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RepeatsPlus — program for finding motifs and repeats in data sequences
Journal of Bioinformatics and Computational Biology ( IF 0.9 ) Pub Date : 2021-04-24 , DOI: 10.1142/s0219720021500104
Ana Jelović 1
Affiliation  

Discovering motifs and repeats in data sequences is of great importance in biology and a large number of efficient tools for their finding have been developed. As the number of results found can be very large, our goal is to provide a tool that, on a mathematical basis, can precisely find all motifs and repeats, filter them according to input arguments and output the results in a convenient way. RepeatsPlus is a program that provides statistical filtering according to input sequence length and number of repeat occurrences, motif mask filtering and filtering related to ambiguous letters in input sequence and a large number of other options. RepeatPlus is implemented in Python and C++. It is freely available for public use. The user manual and examples of usage are also available.

中文翻译:

RepeatsPlus — 用于在数据序列中查找基序和重复的程序

发现数据序列中的基序和重复在生物学中非常重要,并且已经开发了许多用于发现它们的有效工具。由于找到的结果数量可能非常大,我们的目标是提供一种工具,该工具可以在数学基础上精确地找到所有主题和重复,根据输入参数过滤它们并以方便的方式输出结果。RepeatsPlus 是一个程序,它提供根据输入序列长度和重复出现次数的统计过滤、主题掩码过滤和与输入序列中的歧义字母相关的过滤以及大量其他选项。RepeatPlus 是用 Python 和 C 实现的++. 它可以免费供公众使用。还提供用户手册和使用示例。
更新日期:2021-04-24
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