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Brain Modelling as a Service: The Virtual Brain on EBRAINS
arXiv - CS - Computational Engineering, Finance, and Science Pub Date : 2021-02-11 , DOI: arxiv-2102.05888 Michael Schirner, Lia Domide, Dionysios Perdikis, Paul Triebkorn, Leon Stefanovski, Roopa Pai, Paula Popa, Bogdan Valean, Jessica Palmer, Chloê Langford, André Blickensdörfer, Michiel van der Vlag, Sandra Diaz-Pier, Alexander Peyser, Wouter Klijn, Dirk Pleiter, Anne Nahm, Oliver Schmid, Marmaduke Woodman, Lyuba Zehl, Jan Fousek, Spase Petkoski, Lionel Kusch, Meysam Hashemi, Daniele Marinazzo, Jean-François Mangin, Agnes Flöel, Simisola Akintoye, Bernd Carsten Stahl, Michael Cepic, Emily Johnson, Anthony R. McIntosh, Claus C. Hilgetag, Marc Morgan, Bernd Schuller, Alex Upton, Colin McMurtrie, Timo Dickscheid, Jan G. Bjaalie, Katrin Amunts, Jochen Mersmann, Viktor Jirsa, Petra Ritter
arXiv - CS - Computational Engineering, Finance, and Science Pub Date : 2021-02-11 , DOI: arxiv-2102.05888 Michael Schirner, Lia Domide, Dionysios Perdikis, Paul Triebkorn, Leon Stefanovski, Roopa Pai, Paula Popa, Bogdan Valean, Jessica Palmer, Chloê Langford, André Blickensdörfer, Michiel van der Vlag, Sandra Diaz-Pier, Alexander Peyser, Wouter Klijn, Dirk Pleiter, Anne Nahm, Oliver Schmid, Marmaduke Woodman, Lyuba Zehl, Jan Fousek, Spase Petkoski, Lionel Kusch, Meysam Hashemi, Daniele Marinazzo, Jean-François Mangin, Agnes Flöel, Simisola Akintoye, Bernd Carsten Stahl, Michael Cepic, Emily Johnson, Anthony R. McIntosh, Claus C. Hilgetag, Marc Morgan, Bernd Schuller, Alex Upton, Colin McMurtrie, Timo Dickscheid, Jan G. Bjaalie, Katrin Amunts, Jochen Mersmann, Viktor Jirsa, Petra Ritter
The Virtual Brain (TVB) is now available as open-source cloud ecosystem on
EBRAINS, a shared digital research platform for brain science. It offers
services for constructing, simulating and analysing brain network models (BNMs)
including the TVB network simulator; magnetic resonance imaging (MRI)
processing pipelines to extract structural and functional connectomes;
multiscale co-simulation of spiking and large-scale networks; a domain specific
language for automatic high-performance code generation from user-specified
models; simulation-ready BNMs of patients and healthy volunteers; Bayesian
inference of epilepsy spread; data and code for mouse brain simulation; and
extensive educational material. TVB cloud services facilitate reproducible
online collaboration and discovery of data assets, models, and software
embedded in scalable and secure workflows, a precondition for research on large
cohort data sets, better generalizability and clinical translation.
中文翻译:
大脑建模即服务:EBRAINS上的虚拟大脑
虚拟大脑(TVB)现在可以在EBRAINS(大脑科学的共享数字研究平台)上作为开源云生态系统使用。它提供用于构建,模拟和分析脑网络模型(BNM)的服务,包括TVB网络模拟器;磁共振成像(MRI)处理管道,以提取结构和功能连接体;尖峰和大型网络的多尺度协同仿真;一种领域特定的语言,用于根据用户指定的模型自动生成高性能代码;患者和健康志愿者的模拟就绪BNM;贝叶斯推断癫痫扩散;用于鼠标大脑仿真的数据和代码;和广泛的教育材料。TVB云服务可促进可重现的在线协作以及数据资产,模型,
更新日期:2021-02-12
中文翻译:
大脑建模即服务:EBRAINS上的虚拟大脑
虚拟大脑(TVB)现在可以在EBRAINS(大脑科学的共享数字研究平台)上作为开源云生态系统使用。它提供用于构建,模拟和分析脑网络模型(BNM)的服务,包括TVB网络模拟器;磁共振成像(MRI)处理管道,以提取结构和功能连接体;尖峰和大型网络的多尺度协同仿真;一种领域特定的语言,用于根据用户指定的模型自动生成高性能代码;患者和健康志愿者的模拟就绪BNM;贝叶斯推断癫痫扩散;用于鼠标大脑仿真的数据和代码;和广泛的教育材料。TVB云服务可促进可重现的在线协作以及数据资产,模型,