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Inferring the Main Drivers of SARS-CoV-2 Global Transmissibility by Feature Selection Methods
GeoHealth ( IF 4.3 ) Pub Date : 2021-09-02 , DOI: 10.1029/2021gh000432
Marko Djordjevic 1 , Igor Salom 2 , Sofija Markovic 1 , Andjela Rodic 1 , Ognjen Milicevic 3 , Magdalena Djordjevic 2
Affiliation  

Identifying the main environmental drivers of SARS-CoV-2 transmissibility in the population is crucial for understanding current and potential future outbursts of COVID-19 and other infectious diseases. To address this problem, we concentrate on the basic reproduction number R0, which is not sensitive to testing coverage and represents transmissibility in an absence of social distancing and in a completely susceptible population. While many variables may potentially influence R0, a high correlation between these variables may obscure the result interpretation. Consequently, we combine Principal Component Analysis with feature selection methods from several regression-based approaches to identify the main demographic and meteorological drivers behind R0. We robustly obtain that country's wealth/development (GDP per capita or Human Development Index) is the most important R0 predictor at the global level, probably being a good proxy for the overall contact frequency in a population. This main effect is modulated by built-up area per capita (crowdedness in indoor space), onset of infection (likely related to increased awareness of infection risks), net migration, unhealthy living lifestyle/conditions including pollution, seasonality, and possibly BCG vaccination prevalence. Also, we argue that several variables that significantly correlate with transmissibility do not directly influence R0 or affect it differently than suggested by naïve analysis.

中文翻译:

通过特征选择方法推断 SARS-CoV-2 全球传播的主要驱动因素

确定 SARS-CoV-2 在人群中传播的主要环境驱动因素对于了解 COVID-19 和其他传染病当前和未来潜在的爆发至关重要。为了解决这个问题,我们关注基本传染数R 0,它对测试覆盖率不敏感,代表在没有社交距离和完全易感人群中的传播性。虽然许多变量可能会影响R 0,但这些变量之间的高度相关性可能会模糊结果解释。因此,我们将主成分分析与几种基于回归的方法中的特征选择方法相结合,以确定R 0背后的主要人口和气象驱动因素。我们稳健地得出,国家的财富/发展(人均 GDP 或人类发展指数)是全球层面最重要的R 0预测因子,可能是人口总体接触频率的良好代理。这一主要影响受到人均建筑面积(​​室内空间的拥挤程度)、感染的发生(可能与感染风险意识的提高有关)、净迁移、不健康的生活方式/条件(包括污染、季节性和可能的​​卡介苗接种)的调节流行率。此外,我们认为与传递性显着相关的几个变量不会直接影响R 0或对它的影响与朴素分析所建议的不同。
更新日期:2021-09-19
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