Abstract

The possibilities and advantages of a system-dynamic and agent-based approach to the modeling of processes in living systems are discussed. The basic principles and examples of kinetic and direct multiparticle computer modeling of photosynthetic electron transport and associated processes are demonstrated on the example of the modeling of processes in an energy-transforming photosynthetic membrane. The first part of the article considers detailed kinetic models that make it possible to study the dynamics of processes occurring in the photosynthetic membrane that are inaccessible to direct experimental measurement. Identification of the parameters of kinetic models according to experimental data makes it possible to estimate the rate constants of individual reactions and to track changes in the characteristics of photosynthesis in different autotrophic organisms during culture growth, under different lighting conditions, and under stress. This article is based on the results of studies performed at the Department of Biophysics, Faculty of Biology, Moscow State University.

中文翻译：

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生物学中的数学建模。第1部分。主要光合作用过程的动力学模型

摘要

讨论了在生活系统中对过程进行建模的基于系统动力学和基于代理的方法的可能性和优点。动力学和直接多粒子计算机模拟光合电子传输及相关过程的基本原理和示例在能量转换光合膜中的过程建模示例中得到了证明。本文的第一部分考虑了详细的动力学模型，这些模型使研究光合膜中发生的，无法直接进行实验测量的过程的动力学成为可能。根据实验数据确定动力学模型的参数，可以估算单个反应的速率常数，并跟踪培养过程中，不同光照条件下和胁迫下不同自养生物中光合作用特性的变化。本文基于莫斯科国立大学生物学系生物物理学系进行的研究结果。