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Structure-based molecular networking for the target discovery of novel germicidin derivatives from the sponge-associated streptomyces sp. 18A01
The Journal of Antibiotics ( IF 2.1 ) Pub Date : 2021-07-16 , DOI: 10.1038/s41429-021-00447-w
Yan Bai 1 , Ping Yi 2 , Yun Zhang 3 , Jiangchun Hu 1 , Ying Wang 1 , Jianhua Ju 3 , Huaqi Pan 1
Affiliation  

Four new α-pyrone derivatives, named germicidins P-S (1-4) along with nine known analogues (5-13) were discovered from the sponge-associated Streptomyces sp. 18A01 guided by Global Natural Products Social (GNPS) molecular networking, the LC-DAD-MS profile, and hexokinase II (HK2) inhibitory activity. The structures of 1-13 were elucidated by analysis of their HRMS, optical rotation, and NMR spectroscopic data. The absolute configurations of germicidin P (1) and germicidin Q (2) were determined on the basis of comparisons of experimental and theoretically calculated ECD spectra. Bioactivities of the isolated compounds were assayed against human HK2. The bioassay results showed that compounds 1-4 and 11-13 exhibited significant inhibitory activities against HK2, with IC50 values ranging from 5.1 to 11.0 μM. A molecular docking simulation demonstrated that these germicidins were docked in the inner active site tunnel of HK2. Interestingly, the amino residue Arg91 has a better binding affinity and efficacy than the amino residue Asn89 in the process of HK2 binding to the ligands, resulting in better hexokinase inhibitory activity. This result provided a valuable perspective for better understanding their HK2 inhibition activity.



中文翻译:

基于结构的分子网络,用于从海绵相关链霉菌中发现新型杀菌素衍生物。18A01

四个新的α吡喃酮衍生物,命名为germicidins PS(1 - 4与九个已知类似物(沿)5 - 13)从海绵相关发现链霉菌属。18A01 以全球天然产物社会 (GNPS) 分子网络、LC-DAD-MS 谱和己糖激酶 II (HK2) 抑制活性为指导。的结构1 - 13由他们的HRMS,旋光度,和NMR光谱数据的分析阐明。杀菌素 P ( 1 ) 和杀菌素 Q ( 2 )的绝对构型) 是在比较实验和理论计算的 ECD 光谱的基础上确定的。针对人HK2测定了分离化合物的生物活性。生物测定结果表明,化合物1 - 4 和11 - 13表现出显著抑制活性对HK2,用IC 50值范围从 5.1 到 11.0 μM。分子对接模拟表明,这些杀菌素被对接在 HK2 的内部活性位点隧道中。有趣的是,在HK2与配体结合的过程中,氨基残基Arg91比氨基残基Asn89具有更好的结合亲和力和功效,从而产生更好的己糖激酶抑制活性。这一结果为更好地理解它们的 HK2 抑制活性提供了有价值的视角。

更新日期:2021-07-16
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