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Streptomonospora litoralis sp. nov., a halophilic thiopeptides producer isolated from sand collected at Cuxhaven beach
Antonie van Leeuwenhoek ( IF 1.8 ) Pub Date : 2021-08-06 , DOI: 10.1007/s10482-021-01609-4
Shadi Khodamoradi 1 , Richard L Hahnke 2 , Yvonne Mast 2 , Peter Schumann 2 , Peter Kämpfer 3 , Michael Steinert 4 , Christian Rückert 5 , Frank Surup 6 , Manfred Rohde 7 , Joachim Wink 1
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Strain M2T was isolated from the beach of Cuxhaven, Wadden Sea, Germany, in course of a program to attain new producers of bioactive natural products. Strain M2T produces litoralimycin and sulfomycin-type thiopeptides. Bioinformatic analysis revealed a potential biosynthetic gene cluster encoding for the M2T thiopeptides. The strain is Gram-stain-positive, rod shaped, non-motile, spore forming, showing a yellow colony color and forms extensively branched substrate mycelium and aerial hyphae. Inferred from the 16S rRNA gene phylogeny strain M2T affiliates with the genus Streptomonospora. It shows 96.6% 16S rRNA gene sequence similarity to the type species Streptomonospora salina DSM 44593 T and forms a distinct branch with Streptomonospora sediminis DSM 45723 T with 97.0% 16S rRNA gene sequence similarity. Genome-based phylogenetic analysis revealed that M2T is closely related to Streptomonospora alba YIM 90003 T with a digital DNA-DNA hybridisation (dDDH) value of 26.6%. The predominant menaquinones of M2T are MK-10(H6), MK-10(H8), and MK-11(H6) (> 10%). Major cellular fatty acids are iso-C16:0, anteiso C17:0 and C18:0 10-methyl. The polar lipid profile consisted of diphosphatidylglycerol phosphatidyl glycerol, phosphatidylinositol, phosphatidylcholine, phosphatidylethanolamine, three glycolipids, two unknown phospholipids, and two unknown lipids. The genome size of type strain M2T is 5,878,427 bp with 72.1 mol % G + C content. Based on the results obtained from phylogenetic and chemotaxonomic studies, strain M2T (= DSM 106425 T = NCCB 100650 T) is considered to represent a novel species within the genus Streptomonospora for which the name Streptomonospora litoralis sp. nov. is proposed.



中文翻译:

Streptomonospora litoralis sp。nov.,从库克斯港海滩收集的沙子中分离出的嗜盐硫肽生产商

菌株 M2 T是从德国瓦登海的库克斯港海滩分离出来的,该项目旨在获得生物活性天然产品的新生产者。菌株 M2 T产生利托利霉素和磺霉素型硫肽。生物信息学分析揭示了编码 M2 T硫肽的潜在生物合成基因簇。该菌株为革兰氏染色阳性、杆状、不运动、形成孢子,呈黄色菌落颜色并形成广泛分枝的底物菌丝体和气生菌丝。从 16S rRNA 基因系统发育菌株推断 M2 T隶属于链单孢菌属。它显示出 96.6% 的 16S rRNA 基因序列与模式物种Strepomomonospora salina的相似性DSM 44593  TStreptomonospora sediminis DSM 45723  T形成一个独特的分支,具有 97.0% 的 16S rRNA 基因序列相似性。基于基因组的系统发育分析表明,M2 T与白链单胞YIM 90003  T密切相关,数字 DNA-DNA 杂交 (dDDH) 值为 26.6%。M2 T的主要甲基萘醌是 MK-10(H 6 )、MK-10(H 8 ) 和 MK-11(H 6 ) (> 10%)。主要的细胞脂肪酸是 iso-C 16:0、 anteiso C 17:0和 C 18:010-甲基。极性脂质谱由二磷脂酰甘油磷脂酰甘油、磷脂酰肌醇、磷脂酰胆碱、磷脂酰乙醇胺、三种糖脂、两种未知磷脂和两种未知脂质组成。M2 T型菌株的基因组大小为 5,878,427 bp,G + C 含量为 72.1 mol %。根据从系统发育和化学分类学研究中获得的结果,菌株 M2 T (= DSM 106425  T  = NCCB 100650  T ) 被认为代表链单孢菌属中的一个新物种其名称为Strepomonospora litoralis sp。十一月 被提议。

更新日期:2021-08-09
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