Asian dust storms have long been a major environmental concern in China, affecting the lives of about one billion people. However, it is unclear whether the mechanisms responsible for Asian dust storms during the Holocene varied on different timescales, and thus it is unclear whether there was a shift from a natural forcing to an anthropogenic forcing of dust storms. We reconstructed a high-resolution Holocene record of dust storms from the sediments of an undisturbed alpine lake on the Chinese Loess Plateau. We found that Asian dust storm activity generally increased during the Holocene, with the largest fluctuations occurring during the past 2000 years. The increase in dust storm activity was in contrast to the decrease in East Asian winter monsoon (EAWM) intensity during the Holocene, indicating that the EAWM played a limited role in modulating dust storms. By contrast, the increase in dust storms corresponded to a decrease in EASM precipitation. This demonstrates that EASM precipitation was the dominant control of dust storm activity on a millennial timescale, because decreased EASM precipitation expanded the desert area and thus increased the dust storm activity. The increasing intensity of human activity in the region since the Bronze Age resulted in an acceleration of dust storm activity against the background of decreased EASM precipitation. As human disturbance continued to intensify, beginning at least at ~2 cal ka BP, increased dust storms were closely linked to increasing human populations in the dust source regions, and there is a strong temporal coherence between increased dust storms and higher EASM precipitation. This was completely different from when natural processes are dominant. During that period, fewer dust storms occurred during periods of a strengthened EASM. Therefore, there was a shift from a natural forcing to an anthropogenic forcing of dust storms on a multi-decadal to centennial timescale, and was a mode in which “human activity overtook the EASM as the dominant control of the Earth surface system”.