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SAMPL7 physical property prediction from EC-RISM theory
Journal of Computer-Aided Molecular Design ( IF 3.0 ) Pub Date : 2021-07-19 , DOI: 10.1007/s10822-021-00410-9
Nicolas Tielker 1 , Stefan Güssregen 2 , Stefan M Kast 1
Affiliation  

Inspired by the successful application of the embedded cluster reference interaction site model (EC-RISM), a combination of quantum–mechanical calculations with three-dimensional RISM theory to predict Gibbs energies of species in solution within the SAMPL6.1 (acidity constants, pKa) and SAMPL6.2 (octanol–water partition coefficients, log P) the methodology was applied to the recent SAMPL7 physical property challenge on aqueous pKa and octanol–water log P values. Not part of the challenge but provided by the organizers, we also computed distribution coefficients log D7.4 from predicted pKa and log P data. While macroscopic pKa predictions compared very favorably with experimental data (root mean square error, RMSE 0.72 pK units), the performance of the log P model (RMSE 1.84) fell behind expectations from the SAMPL6.2 challenge, leading to reasonable log D7.4 predictions (RMSE 1.69) from combining the independent calculations. In the post-submission phase, conformations generated by different methodology yielded results that did not significantly improve the original predictions. While overall satisfactory compared to previous log D challenges, the predicted data suggest that further effort is needed for optimizing the robustness of the partition coefficient model within EC-RISM calculations and for shaping the agreement between experimental conditions and the corresponding model description.



中文翻译:


EC-RISM 理论的 SAMPL7 物理性质预测



受嵌入式簇参考相互作用位点模型 (EC-RISM) 成功应用的启发,量子力学计算与三维 RISM 理论相结合,可预测 SAMPL6.1 溶液中物质的吉布斯能量(酸度常数,p Ka )和 SAMPL6.2(辛醇-水分配系数,log P )该方法应用于最近针对水性p Ka辛醇-水 log P值的 SAMPL7 物理性质挑战。这不是挑战的一部分,但由组织者提供,我们还根据预测的 p K a和 log P数据计算了分布系数 log D 7.4 。虽然宏观 p K a预测与实验数据相比非常有利(均方根误差,RMSE 0.72 p K单位),但 log P模型的性能 (RMSE 1.84) 落后于 SAMPL6.2 挑战的预期,导致合理的对数结合独立计算得出的D 7.4预测(RMSE 1.69)。在提交后阶段,不同方法生成的构象产生的结果并没有显着改善原始预测。虽然与之前的 log D挑战相比总体令人满意,但预测数据表明,需要进一步努力优化 EC-RISM 计算中分配系数模型的鲁棒性,以及形成实验条件和相应模型描述之间的一致性。

更新日期:2021-07-19
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