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Chitinophaga chungangae sp. nov., isolated from a Korean grape garden and its potential to biosynthesize ginsenoside Rg2
Archives of Microbiology ( IF 2.3 ) Pub Date : 2021-08-20 , DOI: 10.1007/s00203-021-02533-x
Md Amdadul Huq 1 , Shahina Akter 2
Affiliation  

A ginsenoside Rg2-producing, Gram stain-negative, aerobic, catalase and oxidase-positive, rod-shaped, non-motile and orange pigmented novel bacterium designated strain MAH-28 T was isolated from soil sample of a grape garden. Strain MAH-28 T hydrolyzed aesculin, casein and DNA. Flexirubin-type pigments are present. Phylogenetic analysis based on 16S rRNA gene sequence showed that strain MAH-28 T formed a cluster within the genus Chitinophaga and the most close relatives were Chitinophaga alhagiae T22T (98.9% 16S rRNA gene sequence similarity), Chitinophaga humicola Ktm-2 T (98.8%), Chitinophaga barathri YLT18T (98.3%) and Chitinophaga lutea ZY74T (97.4%). The novel strain MAH-28 T has a draft genome size of 6,043,180 bp (14 contigs), annotated with 4,863 protein-coding genes, 53 tRNA and 6 rRNA genes. The ANI and dDDH values between strain MAH-28 T and the closely related type strains were in the range of 76.0–83.4% and 20.3–26.7%, respectively. The novel strain MAH-28 T was able to synthesize ginsenoside Rg2 from major ginsenoside Re. The genome annotation revealed 152 carbohydrate genes which may involve with the synthesis of ginsenoside Rg2. The respiratory quinone of strain MAH-28 T was MK-7 and the dominant cellular fatty acids were C15:0 iso, C16:1 ω5c and C17:0 iso 3-OH. The DNA G + C content of strain MAH-28 T was 53.3 mol%. Based on the phenotypic, chemotaxonomic and phylogenetic studies, strain MAH-28 T represents a new member of genus Chitinophaga for which the name Chitinophaga chungangae sp. nov. is proposed with type strain MAH-28 T (= KACC 19968 T = CGMCC 1.16605 T).



中文翻译:

Chitinophaga chungangae sp。nov., 从韩国葡萄园中分离出来及其生物合成人参皂苷 Rg2 的潜力

从葡萄园的土壤样品中分离出一种产生人参皂苷 Rg2、革兰氏染色阴性、好氧、过氧化氢酶和氧化酶阳性、杆状、非运动和橙色色素的新型细菌,命名为 MAH-28  T。菌株 MAH-28  T水解七叶苷、酪蛋白和 DNA。存在 Flexirubin 型色素。基于16S rRNA基因序列的系统发育分析表明,菌株MAH-28  T在几丁质噬菌属内形成一个簇,最亲近的是Chitinophaga alhagiae T22 T(98.9% 16S rRNA基因序列相似性)、Chitinophaga humicola Ktm-2  T(98.8 %) %),甲壳虫YLT18 T (98.3%) 和Chitinophaga lutea ZY74 T (97.4%)。新菌株 MAH-28  T的基因组草图大小为 6,043,180 bp(14 个重叠群),注释有 4,863 个蛋白质编码基因、53 个 tRNA 和 6 个 rRNA 基因。 菌株 MAH-28 T和密切相关的模式菌株之间的 ANI 和 dDDH 值分别在 76.0-83.4% 和 20.3-26.7% 的范围内。新型菌株 MAH-28  T能够从主要的人参皂苷 Re 合成人参皂苷 Rg2。基因组注释揭示了152个可能参与人参皂苷Rg2合成的碳水化合物基因。 菌株MAH-28 T的呼吸醌为MK-7,优势细胞脂肪酸为C15:0 iso,C 16:1 ω 5 c和 C 17:0 iso 3-OH。 菌株MAH-28 T的DNA G+C含量为53.3 mol%。基于表型、化学分类学和系统发育研究,菌株 MAH-28  T代表了甲壳素属的一个新成员,其名称为 Chungangae sp。十一月 建议使用类型应变 MAH-28  T(= KACC 19968  T  = CGMCC 1.16605  T)。

更新日期:2021-10-09
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