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Gradient-based and wavelet-based compressed sensing approaches for highly undersampled tomographic datasets
Ultramicroscopy ( IF 2.2 ) Pub Date : 2021-04-15 , DOI: 10.1016/j.ultramic.2021.113289
Martin Jacob , Loubna El Gueddari , Gabriele Navarro , Audrey Jannaud , Guido Mula , Pascale Bayle-Guillemaud , Philippe Ciuciu , Zineb Saghi

Electron tomography is widely employed for the 3D morphological characterization at the nanoscale. In recent years, there has been a growing interest in analytical electron tomography (AET) as it is capable of providing 3D information about the elemental composition, chemical bonding and optical/electronic properties of nanomaterials. AET requires advanced reconstruction algorithms as the datasets often consist of a very limited number of projections. Total variation (TV)-based compressed sensing approaches were shown to provide high-quality reconstructions from undersampled datasets, but staircasing artefacts can appear when the assumption about piecewise constancy does not hold. In this paper, we compare higher-order TV and wavelet-based approaches for AET applications and provide an open-source Python toolbox, Pyetomo, containing 2D and 3D implementations of both methods. A highly sampled STEM-HAADF dataset of an Er-doped porous Si sample and a heavily undersampled STEM-EELS dataset of a Ge-rich GeSbTe (GST) thin film annealed at 450°C are used to evaluate the performance of the different approaches. We show that polynomial annihilation with order 3 (HOTV3) and the Bior4.4 wavelet outperform the classical TV minimization and the related Haar wavelet.



中文翻译:

针对高度欠采样的层析数据集的基于梯度和基于小波的压缩感知方法

电子断层扫描被广泛用于纳米尺度的3D形态表征。近年来,对分析电子断层扫描(AET)的兴趣日益浓厚,因为它能够提供有关纳米材料的元素组成,化学键合和光学/电子性质的3D信息。由于数据集通常由数量非常有限的投影组成,因此AET需要先进的重建算法。已显示基于总变异(TV)的压缩传感方法可从欠采样数据集中提供高质量的重建,但是当关于分段恒定性的假设不成立时,可能会出现楼梯伪影。在本文中,我们比较了针对AET应用程序的高阶电视和基于小波的方法,并提供了一个开源Python工具箱Pyetomo,其中包含这两种方法的2D和3D实现。掺Er多孔硅样品的高采样STEM-HAADF数据集和450°C退火的富含Ge的GeSbTe(GST)薄膜的STEM-EELS数据集严重欠采样,用于评估不同方法的性能。我们表明,多项式an灭与阶数3(HOTV 3)和Bior4.4小波的性能优于经典的电视最小化和相关的Haar小波。

更新日期:2021-04-26
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