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Genome Warehouse: A Public Repository Housing Genome-scale Data
Genomics, Proteomics & Bioinformatics ( IF 11.5 ) Pub Date : 2021-06-24 , DOI: 10.1016/j.gpb.2021.04.001
Meili Chen 1 , Yingke Ma 1 , Song Wu 2 , Xinchang Zheng 1 , Hongen Kang 2 , Jian Sang 2 , Xingjian Xu 2 , Lili Hao 1 , Zhaohua Li 2 , Zheng Gong 2 , Jingfa Xiao 2 , Zhang Zhang 2 , Wenming Zhao 2 , Yiming Bao 2
Affiliation  

The Genome Warehouse (GWH) is a public repository housing genome assembly data for a wide range of species and delivering a series of web services for genome data submission, storage, release, and sharing. As one of the core resources in the National Genomics Data Center (NGDC), part of the China National Center for Bioinformation (CNCB; https://ngdc.cncb.ac.cn), GWH accepts both full and partial (chloroplast, mitochondrion, and plasmid) genome sequences with different assembly levels, as well as an update of existing genome assemblies. For each assembly, GWH collects detailed genome-related metadata of biological project, biological sample, and genome assembly, in addition to genome sequence and annotation. To archive high-quality genome sequences and annotations, GWH is equipped with a uniform and standardized procedure for quality control. Besides basic browse and search functionalities, all released genome sequences and annotations can be visualized with JBrowse. By May 21, 2021, GWH has received 19,124 direct submissions covering a diversity of 1108 species and has released 8772 of them. Collectively, GWH serves as an important resource for genome-scale data management and provides free and publicly accessible data to support research activities throughout the world. GWH is publicly accessible at https://ngdc.cncb.ac.cn/gwh.



中文翻译:


基因组仓库:存储基因组规模数据的公共存储库



基因组仓库(GWH) 是一个公共存储库,存储多种物种的基因组组装数据,并提供一系列用于基因组数据提交、存储、发布和共享的网络服务。作为国家生物信息中心(CNCB;https://ngdc.cncb.ac.cn)国家基因组数据中心(NGDC)的核心资源之一,GWH接受完整和部分(叶绿体、线粒体)和质粒)具有不同组装水平的基因组序列,以及现有基因组组装的更新。对于每个组装,除了基因组序列和注释之外,GWH 还收集生物项目、生物样本和基因组组装的详细基因组相关元数据。为了存档高质量的基因组序列和注释,GWH 配备了统一且标准化的质量控制程序。除了基本的浏览和搜索功能外,所有发布的基因组序列和注释都可以使用 JBrowse 进行可视化。截至 2021 年 5 月 21 日,GWH 已收到 19,124 份直接提交的材料,涵盖 1108 个物种的多样性,并已释放其中 8772 个。总的来说,GWH 是基因组规模数据管理的重要资源,并提供免费且可公开访问的数据来支持世界各地的研究活动。 GWH 可通过 https://ngdc.cncb.ac.cn/gwh 公开访问。

更新日期:2021-06-24
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