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The trans-ancestral genomic architecture of glycemic traits
Nature Genetics ( IF 31.7 ) Pub Date : 2021-05-31 , DOI: 10.1038/s41588-021-00852-9
Ji Chen , Cassandra N. Spracklen , Gaëlle Marenne , Arushi Varshney , Laura J. Corbin , Jian’an Luan , Sara M. Willems , Ying Wu , Xiaoshuai Zhang , Momoko Horikoshi , Thibaud S. Boutin , Reedik Mägi , Johannes Waage , Ruifang Li-Gao , Kei Hang Katie Chan , Jie Yao , Mila D. Anasanti , Audrey Y. Chu , Annique Claringbould , Jani Heikkinen , Jaeyoung Hong , Jouke-Jan Hottenga , Shaofeng Huo , Marika A. Kaakinen , Tin Louie , Winfried März , Hortensia Moreno-Macias , Anne Ndungu , Sarah C. Nelson , Ilja M. Nolte , Kari E. North , Chelsea K. Raulerson , Debashree Ray , Rebecca Rohde , Denis Rybin , Claudia Schurmann , Xueling Sim , Lorraine Southam , Isobel D. Stewart , Carol A. Wang , Yujie Wang , Peitao Wu , Weihua Zhang , Tarunveer S. Ahluwalia , Emil V. R. Appel , Lawrence F. Bielak , Jennifer A. Brody , Noël P. Burtt , Claudia P. Cabrera , Brian E. Cade , Jin Fang Chai , Xiaoran Chai , Li-Ching Chang , Chien-Hsiun Chen , Brian H. Chen , Kumaraswamy Naidu Chitrala , Yen-Feng Chiu , Hugoline G. de Haan , Graciela E. Delgado , Ayse Demirkan , Qing Duan , Jorgen Engmann , Segun A. Fatumo , Javier Gayán , Franco Giulianini , Jung Ho Gong , Stefan Gustafsson , Yang Hai , Fernando P. Hartwig , Jing He , Yoriko Heianza , Tao Huang , Alicia Huerta-Chagoya , Mi Yeong Hwang , Richard A. Jensen , Takahisa Kawaguchi , Katherine A. Kentistou , Young Jin Kim , Marcus E. Kleber , Ishminder K. Kooner , Shuiqing Lai , Leslie A. Lange , Carl D. Langefeld , Marie Lauzon , Man Li , Symen Ligthart , Jun Liu , Marie Loh , Jirong Long , Valeriya Lyssenko , Massimo Mangino , Carola Marzi , May E. Montasser , Abhishek Nag , Masahiro Nakatochi , Damia Noce , Raymond Noordam , Giorgio Pistis , Michael Preuss , Laura Raffield , Laura J. Rasmussen-Torvik , Stephen S. Rich , Neil R. Robertson , Rico Rueedi , Kathleen Ryan , Serena Sanna , Richa Saxena , Katharina E. Schraut , Bengt Sennblad , Kazuya Setoh , Albert V. Smith , Thomas Sparsø , Rona J. Strawbridge , Fumihiko Takeuchi , Jingyi Tan , Stella Trompet , Erik van den Akker , Peter J. van der Most , Niek Verweij , Mandy Vogel , Heming Wang , Chaolong Wang , Nan Wang , Helen R. Warren , Wanqing Wen , Tom Wilsgaard , Andrew Wong , Andrew R. Wood , Tian Xie , Mohammad Hadi Zafarmand , Jing-Hua Zhao , Wei Zhao , Najaf Amin , Zorayr Arzumanyan , Arne Astrup , Stephan J. L. Bakker , Damiano Baldassarre , Marian Beekman , Richard N. Bergman , Alain Bertoni , Matthias Blüher , Lori L. Bonnycastle , Stefan R. Bornstein , Donald W. Bowden , Qiuyin Cai , Archie Campbell , Harry Campbell , Yi Cheng Chang , Eco J. C. de Geus , Abbas Dehghan , Shufa Du , Gudny Eiriksdottir , Aliki Eleni Farmaki , Mattias Frånberg , Christian Fuchsberger , Yutang Gao , Anette P. Gjesing , Anuj Goel , Sohee Han , Catharina A. Hartman , Christian Herder , Andrew A. Hicks , Chang-Hsun Hsieh , Willa A. Hsueh , Sahoko Ichihara , Michiya Igase , M. Arfan Ikram , W. Craig Johnson , Marit E. Jørgensen , Peter K. Joshi , Rita R. Kalyani , Fouad R. Kandeel , Tomohiro Katsuya , Chiea Chuen Khor , Wieland Kiess , Ivana Kolcic , Teemu Kuulasmaa , Johanna Kuusisto , Kristi Läll , Kelvin Lam , Deborah A. Lawlor , Nanette R. Lee , Rozenn N. Lemaitre , Honglan Li , Shih-Yi Lin , Jaana Lindström , Allan Linneberg , Jianjun Liu , Carlos Lorenzo , Tatsuaki Matsubara , Fumihiko Matsuda , Geltrude Mingrone , Simon Mooijaart , Sanghoon Moon , Toru Nabika , Girish N. Nadkarni , Jerry L. Nadler , Mari Nelis , Matt J. Neville , Jill M. Norris , Yasumasa Ohyagi , Annette Peters , Patricia A. Peyser , Ozren Polasek , Qibin Qi , Dennis Raven , Dermot F. Reilly , Alex Reiner , Fernando Rivideneira , Kathryn Roll , Igor Rudan , Charumathi Sabanayagam , Kevin Sandow , Naveed Sattar , Annette Schürmann , Jinxiu Shi , Heather M. Stringham , Kent D. Taylor , Tanya M. Teslovich , Betina Thuesen , Paul R. H. J. Timmers , Elena Tremoli , Michael Y. Tsai , Andre Uitterlinden , Rob M. van Dam , Diana van Heemst , Astrid van Hylckama Vlieg , Jana V. van Vliet-Ostaptchouk , Jagadish Vangipurapu , Henrik Vestergaard , Tao Wang , Ko Willems van Dijk , Tatijana Zemunik , Gonçalo R. Abecasis , Linda S. Adair , Carlos Alberto Aguilar-Salinas , Marta E. Alarcón-Riquelme , Ping An , Larissa Aviles-Santa , Diane M. Becker , Lawrence J. Beilin , Sven Bergmann , Hans Bisgaard , Corri Black , Michael Boehnke , Eric Boerwinkle , Bernhard O. Böhm , Klaus Bønnelykke , D. I. Boomsma , Erwin P. Bottinger , Thomas A. Buchanan , Mickaël Canouil , Mark J. Caulfield , John C. Chambers , Daniel I. Chasman , Yii-Der Ida Chen , Ching-Yu Cheng , Francis S. Collins , Adolfo Correa , Francesco Cucca , H. Janaka de Silva , George Dedoussis , Sölve Elmståhl , Michele K. Evans , Ele Ferrannini , Luigi Ferrucci , Jose C. Florez , Paul W. Franks , Timothy M. Frayling , Philippe Froguel , Bruna Gigante , Mark O. Goodarzi , Penny Gordon-Larsen , Harald Grallert , Niels Grarup , Sameline Grimsgaard , Leif Groop , Vilmundur Gudnason , Xiuqing Guo , Anders Hamsten , Torben Hansen , Caroline Hayward , Susan R. Heckbert , Bernardo L. Horta , Wei Huang , Erik Ingelsson , Pankow S. James , Marjo-Ritta Jarvelin , Jost B. Jonas , J. Wouter Jukema , Pontiano Kaleebu , Robert Kaplan , Sharon L. R. Kardia , Norihiro Kato , Sirkka M. Keinanen-Kiukaanniemi , Bong-Jo Kim , Mika Kivimaki , Heikki A. Koistinen , Jaspal S. Kooner , Antje Körner , Peter Kovacs , Diana Kuh , Meena Kumari , Zoltan Kutalik , Markku Laakso , Timo A. Lakka , Lenore J. Launer , Karin Leander , Huaixing Li , Xu Lin , Lars Lind , Cecilia Lindgren , Simin Liu , Ruth J. F. Loos , Patrik K. E. Magnusson , Anubha Mahajan , Andres Metspalu , Dennis O. Mook-Kanamori , Trevor A. Mori , Patricia B. Munroe , Inger Njølstad , Jeffrey R. O’Connell , Albertine J. Oldehinkel , Ken K. Ong , Sandosh Padmanabhan , Colin N. A. Palmer , Nicholette D. Palmer , Oluf Pedersen , Craig E. Pennell , David J. Porteous , Peter P. Pramstaller , Michael A. Province , Bruce M. Psaty , Lu Qi , Leslie J. Raffel , Rainer Rauramaa , Susan Redline , Paul M. Ridker , Frits R. Rosendaal , Timo E. Saaristo , Manjinder Sandhu , Jouko Saramies , Neil Schneiderman , Peter Schwarz , Laura J. Scott , Elizabeth Selvin , Peter Sever , Xiao-ou Shu , P. Eline Slagboom , Kerrin S. Small , Blair H. Smith , Harold Snieder , Tamar Sofer , Thorkild I. A. Sørensen , Tim D. Spector , Alice Stanton , Claire J. Steves , Michael Stumvoll , Liang Sun , Yasuharu Tabara , E. Shyong Tai , Nicholas J. Timpson , Anke Tönjes , Jaakko Tuomilehto , Teresa Tusie , Matti Uusitupa , Pim van der Harst , Cornelia van Duijn , Veronique Vitart , Peter Vollenweider , Tanja G. M. Vrijkotte , Lynne E. Wagenknecht , Mark Walker , Ya X. Wang , Nick J. Wareham , Richard M. Watanabe , Hugh Watkins , Wen B. Wei , Ananda R. Wickremasinghe , Gonneke Willemsen , James F. Wilson , Tien-Yin Wong , Jer-Yuarn Wu , Anny H. Xiang , Lisa R. Yanek , Loïc Yengo , Mitsuhiro Yokota , Eleftheria Zeggini , Wei Zheng , Alan B. Zonderman , Jerome I. Rotter , Anna L. Gloyn , Mark I. McCarthy , Josée Dupuis , James B. Meigs , Robert A. Scott , Inga Prokopenko , Aaron Leong , Ching-Ti Liu , Stephen C. J. Parker , Karen L. Mohlke , Claudia Langenberg , Eleanor Wheeler , Andrew P. Morris , Inês Barroso , Hugoline G. de Haan , Erik van den Akker , Peter J. van der Most , Eco J. C. de Geus , Rob M. van Dam , Diana van Heemst , Astrid van Hylckama Vlieg , Ko van Willems van Dijk , H. Janaka de Silva , Pim van der Harst , Cornelia van Duijn , ,

