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Correction of database SNP accession numbers misassigned to SNPs of the 8K IRSC apple SNP array
Tree Genetics & Genomes ( IF 1.9 ) Pub Date : 2021-02-27 , DOI: 10.1007/s11295-021-01500-3
Daniel A. Edge-Garza , Miguel Villamil-Castro , Dorrie Main , Craig Hardner

Accurate SNP locus identifiers are essential for the correct matching and aggregation of multiple historical datasets. The National Center for Biotechnology Information (NCBI) issued unique “submitted SNP identification” numbers (ssIDs) for every published SNP submitted to its database. Discrepant ssID information was discovered for 78 SNPs for the 8K IRSC apple SNP array while attempting to collate multiple historical datasets, and a review of the archived SNP database from the NCBI led to their correction and a collation of SNP markers with no duplicate ssIDs. As the incorrect ssIDs were subsequently republished and uploaded to the Genome Database for Rosaceae, the aim of this short communication is to report the correct NCBI ssIDs for these 78 SNPs to correctly aggregate historical SNP data, prevent perpetuation of the misassigned ssIDs in further publications, and provide a citation for correcting the misassigned ssIDs in the Genome Database for Rosaceae (because the NCBI no longer supports storage of non-human SNP data).



中文翻译:

更正错误分配给8K IRSC苹果SNP阵列的SNP的数据库SNP登录号

正确的SNP位点标识符对于正确匹配和聚合多个历史数据集至关重要。国家生物技术信息中心(NCBI)为提交到其数据库的每个已发布SNP发行了唯一的“提交的SNP标识”编号(ssID)。在尝试整理多个历史数据集时,发现了针对8K IRSC苹果SNP阵列的78个SNP的不正确ssID信息,并且通过NCBI对存档的SNP数据库的检查导致对它们进行了更正,并且对没有重复ssID的SNP标记进行了整理。由于不正确的ssID随后会重新发布并上传到酒渣鼻的基因组数据库中,因此,简短交流的目的是报告这78个SNP的正确NCBI ssID,以正确汇总历史SNP数据,

更新日期:2021-02-28
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