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A novel one-step amplification refractory mutation system PCR (ARMS-PCR) for differentiation of canine parvovirus-2 variants
Virus Genes ( IF 1.9 ) Pub Date : 2021-07-13 , DOI: 10.1007/s11262-021-01861-w
Anusha Dema 1 , Vishweshwar Kumar Ganji 1 , Narasimha Reddy Yella 2 , Kalyani Putty 1
Affiliation  

Enteritis caused by CPV-2 antigenic variants (CPV-2a, 2b, and 2c) is frequently reported in dogs worldwide leading to significant morbidity and mortality. Here, we describe about a simple, single-step, ARMS-PCR strategy targeting the mutant 426 amino acid of VP2 to differentiate CPV-2 antigenic types. A total of 150 fecal samples were subjected to ARMS-PCR of which 18 were typed as CPV-2a, 79 were typed as CPV-2b, and 6 were typed as CPV-2c. The ARMS-PCR results were validated by randomly sequencing partial VP2 gene of 14 samples. Phylogenetic analysis of partial VP2 gene sequencing of each of the CPV-2 variants revealed that CPV-2a and CPV-2b isolates formed a separate clade of Indian lineage, while CPV-2c shared common evolutionary origin with Asian lineage. The developed technique is first of its kind, one-step, rapid, sequencing independent method for typing of CPV-2 antigenic variants.



中文翻译:

一种用于区分犬细小病毒 2 变种的新型一步扩增难治性突变系统 PCR (ARMS-PCR)

由 CPV-2 抗原变体(CPV-2a、2b 和 2c)引起的肠炎在世界范围内的狗中经常报道,导致显着的发病率和死亡率。在这里,我们描述了一种简单的、单步的、ARMS-PCR 策略,该策略针对 VP2 的 426 个突变氨基酸来区分 CPV-2 抗原类型。总共150份粪便样本进行了ARMS-PCR,其中18份为CPV-2a,79份为CPV-2b,6份为CPV-2c。通过对14个样本的部分VP2基因进行随机测序来验证ARMS-PCR结果。部分VP2的系统发育分析每个 CPV-2 变体的基因测序显示 CPV-2a 和 CPV-2b 分离株形成了一个独立的印度谱系进化枝,而 CPV-2c 与亚洲谱系具有共同的进化起源。所开发的技术是同类中首创的、一步、快速、独立于测序的 CPV-2 抗原变体分型方法。

更新日期:2021-07-13
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