Glycemic traits are used to diagnose and monitor type 2 diabetes and cardiometabolic health. To date, most genetic studies of glycemic traits have focused on individuals of European ancestry. Here we aggregated genome-wide association studies comprising up to 281,416 individuals without diabetes (30% non-European ancestry) for whom fasting glucose, 2-h glucose after an oral glucose challenge, glycated hemoglobin and fasting insulin data were available. Trans-ancestry and single-ancestry meta-analyses identified 242 loci (99 novel; P < 5 × 10−8), 80% of which had no significant evidence of between-ancestry heterogeneity. Analyses restricted to individuals of European ancestry with equivalent sample size would have led to 24 fewer new loci. Compared with single-ancestry analyses, equivalent-sized trans-ancestry fine-mapping reduced the number of estimated variants in 99% credible sets by a median of 37.5%. Genomic-feature, gene-expression and gene-set analyses revealed distinct biological signatures for each trait, highlighting different underlying biological pathways. Our results increase our understanding of diabetes pathophysiology by using trans-ancestry studies for improved power and resolution.



中文翻译:


血糖特征的跨祖先基因组结构



血糖特征用于诊断和监测 2 型糖尿病和心脏代谢健康。迄今为止,大多数血糖特征的遗传学研究都集中在欧洲血统的个体上。在这里,我们汇总了全基因组关联研究,包括多达 281,416 名无糖尿病个体(30% 非欧洲血统),这些个体的空腹血糖、口服葡萄糖激发后 2 小时血糖、糖化血红蛋白和空腹胰岛素数据均可用。跨祖先和单祖先荟萃分析确定了 242 个基因座(99 个新基因座; P < 5 × 10 -8 ),其中 80% 没有明显的祖先间异质性证据。仅限于具有同等样本量的欧洲血统个体的分析将导致新基因座减少 24 个。与单祖先分析相比,同等大小的跨祖先精细映射将 99% 可信集中的估计变异数量减少了中位数 37.5%。基因组特征、基因表达和基因集分析揭示了每个性状的独特生物学特征,突出了不同的潜在生物学途径。我们的结果通过使用跨祖先研究来提高功效和分辨率,增加了我们对糖尿病病理生理学的理解。

更新日期:2021-05-31
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