04
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